EsuBft5126_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5126_2a-0001
Unique NameEsuBft5126_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:108686..108949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft5126_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length26
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5126_2aEsuBft5126_2aEctocarpus subulatus male Bft15bgeneScaffold_30 108686..108949 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5126_2a-0001-exonEsuBft5126_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 108686..108949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5126_2a-0001-cdsEsuBft5126_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 108686..108871 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5126_2a-0001-exonagat-three_prime_utr-17501Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 108872..108949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5126_2a-0001EsuBft5126_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 108686..108871 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5126_2a-0001 ID=EsuBft5126_2a-0001|Name=EsuBft5126_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=264bp|location=Sequence derived from alignment at Scaffold_30:108686..108949+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTACTCTCTGCTTCTGCTTGCCTCGCCCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCCGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACTACGCCTCCGGGTCCTTGGCGCCCTCTTTCCAT
TTACCCCCTTCCTTTTCGTCTCCCATGTTGAAGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNN
back to top

protein sequence of EsuBft5126_2a-0001

>EsuBft5126_2 ID=EsuBft5126_2|Name=EsuBft5126_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=62bp
MAVLSASACLARWRFADASASCPCHFLMNHAAPSSTLLYYASGSLAPSFH
LPPSFSSPMLKX
back to top

mRNA from alignment at Scaffold_30:108686..108949+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5126_2a-0001 ID=EsuBft5126_2a-0001|Name=EsuBft5126_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=264bp|location=Sequence derived from alignment at Scaffold_30:108686..108949+ (Ectocarpus subulatus male Bft15b)
ATGGCCGTACTCTCTGCTTCTGCTTGCCTCGCCCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCCGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACTACGCCTCCGGGTCCTTGGCGCCCTCTTTCCAT
TTACCCCCTTCCTTTTCGTCTCCCATGTTGAAGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNN
back to top

Coding sequence (CDS) from alignment at Scaffold_30:108686..108949+

>EsuBft5126_2a-0001 ID=EsuBft5126_2a-0001|Name=EsuBft5126_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_30:108686..108949+ (Ectocarpus subulatus male Bft15b)
ATGGCCGTACTCTCTGCTTCTGCTTGCCTCGCCCGCTGGCGCTTCGCGGA
CGCTTCCGCCTCCTGCCCGTGCCATTTCCTCATGAACCATGCCGCCCCGT
CCTCGACCTTGTTGTACTACGCCTCCGGGTCCTTGGCGCCCTCTTTCCAT
TTACCCCCTTCCTTTTCGTCTCCCATGTTGAAGNNN
back to top