EsuBft5106_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5106_3a-0001
Unique NameEsuBft5106_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:51..1689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FJG2
ProteomeIdEsuBft5106_3
Protein domainsCoil
Protein domainsG3DSA
Protein domainsIPR025995
Protein domainsIPR016197
Ownerapollo_admin@sb-roscoff.fr
Notemyst-like histone acetyltransferase 1 os:oryza sativa japonica gn:os07g0626600 pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length594
Hectar predicted targeting categoryother localisation
Evalue1.48e-75
EggNOG OGsCOG5027@1|root,KOG2747@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameKAT8
KEGG koko:K11308
GOsGO:0000075,GO:0000077,GO:0000123,GO:0000228,GO:0000775,GO:0000776,GO:0000803,GO:0000805,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0004402,GO:0004468,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005705,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007549,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0009047,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010212,GO:0010468,GO:0010485,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0016043,GO:0016407,GO:0016410,GO:0016456,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030097,GO:0030099,GO:0030154,GO:0030330,GO:0031056,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031399,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034212,GO:0034641,GO:0034708,GO:0035064,GO:0035065,GO:0035097,GO:0035556,GO:0036211,GO:0040029,GO:0042393,GO:0042770,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044545,GO:0044665,GO:0045786,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046536,GO:0046972,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0060548,GO:0061733,GO:0065007,GO:0065009,GO:0070013,GO:0071214,GO:0071339,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0072331,GO:0072487,GO:0080090,GO:0080134,GO:0080135,GO:0090239,GO:0090304,GO:0097159,GO:0098687,GO:0104004,GO:0140030,GO:0140034,GO:1901360,GO:1901363,GO:1901564,GO:1901983,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2000756,GO:2000873,GO:2001020,GO:2001141
EC2.3.1.48
Descriptionhistone acetyltransferase activity
COG categoryB
BRITEko00000,ko01000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0043967
GO0000123
GO0010485
GO0003824
GO0048523
GO0048513
GO0048522
GO0030154
GO0005694
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5106_3aEsuBft5106_3aEctocarpus subulatus male Bft15bgeneScaffold_385 51..1689 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5106_3a-0001-exonEsuBft5106_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 51..259 -
EsuBft5106_3a-0001-exonagat-exon-85843Ectocarpus subulatus male Bft15bexonScaffold_385 1305..1689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5106_3a-0001-cdsEsuBft5106_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 51..259 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5106_3a-0001-exonagat-five_prime_utr-11091Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_385 1666..1689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5106_3a-0001EsuBft5106_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 51..1665 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5106_3a-0001 ID=EsuBft5106_3a-0001|Name=EsuBft5106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=594bp|location=Sequence derived from alignment at Scaffold_385:51..1689- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAACAAAGATACTAACGTTGAACATGAAAATTCAGGTAGGGCAAAGGTG
GAAGGTAGCGTGGCGCGACGGTACGGTGCACCTCGCCGAGATCGTCGAGA
TCAGGAAGGCGGAGGGAAGCTCGGACGCCGCCACGGCCTCCGCCGCTGCC
AAGGCTGGATCTACGGATAAAGATAAGGCAGCTCCAAAGGCCGCGGCGGC
TGGAGGTGAGCCCAGCGGGTCTAGCAGTGCAGGAGGTGGAGGGGCTGTTT
ACGTGCACTATGTGGACTTCGACCGGAGATTGGACGAGTGGGTCGGGATG
GAGCGCGTCGACCTGGCGGCGGGGCAGCAGAGAGCGGTGGCGCACCATAA
CGGGGACAAGCGACGGGTGACGACAAGGATGAAACGAAAGTACGATGAAA
TGGGCTCAAAAAGCGGGCACGGGGGGGGCGGCGACAGAGAGGGGTTGGAC
GCCAACATCGCCATGTTGGAGAAGGAGCACGAAGAGATTACCAAGGTGGG
CAAGTCACAATGTACGGCGCAAGAAAAGTATGTGGCGTGTCGCACCCCCA
CCTGGCAGATACCGTATATGACACAAGATAACACACCACCTTGA
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protein sequence of EsuBft5106_3a-0001

>EsuBft5106_3 ID=EsuBft5106_3|Name=EsuBft5106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MKIQVGQRWKVAWRDGTVHLAEIVEIRKAEGSSDAATASAAAKAGSTDKD
KAAPKAAAAGGEPSGSSSAGGGGAVYVHYVDFDRRLDEWVGMERVDLAAG
QQRAVAHHNGDKRRVTTRMKRKYDEMGSKSGHGGGGDREGLDANIAMLEK
EHEEITKVGKSQCTAQEKYVACRTPTWQIPYMTQDNTPP
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mRNA from alignment at Scaffold_385:51..1689-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5106_3a-0001 ID=EsuBft5106_3a-0001|Name=EsuBft5106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1639bp|location=Sequence derived from alignment at Scaffold_385:51..1689- (Ectocarpus subulatus male Bft15b)
GCAACAAAGATACTAACGTTGAACATGAAAATTCAGGTAGGGCAAAGGTG
GAAGGTAGCGTGGCGCGACGGTACGGTGCACCTCGCCGAGATCGTCGAGA
TCAGGAAGGCGGAGGGAAGCTCGGACGCCGCCACGGCCTCCGCCGCTGCC
AAGGCTGGATCTACGGATAAAGATAAGGCAGCTCCAAAGGCCGCGGCGGC
TGGAGGTGAGCCCAGCGGGTCTAGCAGTGCAGGAGGTGGAGGGGCTGTTT
ACGTGCACTATGTGGACTTCGACCGGAGATTGGACGAGTGGGTCGGGATG
GAGCGCGTCGACCTGGCGGCGGGGCAGCAGAGAGCGGTGGCGCACCATAA
CGGGGACAAGCGACGGGTGACGACAAGGATGAAACGTGAGCAAGCTTTGC
TTGTCTTGTCAGAACCCAGGACGGTGATGTGCTGTCGATTGCAGTATGAC
GGATGGGCAAGGCCCGGAAGGCGAGGGGAAGGGGTCTTTGTCGGGGGCGT
GTTCTCTTCCACTGCTGGTTTTATCTCGCCAAGAACATCAAACATAAAAT
CATCGAGTGCGGTAGGTTCGTTTTTTGCGCCTTGGGCTATCAGGTTTGAA
GCGAAGGGTCCGTTTGTTTTCCGGTGTTCACGCCAGCGGATTTTGCTTTC
AGACCTATTAGCTCACTAAGATTGTTGTGCACGGGGTGCCTCAGTTGATC
GATTGACCCGCCGTCCTCGCATGATGCGACAACGTGACGTCGTTTCCTTT
GCATTGCCAAGAGCCGTACGCGTAGTTTACAGCCTGCAACTTAATCCTAC
TTGGTCTGATGCAGTTGATCACGATGAGCTGCATGTAGACTTCACGGCCA
GTTGTCATCTCCAATCTATTGTTTTCGTTGTACTTGTTTTACCGATGCCC
GGTTTTCGGCACCTCTTGCGTGTAGGAACTGGTGTTTTTGTGCCATACTG
TACACTTGATGGGTTCATTGATGGTCAAGGCGTGGACGTTACCTCTCAGT
TGGCATGGAGCGTGTGCGTAGGCTATCTTTTAGCGGGCAAAGTCCTCCTT
CCTTTGTGCCTCGTCTTACGGTCGAAGCTAGGCCTGCATTCGAGCGTCAC
GTAGAGTTAATGCGTGGATGGATCGAAAAGCAAATGGGTGGTGCTTCCGC
GGGAATGAGCTTGTTCCACGCCCTATTTCTTGTTCTTCGCCCGCTCAGGG
GAGCGACTCTTTTTCTGCCCGCGTTTGCATTCCCGCTATTAAGATGTTGC
TTGCCGCTCTAATAGTATCGCGAATAGATTGTTCTTACCTGGAACAATCA
GCGAATCAGCGGGCAACGTCGTCAGGAATGTTGTTGTTGAATCATCGCAA
CGCTTCGATGTTGTTGCTTGACGTGAAATTACAAATCACGCCGCGCTCTT
TTGCTACCGTCGTTTTTTTTTTTTTTGCAGGAAAGTACGATGAAATGGGC
TCAAAAAGCGGGCACGGGGGGGGCGGCGACAGAGAGGGGTTGGACGCCAA
CATCGCCATGTTGGAGAAGGAGCACGAAGAGATTACCAAGGTGGGCAAGT
CACAATGTACGGCGCAAGAAAAGTATGTGGCGTGTCGCACCCCCACCTGG
CAGATACCGTATATGACACAAGATAACACACCACCTTGA
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Coding sequence (CDS) from alignment at Scaffold_385:51..1689-

>EsuBft5106_3a-0001 ID=EsuBft5106_3a-0001|Name=EsuBft5106_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_385:51..1689- (Ectocarpus subulatus male Bft15b)
ATGAAAATTCAGGTAGGGCAAAGGTGGAAGGTAGCGTGGCGCGACGGTAC
GGTGCACCTCGCCGAGATCGTCGAGATCAGGAAGGCGGAGGGAAGCTCGG
ACGCCGCCACGGCCTCCGCCGCTGCCAAGGCTGGATCTACGGATAAAGAT
AAGGCAGCTCCAAAGGCCGCGGCGGCTGGAGGTGAGCCCAGCGGGTCTAG
CAGTGCAGGAGGTGGAGGGGCTGTTTACGTGCACTATGTGGACTTCGACC
GGAGATTGGACGAGTGGGTCGGGATGGAGCGCGTCGACCTGGCGGCGGGG
CAGCAGAGAGCGGTGGCGCACCATAACGGGGACAAGCGACGGGTGACGAC
AAGGATGAAACGAAAGTACGATGAAATGGGCTCAAAAAGCGGGCACGGGG
GGGGCGGCGACAGAGAGGGGTTGGACGCCAACATCGCCATGTTGGAGAAG
GAGCACGAAGAGATTACCAAGGTGGGCAAGTCACAATGTACGGCGCAAGA
AAAGTATGTGGCGTGTCGCACCCCCACCTGGCAGATACCGTATATGACAC
AAGATAACACACCACCTTGA
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