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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FNF7 |
| ProteomeId | EsuBft509_8 |
| Protein domains | IPR011333 |
| Protein domains | IPR013069 |
| Protein domains | PTHR24412 |
| Protein domains | G3DSA |
| Protein domains | IPR011705 |
| Protein domains | IPR000210 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | kelch-like protein 3 os:mus musculus gn:klhl3 pe:1 sv:2 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2192 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.69e-314 |
| EggNOG OGs | KOG4441@1|root,KOG4441@2759|Eukaryota |
| Ec32 ortholog description | BTB/Kelch-associated |
| Ec32 ortholog | Ec-01_005610.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC00010,RC02798 |
| KEGG ko | ko:K01915,ko:K10443,ko:K13956 |
| KEGG Reaction | R00253 |
| KEGG Pathway | ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 |
| EC | 6.3.1.2 |
| Description | protein ubiquitination |
| COG category | KLT |
| BRITE | ko00000,ko00001,ko01000,ko04121,ko04147 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006810 |
| GO | 0031227 |
| GO | 0016020 |
| GO | 0043231 |
| GO | 0044699 |
| GO | 0016567 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft509_8a-0001 ID=EsuBft509_8a-0001|Name=EsuBft509_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2192bp|location=Sequence derived from alignment at Scaffold_235:318570..322854- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTTCTGCCGGCGCCAGCAGCGGATGTTGTTCGTCTAGCCCTTCAGAG
GAGGAACGGCAGTGATTGCCTCCGCATCCTCGTCATGCTAGCTTGCTTGG
CTTGCTGCCGGCGAGGGAGAGCGGCTCTAAGCCTCACCGTCTGCAAGGTC
ACGAGCCCTGTCTCCTTTCTGCTCTGCTGCATCGGCCTGAGTCGAAGGAG
AGATCGCAACAACGGAACCCTGCTGTGCGGGAATGGCAACGGCGACACCA
ACGCGGGGCAACGTCCGAGAGGACGAATAGGGGGGTGGACTAGCGCGTTC
AGGAGGGGCATCCCCAGCTGCGAATCCGGGGAAGGGGGGGATCTGTTCGA
CCAGCAGGGCGGTGGAGCGCTTGCGTCGAGATCGGCACTGAGCGAGGCGA
CGCTGGGGGCGCGCGGTAGGCGGACGGCCTTCGAGAGGTTCGGGGAGCTG
CGACGGGTCGGCGCGTGCTGCGACGTGACCCTGGCCGTGGGCAGTAAACA
CTTCAAGGCGCACAAGTGTGTCTTGGCAGCCCAGAGCTCGCCGCTGCGCG
CCATGTTCGAGGGCTCGTTCAAGGAAGGCAGCGAGGACGTGATCTCGCTC
CTGGACGTGGAGCCCCACAGCTTCTCGCTCCTGCTGGACTTCTTCTATGA
TCGCGGGGTCGAGGTCACTGACGAGAACGTGGAGGCGCTGCTGGACCTCA
GCGCGAGGTATGGCGTGTCGCTGCTGCGGCGGCACTGCTGCGCCTTCCTG
GCGGGCTCCGCTAGCCCTGCTACGGCCTGCTCCCTGCTCTCGGTGGCCGA
CCGCTACGACTGCCACAGACTGCGGAGAGTTATGCTCGCGTACACGCTAG
AGCGATTCCCGACAATTTGCCGCGACAGCTCTTCGGACGGGTTTCGCCAT
CTCTCCGCTGCTCTAGTTGTCGAGGTGCTCAAGGACGACCGGTTGGCTGC
GGGGCAGGAGGGCGAGCTGGCTGTCTTCTGGGCGGCGATATCCTGGCTGG
AAGCAGAGCATTCCCGTCGAAGGAATGCGGATGAGGCGAACATCGTGCTC
TCACACGTGCGGTTTGGCCTCGTCTCGGCCAAAGCCATCGCCGACGCCGT
GGAAGCCCACCCCTTGATGCAGTCGGCGGCCGGCAAGGCCTTTGTGCACG
AGGCCTACCGTTACCAAGCGCTGCCGCCGGAAAGCCGGGACAACTTCGCC
TCGTCGATGGCGGCGCGCGCCCGCCGGCGAACAGCGGCCGGCGGTGACGG
TGGCCGCGGCTACCGTACGGGCCAGTCACCCTCCGCTGCTCTGAAACCGG
ACCATGGTGATGGTGTAGGTGATTTTTCTGGATGGCTGAGGGTTGATGGT
TTTGGTGATGACCAAGGGGACAGCAGTAGTGATTCTTCGAGTTGCGAGGT
TCGGGGTAGTGGCGCCGGGGACAGCGAATCTGAGGGAGGAGAGGACCCTC
CGGTGGCGGGGGGCGAAAGTAGCCGGCACGGTGGTAGCAACGGCGGCGCC
GCCGCCGACGGTGGCATCGGTGACGGCATGCGCTCGGCGCCTGTGTCTGG
TAGTGCGGAAGAGATGAGCGCAGGGAGGGAAGAATCGGCGAGGGGGGAGA
GCAGAGTGGGGAACGAATCCCGTCCGAGGAAGTTGCACATGACCGACGGC
AACCCCAAAAGAAGGTTGTGGGGGGCGGGGACTCGGATGTACGTTTGATC
CGCTGGCGATCTGGGCCGCCGGCGTCGCCAGGTTCTATCACTGGAGGGTC
GCCTTGAAAAGCTGCGTATGTAGACACCCGCAACCAGTTTCGGTGTAAAT
ACTTTTACGCAGGGTATCCCTGGTGTTTGTTTTGAGTAGCTCGTGATATA
ATATGCTGTTATGAGACGATGGATGCGCCCTGTGCGTGCCTACACTTTGG
CATGATCTGTTTGATGCGTGGACGAGGAGGGGGTACCGCTGGCATGCCTA
GACTATAGTCTTCAGACGTTGTGCAATAACCTTCTGTTTTCCTGTCCTTT
GAATAATGGTTTGGGTGTTTATAGATTCAGGTGGAATTTTTTTTACTTCT
CGGTTTTGTTGGGGGCGCAACGTCTGTGTACCTTTGGCGAGATCTTTCAG
GTGAAAGTCGGTTAAGGAGCGTTCTATGTCCGTTTCGCTTGTTTGTGGAA
ACTAAAAGAAGTAGCTTGTTTGCAATCCACGGTGTGCTTTCC back to topprotein sequence of EsuBft509_8a-0001 >EsuBft509_8 ID=EsuBft509_8|Name=EsuBft509_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=565bp
MLLPAPAADVVRLALQRRNGSDCLRILVMLACLACCRRGRAALSLTVCKV
TSPVSFLLCCIGLSRRRDRNNGTLLCGNGNGDTNAGQRPRGRIGGWTSAF
RRGIPSCESGEGGDLFDQQGGGALASRSALSEATLGARGRRTAFERFGEL
RRVGACCDVTLAVGSKHFKAHKCVLAAQSSPLRAMFEGSFKEGSEDVISL
LDVEPHSFSLLLDFFYDRGVEVTDENVEALLDLSARYGVSLLRRHCCAFL
AGSASPATACSLLSVADRYDCHRLRRVMLAYTLERFPTICRDSSSDGFRH
LSAALVVEVLKDDRLAAGQEGELAVFWAAISWLEAEHSRRRNADEANIVL
SHVRFGLVSAKAIADAVEAHPLMQSAAGKAFVHEAYRYQALPPESRDNFA
SSMAARARRRTAAGGDGGRGYRTGQSPSAALKPDHGDGVGDFSGWLRVDG
FGDDQGDSSSDSSSCEVRGSGAGDSESEGGEDPPVAGGESSRHGGSNGGA
AADGGIGDGMRSAPVSGSAEEMSAGREESARGESRVGNESRPRKLHMTDG
NPKRRLWGAGTRMYV back to topmRNA from alignment at Scaffold_235:318570..322854- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft509_8a-0001 ID=EsuBft509_8a-0001|Name=EsuBft509_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4285bp|location=Sequence derived from alignment at Scaffold_235:318570..322854- (Ectocarpus subulatus male Bft15b)
ATGCTTCTGCCGGCGCCAGCAGCGGATGTTGTTCGTCTAGCCCTTCAGAG
GAGGAACGGCAGTGATTGCCTCCGCATCCTCGTCATGCTAGCTTGCTTGG
CTTGCTGCCGGCGAGGGAGAGCGGCTCTAAGCCTCACCGTCTGCAAGGTT
TGTATGTGTTTGTGTGCTGGAAAGGAGCTCTGAGAAACATGTATGTCAAC
TCTGTTCTCCTAGCAGTCTATGCATCGGGCTCAGTTTTTGAATTCGCGGT
GCCGTTGCAAGTTTGAAGTTCTTGAGGGTCTTCCATCCTCCCCTATTGAG
AGTTGGCTTGGTTTACCGCCAACGATTTCCGACAAGGTGGCGCAAGCCTT
TCAGTGGCGCCTGCTGGATATACCAATGGCCGGTGTCTTGCCAATGCAAT
GCCTGGTAGTAAATGAATCTAGGTTTGTGAGCCTGAAATAACTCCGTTCA
TGGCCGGCACACATGGCCGGCCGTAGTTTGTTGGTGGAACACGCCGGCAT
GGCGTACACAAAGGGATGCCCCCTGCGATGTAATCCGCGTGGGAGAGACT
GCGTGACGAGGACCTCACCAGGATGTTGCGACGATAACGGCACCACAATA
TCCACCCTATTCTCCTGAGCGAAGCGTCGTCCCGGAACTTGTTGTTAACT
ACCGCTCCTGGACACAGCAGTTAGACCTGCCAACCGTGACTGCTGGAACC
TGCGCCGCATCCCAATCCGACACGCTGCCGCCTCCCGCTTCCGACGAGCC
ACAGCAAGAGAGGATTCCGCTGCAAACACACATCAACCGCGTGAAAACAA
AGGCGTTTAGACATAGATTGCCAATCTGTCGGTGGCCCAGCTCACACGAT
GCTCAATGAACGCATGCGGAGCCCCCATGCCCCCGCCGGGTGTCTTATCT
CTTGGGGCTCACTTCTGTCGATTACTTCCGTTCAACCCTCTTGTCAACAC
CAAACGATCACAGGTCACGAGCCCTGTCTCCTTTCTGCTCTGCTGCATCG
GCCTGAGTCGAAGGAGAGATCGCAACAACGGAACCCTGCTGTGCGGGAAT
GGCAACGGCGACACCAACGCGGGGCAACGTCCGAGAGGACGAATAGGGGG
GTGGACTAGCGCGTTCAGGAGGGGCATCCCCAGCTGCGAATCCGGGGAAG
GGGGGGATCTGTTCGACCAGCAGGGCGGTGGAGCGCTTGCGTCGAGATCG
GCACTGAGCGAGGCGACGCTGGGGGCGCGCGGTAGGCGGACGGCCTTCGA
GAGGTTCGGGGAGCTGCGACGGGTCGGCGCGTGCTGCGACGTGACCCTGG
CCGTGGGCAGTAAACACTTCAAGGCGCACAAGTGAGGGGGCGCGCGTTTG
GGGAGGCTTGCGCGTGTGTGGTGGGGGGAGGGGAAAGCACGCAGGGCTTG
AGGACCAGAGTGTACCAGCCATGACGGTGGTCGTGGAACGGAAAAGATTT
GCTGTGATCAGCCCTCACACATGAATACTCCCACCGTGCTCATTCGGTGC
GGTCGCGGTCTTTCCCTAACCCGGGAATTTTGGTTGATAGATTGCGACGT
GCTCTAACCGATGGTAAAGTGGGGTGTGTAACTAATCACATTCAATACCC
TTCAAAGTCCTGCACCCCGAACAACCGGAACCGACAAAAAGGTGTGTCTT
GGCAGCCCAGAGCTCGCCGCTGCGCGCCATGTTCGAGGGCTCGTTCAAGG
AAGGCAGCGAGGACGTGATCTCGCTCCTGGACGTGGAGCCCCACAGCTTC
TCGCTCCTGCTGGACTTCTTCTATGATCGCGGGGTCGAGGTCACTGACGA
GAACGTGGAGGCGCTGCTGGACCTCAGCGCGAGGTATGGCGTGTCGCTGC
TGCGGCGGCACTGCTGCGCCTTCCTGGCGGGCTCCGCTAGCCCTGCTACG
GCCTGCTCCCTGCTCTCGGTGGCCGACCGCTACGACTGCCACAGACTGCG
GAGAGTTATGCTCGCGTACACGCTAGAGGTAAGTTTTTTTTTCTCGCTCT
CGTGTGCGTATGGGCCGTTTTGTGCTCCAGTCGGAAATCGATCCTGTCGA
ACAGGCGGGGGGGGGCGTACTTCTTCGTCGCTTGTTGCCTTTTTCTAGAA
TCGTTACCTTTGACCATGCAATGAGAACCGCCGTTCCTTCTCCTAGGAGA
ACTTGCCAGCACTCGGGCGCTTTTGCAGGGTCCGCGGCGTTTGTTCAAAG
TAGATTCTTGCTTGTTCCTTGTAGCCTCTCCCTTTGTAGCGCCGTCAGGC
CACCGTTGACTTCCCAGCACGGTCATGACTTGGGACGGGGGGGGGTTGAA
AGTTTGCTGCTTGTTGAAAGTTTGCTCATGAAGAAGAGGTGTTCACGCGT
TTTTCGAGTAGAAACCGCTCGTTAACCGAAACGTGAGCTCATCAAACGGC
GCTCTGCACGTAGCGTTGTGAACGAGCATTTCTTGTCCACCGCAAGGGTT
GTGGAAGCAAGCTCAATTCAATGTCCTAAGCGTCTTTCTGAGGCATTGTA
TCGCACGTGCAGCACACCCTCCCGAGTGTCCTTGGTCACCACCCGCCCCC
CTCCCCGCTTCTCCACACGCCTTGTTTTTTCCACCACGCAGCGATTCCCG
ACAATTTGCCGCGACAGCTCTTCGGACGGGTTTCGCCATCTCTCCGCTGC
TCTAGTTGTCGAGGTGCTCAAGGACGACCGGTTGGCTGCGGGGCAGGAGG
GCGAGCTGGCTGTCTTCTGGGCGGCGATATCCTGGCTGGAAGCAGAGCAT
TCCCGTCGAAGGAATGCGGATGAGGCGAGTTTTCTCCCACTCGGGAGGCC
GTCGTTGGTTGGGTTTACCGATGGGCTCGCGGCGTTCATGTTGGCGTGAC
ATTGGACGGGATGGTAGCGTTAGGCTTGTCAACCAGTGGTGTTATTGGCA
TTTGTGCTTGGAGCACTGTGTGATCATCGTCATACCATTATGCACGTGCG
GCGACGAAGACATCGTCGAGAGGTATGGATTGCATTGGGGGGGCGCAAGG
TTGGGCGCACCAGTTTTGGAACCCGAACCCGTACGAGATGCCTCACTTCC
ATTGTGTCCTGTTCCTGACGCCCCCCCCCGCGACGCGGCGCTCTGTCCGG
CTCGTTACCCTCCTCGGCTTCAAACCCGCCGCCGCAGGTGCTCTCACACG
TGCGGTTTGGCCTCGTCTCGGCCAAAGCCATCGCCGACGCCGTGGAAGCC
CACCCCTTGATGCAGTCGGCGGCCGGCAAGGCCTTTGTGCACGAGGCCTA
CCGTTACCAAGCGCTGCCGCCGGAAAGCCGGGACAACTTCGCCTCGTCGA
TGGCGGCGCGCGCCCGCCGGCGAACAGCGGCCGGCGGTGACGGTGGCCGC
GGCTACCGTACGGGCCAGTCACCCTCCGCTGCTCTGAAACCGGACCATGG
TGATGGTGTAGGTGATTTTTCTGGATGGCTGAGGGTTGATGGTTTTGGTG
ATGACCAAGGGGACAGCAGTAGTGATTCTTCGAGTTGCGAGGTTCGGGGT
AGTGGCGCCGGGGACAGCGAATCTGAGGGAGGAGAGGACCCTCCGGTGGC
GGGGGGCGAAAGTAGCCGGCACGGTGGTAGCAACGGCGGCGCCGCCGCCG
ACGGTGGCATCGGTGACGGCATGCGCTCGGCGCCTGTGTCTGGTAGTGCG
GAAGAGATGAGCGCAGGGAGGGAAGAATCGGCGAGGGGGGAGAGCAGAGT
GGGGAACGAATCCCGTCCGAGGAAGTTGCACATGACCGACGGCAACCCCA
AAAGAAGGTTGTGGGGGGCGGGGACTCGGATGTACGTTTGATCCGCTGGC
GATCTGGGCCGCCGGCGTCGCCAGGTTCTATCACTGGAGGGTCGCCTTGA
AAAGCTGCGTATGTAGACACCCGCAACCAGTTTCGGTGTAAATACTTTTA
CGCAGGGTATCCCTGGTGTTTGTTTTGAGTAGCTCGTGATATAATATGCT
GTTATGAGACGATGGATGCGCCCTGTGCGTGCCTACACTTTGGCATGATC
TGTTTGATGCGTGGACGAGGAGGGGGTACCGCTGGCATGCCTAGACTATA
GTCTTCAGACGTTGTGCAATAACCTTCTGTTTTCCTGTCCTTTGAATAAT
GGTTTGGGTGTTTATAGATTCAGGTGGAATTTTTTTTACTTCTCGGTTTT
GTTGGGGGCGCAACGTCTGTGTACCTTTGGCGAGATCTTTCAGGTGAAAG
TCGGTTAAGGAGCGTTCTATGTCCGTTTCGCTTGTTTGTGGAAACTAAAA
GAAGTAGCTTGTTTGCAATCCACGGTGTGCTTTCC back to topCoding sequence (CDS) from alignment at Scaffold_235:318570..322854- >EsuBft509_8a-0001 ID=EsuBft509_8a-0001|Name=EsuBft509_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1698bp|location=Sequence derived from alignment at Scaffold_235:318570..322854- (Ectocarpus subulatus male Bft15b)
ATGCTTCTGCCGGCGCCAGCAGCGGATGTTGTTCGTCTAGCCCTTCAGAG
GAGGAACGGCAGTGATTGCCTCCGCATCCTCGTCATGCTAGCTTGCTTGG
CTTGCTGCCGGCGAGGGAGAGCGGCTCTAAGCCTCACCGTCTGCAAGGTC
ACGAGCCCTGTCTCCTTTCTGCTCTGCTGCATCGGCCTGAGTCGAAGGAG
AGATCGCAACAACGGAACCCTGCTGTGCGGGAATGGCAACGGCGACACCA
ACGCGGGGCAACGTCCGAGAGGACGAATAGGGGGGTGGACTAGCGCGTTC
AGGAGGGGCATCCCCAGCTGCGAATCCGGGGAAGGGGGGGATCTGTTCGA
CCAGCAGGGCGGTGGAGCGCTTGCGTCGAGATCGGCACTGAGCGAGGCGA
CGCTGGGGGCGCGCGGTAGGCGGACGGCCTTCGAGAGGTTCGGGGAGCTG
CGACGGGTCGGCGCGTGCTGCGACGTGACCCTGGCCGTGGGCAGTAAACA
CTTCAAGGCGCACAAGTGTGTCTTGGCAGCCCAGAGCTCGCCGCTGCGCG
CCATGTTCGAGGGCTCGTTCAAGGAAGGCAGCGAGGACGTGATCTCGCTC
CTGGACGTGGAGCCCCACAGCTTCTCGCTCCTGCTGGACTTCTTCTATGA
TCGCGGGGTCGAGGTCACTGACGAGAACGTGGAGGCGCTGCTGGACCTCA
GCGCGAGGTATGGCGTGTCGCTGCTGCGGCGGCACTGCTGCGCCTTCCTG
GCGGGCTCCGCTAGCCCTGCTACGGCCTGCTCCCTGCTCTCGGTGGCCGA
CCGCTACGACTGCCACAGACTGCGGAGAGTTATGCTCGCGTACACGCTAG
AGCGATTCCCGACAATTTGCCGCGACAGCTCTTCGGACGGGTTTCGCCAT
CTCTCCGCTGCTCTAGTTGTCGAGGTGCTCAAGGACGACCGGTTGGCTGC
GGGGCAGGAGGGCGAGCTGGCTGTCTTCTGGGCGGCGATATCCTGGCTGG
AAGCAGAGCATTCCCGTCGAAGGAATGCGGATGAGGCGAACATCGTGCTC
TCACACGTGCGGTTTGGCCTCGTCTCGGCCAAAGCCATCGCCGACGCCGT
GGAAGCCCACCCCTTGATGCAGTCGGCGGCCGGCAAGGCCTTTGTGCACG
AGGCCTACCGTTACCAAGCGCTGCCGCCGGAAAGCCGGGACAACTTCGCC
TCGTCGATGGCGGCGCGCGCCCGCCGGCGAACAGCGGCCGGCGGTGACGG
TGGCCGCGGCTACCGTACGGGCCAGTCACCCTCCGCTGCTCTGAAACCGG
ACCATGGTGATGGTGTAGGTGATTTTTCTGGATGGCTGAGGGTTGATGGT
TTTGGTGATGACCAAGGGGACAGCAGTAGTGATTCTTCGAGTTGCGAGGT
TCGGGGTAGTGGCGCCGGGGACAGCGAATCTGAGGGAGGAGAGGACCCTC
CGGTGGCGGGGGGCGAAAGTAGCCGGCACGGTGGTAGCAACGGCGGCGCC
GCCGCCGACGGTGGCATCGGTGACGGCATGCGCTCGGCGCCTGTGTCTGG
TAGTGCGGAAGAGATGAGCGCAGGGAGGGAAGAATCGGCGAGGGGGGAGA
GCAGAGTGGGGAACGAATCCCGTCCGAGGAAGTTGCACATGACCGACGGC
AACCCCAAAAGAAGGTTGTGGGGGGCGGGGACTCGGATGTACGTTTGA back to top
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