Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FNF5 |
| ProteomeId | EsuBft509_6 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SignalP-TM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR23426 |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | IPR001041 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SignalP-noTM |
| Protein domains | IPR001478 |
| Protein domains | IPR012675 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 262 |
| Hectar predicted targeting category | chloroplast |
| Evalue | 1.79e-196 |
| EggNOG OGs | COG0633@1|root,2S5MT@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | 2Fe-2S iron-sulfur cluster binding domain |
| COG category | C |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0051536 |
| GO | 0009055 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft509_6a-0001 ID=EsuBft509_6a-0001|Name=EsuBft509_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2621bp|location=Sequence derived from alignment at Scaffold_235:332799..338248- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTAGGGTCCTGCTGCCGTGCTGTACGCTGTGTTTGGCTGGCGTTTCGCTA
TCACATCAACCATGAAGGCACCAGTTTGCGTTGTTCTCCTCTCCCATTGC
TGCGCCGCGTTCACGCTCTCGCCAGCGACATTGTTGTCCTTGCAAAGATC
ATGTGCCTTCTCCGCAGCAGAGCATGTGAGCTCTCCCCAGCGGAGCTGCA
GCAGCAGCAGCAGCAGAAGCAACAGGTGCCAACCTGATCGACGAAGGCAG
CGACCGCCTGGTGGTTCTCGCGTTCCTAGTTTCGCCCTGGGTGCAGCTAA
GGACTGGCTCAAAGGAGGCTCTCAAGGGAAGAGCGGACCGGAGGGACCCA
AGACCGGATCTGTTGCAGCAGGGACATCGGGCAAGAGCGGAGAGGTCAAG
AAGGGTCCCGACGGAGAAGACCTGGACCCCCGTCTCTACTCAGTCAGGAT
CGCACGCGCCACCGGGATCGAATGGGGCACGGACATCAGCTTCTCGTGGG
TGTACATCCGGGCCCTGCAGCCGGACGGCGCGGCGGCGAACTGCGGGGAA
ATCTCCGTCGGAGATCAGCTAATTGCAATAAACGACCAGACGTTGACCGG
GGCACCTTTCGACGTGGCGATGGACGCCATGATTGCTCTAGAGGGCCCCG
ACGTCGAGTTCACCTTCTTCAGGGGCTCGACGGAGGAGCTCAAGGAGGTG
GTTGGTGCGGAAGCCCCCCGGGCAGAGATCACGGTTACCGTCAAGCAGGA
AGGGAAGCCGGAGTTGGTCCTCACGGCGCCCTCGGGGGCCAACCTCCGCG
ACTTTCTCACCGAGAACGGCATCAACGTCTACCAGTCCGTCACGCGCTGG
ACCAACTGCAAGGGGAAGCAGCTGTGCGGCACGTGCATCGTGGCGATCGA
CGAGGGTTTGGAGGGCACGACAATCCGCTCGGTCGACGAGAGCTCCACGC
TCAGAGACAACCCGCCCAACTACCGCCTATCGTGCGTCACCAACATGTAC
GACGACGTGACGGTCACGGTTTTCCCGCCAGTTGGGGCCGCTCAATGGAC
AAGATGAAAACAAAACAAGCATTTCGGCGACCCTCGGGTCGTTTGTCGGC
GTGGTTGCGTTTCGCCTGCAGAAAGCGACGCGCCGGGGGACAGGGGGGGC
AGATCGTGGACGTAGCAGCAGCACTGCAATGAGAGGGTGGGACACCTACA
CAAGCCTGCCAGATTGTTTGCTTTGTGTTTTTGTGGTGCATGTCCCGGGT
GTTGGCAAGCGCAGTTGTGACGATGTGTATCGCCTTTCGGTGGGGGACGT
TTTGCGCACCTCTTTCGCTTCTCTCTGTTGTTGCAAAAAGTCGCTGGTCA
CTTCACCCGGCTCTTGTAGGATGTACGGTTACCAAAGTTATGGGAACCAT
AGCTCGCTGCTGCAGCAAGAGAAGTGGCGCTGCTGCTGTTGTTGTATTTA
CACTCTACCCGTATCACGTATGCATAAGCTCAAAATTGAGTCTTGTGTTC
GCTGTCGAGGAGCTTCGAACCGAGGTTAGGTGAACTATTCACTCCAACAA
CGATTTTAGTTTTTTGCGAGCAGACACCATTTCGTAGCAGGATTGCTCGT
TCTGAGTAGTGTGTCGCCCATCAAGCTACAAGCTACCCGCCCGGTCAGTA
CGTGGATGTAGTGAAGCCGCCTCACGCGGTCAACAAGCAAAAGCGCATTC
CAGCCCTTGATCAAAACTCGCGAAATCCCGAAAGGCGATTCTGAATCCAG
TTCCTTGAGGTGTTTCAACATGTCCATTCTGAAGCACTTTAGTTTAAGTG
TTTCAGGTTCTGATTGTAACAAAAGAAAACCAAACGATTATGGAACCCCT
CCCTCCCCCCAATTTTTTACGTTCCGGACAATCTTGTCGCTCCACATTTC
GTAAGGAAATTGCGGAGACGGGGGACGGGGGAAAGAACCAAAATCGTCTT
TGAATGAACTGCCACCCTTTCCTGCTGGCCCAGGCATAGCAAATTTTGAG
TCTCCACAACCGGGAGACGCTTTCAAAAAGTTGCTTGGAACATCACCCAG
ACGATAGCATCACTCTGATGCACAGCAGCACCATCGCACATCGTGCACTC
CTGCATGTTACAGGTACCAACATTTGCGCACATCCCTTCCCCGTGTTTCT
TGGTTCACTGTGTTCACTCCAAATATTGTTGCGCTTGGGTATTTTTTTCT
TCCCGTGCGCGTTTTTTTTTTTCCTTTTTCTACCGCCGCTTGCCTGGTCG
GTTCCGTACTTCCAACAAACCCACGAGATATTTTCTGTTTTTGAAGCATA
CACGAAAACAACGCCTCCCTTGCGTTTTGGTTCCGTTCAAACTGACCTGA
AGTATCTCATTTGAGAGACGGTGAGCCCGGTCGACGCTAATGCTGCACCA
AGAGGAAATGCAGCACGAGCATGCACACACACACACACATGCGCGTACGC
GAAAAAATGCAACATGGTCCTCTCACACTTCCTTGTATGCGACAGACTGA
CACCGTAGGACTGACGCCGCCCTACCAGCAACGACACAACGCCTGCACCA
AAGAAAATGGAAGATGACCCACCAAAAGCCTGTAGGTGTGTTTCACCTAT
CATCTAGGATACGATTCTTCC back to topprotein sequence of EsuBft509_6a-0001 >EsuBft509_6 ID=EsuBft509_6|Name=EsuBft509_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=331bp
MKAPVCVVLLSHCCAAFTLSPATLLSLQRSCAFSAAEHVSSPQRSCSSSS
SRSNRCQPDRRRQRPPGGSRVPSFALGAAKDWLKGGSQGKSGPEGPKTGS
VAAGTSGKSGEVKKGPDGEDLDPRLYSVRIARATGIEWGTDISFSWVYIR
ALQPDGAAANCGEISVGDQLIAINDQTLTGAPFDVAMDAMIALEGPDVEF
TFFRGSTEELKEVVGAEAPRAEITVTVKQEGKPELVLTAPSGANLRDFLT
ENGINVYQSVTRWTNCKGKQLCGTCIVAIDEGLEGTTIRSVDESSTLRDN
PPNYRLSCVTNMYDDVTVTVFPPVGAAQWTR back to topmRNA from alignment at Scaffold_235:332799..338248- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft509_6a-0001 ID=EsuBft509_6a-0001|Name=EsuBft509_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5450bp|location=Sequence derived from alignment at Scaffold_235:332799..338248- (Ectocarpus subulatus male Bft15b)
GTAGGGTCCTGCTGCCGTGCTGTACGCTGTGTTTGGCTGGCGTTTCGCTA
TCACATCAACCATGAAGGCACCAGTTTGCGTTGTTCTCCTCTCCCATTGC
TGCGCCGCGTTCACGCTCTCGCCAGCGACATTGTTGTCCTTGCAAAGATC
ATGTGCCTTCTCCGCAGCAGAGCATGTGAGCTCTCCCCAGCGGAGCTGCA
GCAGCAGCAGCAGCAGAAGCAACAGGTGCCAACCTGATCGACGAAGGCAG
CGACCGCCTGGTGGTTCTCGCGTTCCTAGTTTCGCCCTGGGTGAGTTCTT
TGATGTTGGCATTTTGTGTCATGTTGTGATGTACATGCAGTTTCATGCCA
CTTGACAGCAGTGACCCCAACATCAACGCGATGCTTAGCCTCAGCAAGTC
CGCCCGTACTGCTGTAGACTTTAGCTGTACGATGCAAGCACAGCCCTCGT
TCTGTGTCTGACTGTCTCTCTCCTTGGCTGTATGTATACGTTGCTTGGTC
GGTATCGAGATCAACGATGAAGATGCCCATAGGCACGTTGACATTTTCCA
TCTTGGTTCTTAGCGTTTTCAGACGATGGCCATCACACGAAACAGGACTT
GAAAATTTTCCTACTACGGTAGAGGTCCCTATTTAGTGCCGGGGTGTGCG
CCGAAATTTCACCGGCACTAAACCGGACACCGGCACTATTCGAAGTACAG
AACGACTTGGTATTCCGACTTGGTATTCCAGTGTGTGCGAACCGAAAACA
CCGGCACTATTCAACCGGCACTAAACAGGGACCTCTACTGTACTCCAAAG
TGTACTGATGGGTAAAGGTAGTCCATAGCAGACCTACTCTGTAACACTCA
TAGCGCTCCGGAGGCACCGCACCACGTTAAATCAGAAGTCTTCGAAAGAG
AAAAGACTGTGTGTGCTCATAGCTTTGAGTGGTAAACCGCCAACAATGCA
ACGTTTCTCTTTTCATGCTGCGTCTTGCTTCCGCACCGCGAAACGAATGA
AGGTGCAGCTAAGGACTGGCTCAAAGGAGGCTCTCAAGGGAAGAGCGGAC
CGGAGGGACCCAAGACCGGATCTGTTGCAGGTGGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGNGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAAGATAAGAAGCGGGCCAGTCGACCTTTGTGACTGACC
TATCTTGCACCTGCAGAACGTGCGCACACCGATCCAGTCCGTGCCTCCTT
GCGTTGGGAGTGCACAATGCAACCCTCGATGCCCTTTGAACCGACCCTGC
CGTAGCAAGGGATGGCGGCCGGCTCGGGTGTATAAGGCGCGCTCTAGTAC
AAAGGGGCTCTACAATTTCACGATGCTCTCTTTCGCCGGAGTCGGGGGCC
TTTTAATCGATTGGTGGCCCAGAGGTAGACAGACAGCTTCGTATCCAATA
TCTGCCTTAGCTTCGCTCCGTTCGCTTGGAGCGCAATCGCTGGCGCTACA
CAATGCCGTGCCGTCGCGAGTACCTAGCAAACAGAGGCACCGCTCCCGGT
CTCGCCGGACGCCGTCCTTTTCGTGGACTCCGTAGCTACCCTAATCAGAC
GAACTTCCGCCCTCACATGCGAATACAACACTACATGACGCTTCGCGCAG
CAGGGACATCGGGCAAGAGCGGAGAGGTCAAGAAGGGTCCCGACGGAGAA
GACCTGGACCCCCGTCTCTACTCAGTCAGGATCGCACGCGCCACCGGGAT
CGAATGGGGCACGGACATCAGCTTCTCGTGGGTGTACATCCGGGCCCTGC
AGCCGGACGGCGCGGCGGCGAACTGCGGGGAAATCTCCGTCGGAGATCAG
GTGCGCCCGTTGCATCTTCTGTTGCTGCTGACCTCTCTGCAGCGTAGCTA
TAGCAGCGCTAGAAGTCATTTGGTTGTTGTTGGTTTCTCCCCGACCCTTT
CCTGCCTCTTTTCATTTCCTGGTGTATCGTGCCAGCAAACGGGCTGCATG
CACCAAAGCGATTGCAAACAGCAGCAGCAGCAGCAGTAGCAGCAACGGCT
GTGCGCGTTGGCTGAAAGGCCATGCCGCCAACGGGGTGAGGTACGGAGAC
ACAAACATATTTGGGCGTTTCACGCCTCAGCCCTCAATCCCCTCCGTCCG
TCTTCCTATCCCCGATGCGCACCACCCGTAGCTAATTGCAATAAACGACC
AGACGTTGACCGGGGCACCTTTCGACGTGGCGATGGACGCCATGATTGCT
CTAGAGGGCCCCGACGTCGAGTTCACCTTCTTCAGGGGCTCGACGGAGGA
GCTCAAGGAGGTGGTTGGTGAGTCAAGCAGCTAACTCTCGCTCGCTGCAT
GCACAGGGGTTTGGTTCCTTGTACTGCTCTCGCAGTACGAATGCAAAGTG
TAGGAGGAACCACTGGCATAGGCTGCTTGTGTTGTGTCTGTCCTTCCGAG
AGCGTGAATAGTTGGTCGAAAATTGAAGGAAGAAAAGTGTTTACACCGAG
GGAGCTCCACGTCGATGGTGGTGAACATGAAGAAGATCTAGCCAAGATGC
CCCGTGTGGAAGTGTTTTCGCAAGGGACGGCTCTGCTTCTTTCACTCGAG
GCGTCAAGAAGCTATTTAGAACGGCGATTTGTTTAACCGCATCGTGGCGC
GGCTTGTTCGCACGGGAACGCTCGCGCCCTGCTGAGCGAGCGCCAGGTAC
CAAACGTGCCGACCCTGTTTCCTCCCCTGCGGCGTATTGCATATGCCACT
TCCTGGCCCGAGCGGAACTCCTAGAGCGATCATTGCGTTCCTCCGGTGTT
TGCTGCCTCCTCTACACCGGCCCATCATCGGACTTTCTCTCCCGAGCGGC
ATGTTTTTGATCACCGACACCGATCCTCCTTGACGTCGCCGACGCACACA
TGCTCCACACATCCGGCAGGTGCGGAAGCCCCCCGGGCAGAGATCACGGT
TACCGTCAAGCAGGAAGGGAAGCCGGAGTTGGTCCTCACGGCGCCCTCGG
GGGCCAACCTCCGCGACTTTCTCACCGAGAACGGCATCAACGTCTACCAG
TCCGTCACGCGCTGGACCAACTGCAAGGGGAAGCAGCTGTGCGGGTGAGA
GAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGAGAGGGA
GAGAGGCGCGCTAACGTACGAAATTCCGGAAGCATGTGTTTTTTGAGAAC
GTGCCGTGAGTGTTTCCGCCGGTGGGGAAGGCTGAGATTTTTCTTTTTGA
CGGCGTCGACTTTGTTTTTTCGTGGCCGTCCGACCGAAAAAATGTGTCAT
GTCGCTCGTCGAGTGTACGAAAGTGTGTCGAGCTGTTGGGGCGTACTGTC
TGTTTCAAAGTGGTGTGGATGATGGTTGTTTGCCACGAATACGTGCTTTT
GTGCCTGCTGCGTGCGTTCGTTGTTGCTTCATCGACCCCCACGCAAAATT
GTTTCCTATCGGCATGCATTCCCCTCGTGACGAACATGCATGTTTTGTCT
CGCTTTGCACCTATGCGGACGTATCTCTCCAGTCTACCTTTGTGTACCCT
TGAGTTCCTCTGCTTGACACATCTTCTCTCTTGTTCCCTCTCTACCCCCC
TCCCCTCTCTGTCTCTGCCTGACTCTTCTTCTTCGCTGTTTCGTCATTGG
TGCCGCGTGTTTGTCTCTCCCGCTATTTCTCTCTCCTCTCCTTCGCGGTA
CACAAAAGCACGTGCATCGTGGCGATCGACGAGGGTTTGGAGGGCACGAC
AATCCGCTCGGTCGACGAGAGCTCCACGCTCAGAGACAACCCGCCCAACT
ACCGCCTATCGTGCGTCACCAACATGTACGACGACGTGACGGTCACGGTT
TTCCCGCCAGTTGGGGCCGCTCAATGGACAAGATGAAAACAAAACAAGCA
TTTCGGCGACCCTCGGGTCGTTTGTCGGCGTGGTTGCGTTTCGCCTGCAG
AAAGCGACGCGCCGGGGGACAGGGGGGGCAGATCGTGGACGTAGCAGCAG
CACTGCAATGAGAGGGTGGGACACCTACACAAGCCTGCCAGATTGTTTGC
TTTGTGTTTTTGTGGTGCATGTCCCGGGTGTTGGCAAGCGCAGTTGTGAC
GATGTGTATCGCCTTTCGGTGGGGGACGTTTTGCGCACCTCTTTCGCTTC
TCTCTGTTGTTGCAAAAAGTCGCTGGTCACTTCACCCGGCTCTTGTAGGA
TGTACGGTTACCAAAGTTATGGGAACCATAGCTCGCTGCTGCAGCAAGAG
AAGTGGCGCTGCTGCTGTTGTTGTATTTACACTCTACCCGTATCACGTAT
GCATAAGCTCAAAATTGAGTCTTGTGTTCGCTGTCGAGGAGCTTCGAACC
GAGGTTAGGTGAACTATTCACTCCAACAACGATTTTAGTTTTTTGCGAGC
AGACACCATTTCGTAGCAGGATTGCTCGTTCTGAGTAGTGTGTCGCCCAT
CAAGCTACAAGCTACCCGCCCGGTCAGTACGTGGATGTAGTGAAGCCGCC
TCACGCGGTCAACAAGCAAAAGCGCATTCCAGCCCTTGATCAAAACTCGC
GAAATCCCGAAAGGCGATTCTGAATCCAGTTCCTTGAGGTGTTTCAACAT
GTCCATTCTGAAGCACTTTAGTTTAAGTGTTTCAGGTTCTGATTGTAACA
AAAGAAAACCAAACGATTATGGAACCCCTCCCTCCCCCCAATTTTTTACG
TTCCGGACAATCTTGTCGCTCCACATTTCGTAAGGAAATTGCGGAGACGG
GGGACGGGGGAAAGAACCAAAATCGTCTTTGAATGAACTGCCACCCTTTC
CTGCTGGCCCAGGCATAGCAAATTTTGAGTCTCCACAACCGGGAGACGCT
TTCAAAAAGTTGCTTGGAACATCACCCAGACGATAGCATCACTCTGATGC
ACAGCAGCACCATCGCACATCGTGCACTCCTGCATGTTACAGGTACCAAC
ATTTGCGCACATCCCTTCCCCGTGTTTCTTGGTTCACTGTGTTCACTCCA
AATATTGTTGCGCTTGGGTATTTTTTTCTTCCCGTGCGCGTTTTTTTTTT
TCCTTTTTCTACCGCCGCTTGCCTGGTCGGTTCCGTACTTCCAACAAACC
CACGAGATATTTTCTGTTTTTGAAGCATACACGAAAACAACGCCTCCCTT
GCGTTTTGGTTCCGTTCAAACTGACCTGAAGTATCTCATTTGAGAGACGG
TGAGCCCGGTCGACGCTAATGCTGCACCAAGAGGAAATGCAGCACGAGCA
TGCACACACACACACACATGCGCGTACGCGAAAAAATGCAACATGGTCCT
CTCACACTTCCTTGTATGCGACAGACTGACACCGTAGGACTGACGCCGCC
CTACCAGCAACGACACAACGCCTGCACCAAAGAAAATGGAAGATGACCCA
CCAAAAGCCTGTAGGTGTGTTTCACCTATCATCTAGGATACGATTCTTCC
back to topCoding sequence (CDS) from alignment at Scaffold_235:332799..338248- >EsuBft509_6a-0001 ID=EsuBft509_6a-0001|Name=EsuBft509_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=996bp|location=Sequence derived from alignment at Scaffold_235:332799..338248- (Ectocarpus subulatus male Bft15b)
ATGAAGGCACCAGTTTGCGTTGTTCTCCTCTCCCATTGCTGCGCCGCGTT
CACGCTCTCGCCAGCGACATTGTTGTCCTTGCAAAGATCATGTGCCTTCT
CCGCAGCAGAGCATGTGAGCTCTCCCCAGCGGAGCTGCAGCAGCAGCAGC
AGCAGAAGCAACAGGTGCCAACCTGATCGACGAAGGCAGCGACCGCCTGG
TGGTTCTCGCGTTCCTAGTTTCGCCCTGGGTGCAGCTAAGGACTGGCTCA
AAGGAGGCTCTCAAGGGAAGAGCGGACCGGAGGGACCCAAGACCGGATCT
GTTGCAGCAGGGACATCGGGCAAGAGCGGAGAGGTCAAGAAGGGTCCCGA
CGGAGAAGACCTGGACCCCCGTCTCTACTCAGTCAGGATCGCACGCGCCA
CCGGGATCGAATGGGGCACGGACATCAGCTTCTCGTGGGTGTACATCCGG
GCCCTGCAGCCGGACGGCGCGGCGGCGAACTGCGGGGAAATCTCCGTCGG
AGATCAGCTAATTGCAATAAACGACCAGACGTTGACCGGGGCACCTTTCG
ACGTGGCGATGGACGCCATGATTGCTCTAGAGGGCCCCGACGTCGAGTTC
ACCTTCTTCAGGGGCTCGACGGAGGAGCTCAAGGAGGTGGTTGGTGCGGA
AGCCCCCCGGGCAGAGATCACGGTTACCGTCAAGCAGGAAGGGAAGCCGG
AGTTGGTCCTCACGGCGCCCTCGGGGGCCAACCTCCGCGACTTTCTCACC
GAGAACGGCATCAACGTCTACCAGTCCGTCACGCGCTGGACCAACTGCAA
GGGGAAGCAGCTGTGCGGCACGTGCATCGTGGCGATCGACGAGGGTTTGG
AGGGCACGACAATCCGCTCGGTCGACGAGAGCTCCACGCTCAGAGACAAC
CCGCCCAACTACCGCCTATCGTGCGTCACCAACATGTACGACGACGTGAC
GGTCACGGTTTTCCCGCCAGTTGGGGCCGCTCAATGGACAAGATGA back to top
|