EsuBft509_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft509_11a-0001
Unique Name	EsuBft509_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_235	contig	Scaffold_235:273035..274945 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FNG2
ProteomeId	EsuBft509_11
Protein domains	IPR002616
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	184
Hectar predicted targeting category	other localisation
Evalue	4.82e-30
EggNOG OGs	COG0343@1\|root,KOG3908@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG rclass	RC00063
KEGG ko	ko:K00773
KEGG Reaction	R03789,R10209
EC	2.4.2.29
Description	tRNA-guanine transglycosylation
COG category	J
BRITE	ko00000,ko01000,ko03016

Cross References

External references for this mRNA


Database	Accession
GO	0008479
GO	0008616

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft509_11a	EsuBft509_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_235 273035..274945 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_11a-0001-exon	EsuBft509_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 273035..273330 -
EsuBft509_11a-0001-exon	agat-exon-86024	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 273394..274945 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_11a-0001-exon	agat-three_prime_utr-17414	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_235 273035..273330 -
EsuBft509_11a-0001-exon	agat-three_prime_utr-17415	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_235 273394..274735 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_11a-0001-cds	EsuBft509_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_235 274736..274945 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_11a-0001	EsuBft509_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_235 274736..274945 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_235:273035..274945-
coding sequence from alignment at Scaffold_235:273035..274945-

spliced messenger RNA

>EsuBft509_11a-0001 ID=EsuBft509_11a-0001|Name=EsuBft509_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1848bp|location=Sequence derived from alignment at Scaffold_235:273035..274945- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTCTCCCAGCACAATGTCTTCTTCATGAACGAGCTCATGACGTC
GATTCGGACGGCCATTGCCGAGGGCAGGCTGGCTGAGGAAGAGAATAAGT
GGCTCGCGCCGGGGCTACGGGCTAGGGATTTCCACAAGAGGGCGGCAGCG
GAGGCGGCGGCGGCGGCGGAAGCGGCTACAGGAGAGGAAAGCGGGGAAAC
CCATCACTAAGCTTGGAATCGGGTGAATGATTGATATGATTAATCGATTG
ATTGATTTTCGGAGGGGGGAGGGGAGGGCAGTAGATGATGACTGAGATTC
CAAGTTCGATAGGTCCGTTGATCACGTCAGGATGGCGGCTGTAGAGGCTT
CGCCAGCGGTAGGTTGGGCGGGGGGGGGCGTACTCATGGTTTGCATTCCA
TAATTGCTAGGGATGGGGAGGGGGAGTCTTGACACGGTAGGAGGGAGGGT
GAATATTGGCTTGTGTATTTGCGACCACGTACTGCAAGTGCTGCGGAAAT
GCTGTACATGGAACGTAGTGGTACTCGATTGCTCCCTTAGTCCTTGGGTG
TACAAAGGTTTGTTGCGTCCCTTGTACAGGTGCGTCCTGTTTCTGTCTGG
CGGCTGCGACTGCTCCGGTCATGCCACTGCTGAGCGTTCTTACGTGCTTA
TTTGTGTGTAAAAAACGGCTATGGTACGGTGCCCGCTCTACGGTTGTAGA
CGACTTTTGATTGGAAAACCAAGGAAGGCGTTTGACCGCTTCGAAAGAAG
ATGAGAAAAGCCGGGAGGCTTTCGCCGCTTGGATTGATACCCCCCCCCCC
ACGAGTACATTTTGGGCCGAAGTGTTGTGTTTGTAGGAGTACCATGTTAT
TTTGCTGGCCACCGGCGGACTCGTTTCGACGCTAAAGAAATAGCTCTACC
CTAAAGGGTTGTCGCTGGGGGGAGGGGGGCACGACTTGTGGTTCAGATGT
TGGAAAAATCAAAACGAAACTTTTCGTTCTTCGTGGCCAGGACGCAGCAA
GCTTCCCCGGCTGCTTTCTCCTTGCCCTTGCTTCTTGAAGGTTAGGTTGG
TCAGTTGTTGTTATTTTTTGACAATCGATGTGATGACTGTTTCTAGTGGG
GGCCTCAGCGGAGAGGGAGTGCGCGCGCGCATGTATGTGTGTGTGTGCCG
CGGGAGCTTAGTGGCGTATTCACGAATTTTCAGAACGCCAGTCCTCCAGT
GTGGTGCCCCCCGCCGCGTGTCTTGTTTTTACGCCCCCCGCCCCCTCCTC
TTGCATTGTTTGCGGAGGTCACGTTTTACGCAAGCTTTTCTTTGCCTTTG
AGACGGCAGCTGTTGTTTTTCTGTACTCCCTTGTCGTTGTGATATACTCC
ATATTCAATATTCAGCACTGATAATGCTGTTGCTGCAGCAACTCGGCAAA
CGGCCACGAAATTTTCCATTTTAGGCATAAAATGTAGGCTAGGATGAGAT
ATCTCCATTTTACCATCACATGTAGGTGTAGGTGATGAGCGATTCCGTGC
ATTCGACATGTTATTTATTTGTTGTACCCGCGGGTGACAATGCACATCCA
GGGGAGTTCGTCGCGAGAGTATATACCTACGGGAAACGTTTTTCGGGTGG
GGAGGGTCTAGGTCTGTGCGGTTTTGTTATGCCGTGTCTCGTACACAGCG
TTGCAGAGCGCTTTTGCTTGTAGTCGAAATATTGAACTGTACCAGGCTTT
TACACTAGGCAATTAATTGCACGTTGCAGTTGGGCGAATGTCAATGTCGG
GTTGTAGTACGCTGGTCTGTACCACTAACCACGCAGTAAGGCTTGGTATT
GTGCAGCGCGAAGAAAGGGCGGCGGGGGTGAATACGAGACTGATTCTG

protein sequence of EsuBft509_11a-0001

>EsuBft509_11 ID=EsuBft509_11|Name=EsuBft509_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MLVSQHNVFFMNELMTSIRTAIAEGRLAEEENKWLAPGLRARDFHKRAAA
EAAAAAEAATGEESGETHH

mRNA from alignment at Scaffold_235:273035..274945-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft509_11a-0001 ID=EsuBft509_11a-0001|Name=EsuBft509_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1911bp|location=Sequence derived from alignment at Scaffold_235:273035..274945- (Ectocarpus subulatus male Bft15b)
ATGCTGGTCTCCCAGCACAATGTCTTCTTCATGAACGAGCTCATGACGTC
GATTCGGACGGCCATTGCCGAGGGCAGGCTGGCTGAGGAAGAGAATAAGT
GGCTCGCGCCGGGGCTACGGGCTAGGGATTTCCACAAGAGGGCGGCAGCG
GAGGCGGCGGCGGCGGCGGAAGCGGCTACAGGAGAGGAAAGCGGGGAAAC
CCATCACTAAGCTTGGAATCGGGTGAATGATTGATATGATTAATCGATTG
ATTGATTTTCGGAGGGGGGAGGGGAGGGCAGTAGATGATGACTGAGATTC
CAAGTTCGATAGGTCCGTTGATCACGTCAGGATGGCGGCTGTAGAGGCTT
CGCCAGCGGTAGGTTGGGCGGGGGGGGGCGTACTCATGGTTTGCATTCCA
TAATTGCTAGGGATGGGGAGGGGGAGTCTTGACACGGTAGGAGGGAGGGT
GAATATTGGCTTGTGTATTTGCGACCACGTACTGCAAGTGCTGCGGAAAT
GCTGTACATGGAACGTAGTGGTACTCGATTGCTCCCTTAGTCCTTGGGTG
TACAAAGGTTTGTTGCGTCCCTTGTACAGGTGCGTCCTGTTTCTGTCTGG
CGGCTGCGACTGCTCCGGTCATGCCACTGCTGAGCGTTCTTACGTGCTTA
TTTGTGTGTAAAAAACGGCTATGGTACGGTGCCCGCTCTACGGTTGTAGA
CGACTTTTGATTGGAAAACCAAGGAAGGCGTTTGACCGCTTCGAAAGAAG
ATGAGAAAAGCCGGGAGGCTTTCGCCGCTTGGATTGATACCCCCCCCCCC
ACGAGTACATTTTGGGCCGAAGTGTTGTGTTTGTAGGAGTACCATGTTAT
TTTGCTGGCCACCGGCGGACTCGTTTCGACGCTAAAGAAATAGCTCTACC
CTAAAGGGTTGTCGCTGGGGGGAGGGGGGCACGACTTGTGGTTCAGATGT
TGGAAAAATCAAAACGAAACTTTTCGTTCTTCGTGGCCAGGACGCAGCAA
GCTTCCCCGGCTGCTTTCTCCTTGCCCTTGCTTCTTGAAGGTTAGGTTGG
TCAGTTGTTGTTATTTTTTGACAATCGATGTGATGACTGTTTCTAGTGGG
GGCCTCAGCGGAGAGGGAGTGCGCGCGCGCATGTATGTGTGTGTGTGCCG
CGGGAGCTTAGTGGCGTATTCACGAATTTTCAGAACGCCAGTCCTCCAGT
GTGGTGCCCCCCGCCGCGTGTCTTGTTTTTACGCCCCCCGCCCCCTCCTC
TTGCATTGTTTGCGGAGGTCACGTTTTACGCAAGCTTTTCTTTGCCTTTG
AGACGGCAGCTGTTGTTTTTCTGTACTCCCTTGTCGTTGTGATATACTCC
ATATTCAATATTCAGCACTGATAATGCTGTTGCTGCAGCAACTCGGCAAA
CGGCCACGAAATTTTCCATTTTAGGCATAAAATGTAGGCTAGGATGAGAT
ATCTCCATTTTACCATCACATGTAGGTGTAGGTGATGAGCGATTCCGTGC
ATTCGACATGTTATTTATTTGTTGTACCCGCGGGTGACAATGCACATCCA
GGGTATGTACAGAGGAATTGAGGACTTTTCGTCTTCAAGAGTTTTTCACG
TGTACCAGGTAGCAGGGAGTTCGTCGCGAGAGTATATACCTACGGGAAAC
GTTTTTCGGGTGGGGAGGGTCTAGGTCTGTGCGGTTTTGTTATGCCGTGT
CTCGTACACAGCGTTGCAGAGCGCTTTTGCTTGTAGTCGAAATATTGAAC
TGTACCAGGCTTTTACACTAGGCAATTAATTGCACGTTGCAGTTGGGCGA
ATGTCAATGTCGGGTTGTAGTACGCTGGTCTGTACCACTAACCACGCAGT
AAGGCTTGGTATTGTGCAGCGCGAAGAAAGGGCGGCGGGGGTGAATACGA
GACTGATTCTG

Coding sequence (CDS) from alignment at Scaffold_235:273035..274945-

>EsuBft509_11a-0001 ID=EsuBft509_11a-0001|Name=EsuBft509_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_235:273035..274945- (Ectocarpus subulatus male Bft15b)
ATGCTGGTCTCCCAGCACAATGTCTTCTTCATGAACGAGCTCATGACGTC
GATTCGGACGGCCATTGCCGAGGGCAGGCTGGCTGAGGAAGAGAATAAGT
GGCTCGCGCCGGGGCTACGGGCTAGGGATTTCCACAAGAGGGCGGCAGCG
GAGGCGGCGGCGGCGGCGGAAGCGGCTACAGGAGAGGAAAGCGGGGAAAC
CCATCACTAA