EsuBft505_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft505_8a-0001
Unique Name	EsuBft505_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:56769..59193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft505_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	196
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-19_002170.2
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft505_8a	EsuBft505_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 56769..59193 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_8a-0001-exon	agat-exon-55807	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 56769..56799 +
EsuBft505_8a-0001-exon	EsuBft505_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 57259..59193 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_8a-0001-cds	EsuBft505_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 56769..56799 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_8a-0001-exon	agat-three_prime_utr-17362	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 58653..59193 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_8a-0001	EsuBft505_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 56769..58652 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:56769..59193+
coding sequence from alignment at Scaffold_630:56769..59193+

spliced messenger RNA

>EsuBft505_8a-0001 ID=EsuBft505_8a-0001|Name=EsuBft505_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1966bp|location=Sequence derived from alignment at Scaffold_630:56769..59193+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACACGCTAACCTCCTGACCACTGAAAGAGGCGCGCCGGCGGCGGC
GGCGGCGGCGGCCGACGATGAAGCGACGGCCGAGACCAAGCGAGCGGCAA
TCGAAGCCACGCTTCGCGTGGTCAACGAGCACGTCTTCCCAACGTGCTTG
CGGACGGGAAACGACGACCCCGGCGACGACCCCGGCGACGACGCCATCGA
CAACGACGCCATCGACAACGACGCCATCGACAACGACGACGGCAGCAGCA
GCAGCAACGACGGTGGCAATGGCGGGGGACAGACCGGGGTACCGTCCGCG
GCGGCGGCGGCGGCAGCGGCCTTGCCCGCCCCCGCCGCCGTCATCCTCGC
GCGAGCTTCCGTCCTCGCCGAGTCGCTCTGCGCCTGGCGGCACTTCGACC
TGCCCCTCCCGCCGCTCGAGGCGGCCCTACGGCGGCGGCTGGGAGACCGG
GATGGCGTACGCGTGCTTGCGGCGGTCTTCTTCCCGCAGCTGTCTCGCGA
CCACACACAACTGGGCCTTGTCTCAGGTGTTCCAACGGGAGGAGGCCCGC
GGGGTAGGGGGGGGTCGCGGGATGGATGGCGAGGGCAATCGTCGCTTGCT
GCGACTGGCCCTCTGCTGGCAGCAGCAGGGACGGCGGTGACCCTATCGTC
GCTGGGGCCCACCGTCGCACAGATGGACAAGGCACGGGAGCTGGGTCTCG
CGCCTCACTTTTTGCTCGCGCTAATGCGGTCTGCGGGAAAAACGCCGGCA
GCGTCAGCCAGAGGGCGCCCCGCTGCACAGCAGACCGACAGTCCCCCGAA
CGTCGCTGGACCGGCTACGGAGCCGTCCCCGCTGACCCTTATGCTCGACC
ACCGGGCGGGTAACGGCGGCGCATCATCGTCTTGGCTAGCGGCGGCAGCG
CCCGGGCGCGAACGGTCGACGTCAGCCGCGGCGGGGAGGAGGAGGATGAG
AGGAGACCGCACGGATGCCGCCAGCGCTTGGCCCCGGGGTCCCACCAACA
GCGGCGCCGCGCAAGGAGACGCGCCGCCATCATCGTCGTCTGCCGCCGCT
GACGGTGGTTGTTTGGAGGACCCTACCATCTGGGTCTTTTCCTGCGGGCA
CGAGTTCTCGCTGGGGCACCTTCTCCGGAGCGTGGTGCCGGCGAGCGTCT
CGAGCGTCCGCCAGGCCACGGCCTCCCTGCAGCGCACGCAGCAGGTGGTG
GCGCTGGAGTACGAGCGGGGCCGCAGCGGCGCCGGGGCGGCGTGCCCGGA
GTGCGCGGCAAAGGAGCTGGTGCGGCTGGCCGCGGCGGCGGCGGCGACGG
CCGGCGCCTCCATGAAGAGGGGGGCGGCGGCGGGTGGGGTGGTGGCAGCG
GGTGGCATTCCTGCCCCGCCGCCTCTGCCGCCGGCACGGCAGCTGCAGAT
GCGAGACACCCAGGGGGTTCGATAGCGGGACTGCTGTGTGGGTTTCGCGC
TGCGCTGCTTTGGGGATCGTCGGCCTCTCGGTGCGGGGCGAGCGGAGAGG
GGAGGAGTGCTTGTGTCAACAGCGGGTGGAGTTGCCTACCTCTTTGCCTC
TCTGGGCGCCGATTCGTCCTTCGCATTTTGCTGCAGCGTGTTTTTTGCGT
GTGTGGTGTTCACCCCCCTCCCACCCTATTGTTCGGGTAGCTTGGCTCCC
GTCGTGAACGTTGTTGGCGGATCTTCACCACACTTTTCCTTTTCCGGTTG
GTCGGGTTGTACTCGATTCGGGTCAGCGCGAAAGCCGTGCTTTTTTAGGA
GGCAACACTCGAGGACTGCTGTGGTGACAGCGTTGGAGTTTCACTTCAGA
CAGAAGGGTGCATTTCCACAAAAAAAACATGACCACCCTAACATCGGAAC
CGGCCTTATATTCCCGGTCAGAGGGAGTATACTAAAGGCAGAGAAATGTG
AACGGCGTTTCATCACACCCACTTCAAGATCGACGAGGGAAACGAACAAT
CCGCATCGCGAGAGAT

protein sequence of EsuBft505_8a-0001

>EsuBft505_8 ID=EsuBft505_8|Name=EsuBft505_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=474bp
MEHANLLTTERGAPAAAAAAADDEATAETKRAAIEATLRVVNEHVFPTCL
RTGNDDPGDDPGDDAIDNDAIDNDAIDNDDGSSSSNDGGNGGGQTGVPSA
AAAAAAALPAPAAVILARASVLAESLCAWRHFDLPLPPLEAALRRRLGDR
DGVRVLAAVFFPQLSRDHTQLGLVSGVPTGGGPRGRGGSRDGWRGQSSLA
ATGPLLAAAGTAVTLSSLGPTVAQMDKARELGLAPHFLLALMRSAGKTPA
ASARGRPAAQQTDSPPNVAGPATEPSPLTLMLDHRAGNGGASSSWLAAAA
PGRERSTSAAAGRRRMRGDRTDAASAWPRGPTNSGAAQGDAPPSSSSAAA
DGGCLEDPTIWVFSCGHEFSLGHLLRSVVPASVSSVRQATASLQRTQQVV
ALEYERGRSGAGAACPECAAKELVRLAAAAAATAGASMKRGAAAGGVVAA
GGIPAPPPLPPARQLQMRDTQGVR

mRNA from alignment at Scaffold_630:56769..59193+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft505_8a-0001 ID=EsuBft505_8a-0001|Name=EsuBft505_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2425bp|location=Sequence derived from alignment at Scaffold_630:56769..59193+ (Ectocarpus subulatus male Bft15b)
ATGGAACACGCTAACCTCCTGACCACTGAAAGTACATCAGTTTCTAGAGG
TGTCATGGTCTGACCTGTGTGCGCGTGTTTCTGTGGCAAGCATCGGTGGC
GCCAACCGGCTGGCCAAGTAGAATGCATCAGTCTTTCAGCGGGATACAAG
AAATGGGAGCACGCTTTCGAGATGCACTTCTTTGTCAACCGTGCGCTAAC
CGGCTGAACGATGAAAATACGCCGGTCTTTGTGAATGCACAAAGTAGAAA
CGCCAACAAAATCTCTTGTCATTGTGAGCCAGCCCGCTTGGCTGCGTGGG
TTCCCCTAGTCCCCTAGTTTAGTTCGAATCCTCACAACCTAGCTTCTCAC
TCCTCTTTGTTGTCTTTTGCGCTCCTAGGAGGCGCGTGGTGAACAAGAAG
CACCGGGCGAGGCCGCTCTCATTCTCGGCGGAAAAGGTCGTCCCTTCCCC
GGCGTCGAACAGTCTCTACCAGGACCGACGACAACAACAGGAGGCGCGCC
GGCGGCGGCGGCGGCGGCGGCCGACGATGAAGCGACGGCCGAGACCAAGC
GAGCGGCAATCGAAGCCACGCTTCGCGTGGTCAACGAGCACGTCTTCCCA
ACGTGCTTGCGGACGGGAAACGACGACCCCGGCGACGACCCCGGCGACGA
CGCCATCGACAACGACGCCATCGACAACGACGCCATCGACAACGACGACG
GCAGCAGCAGCAGCAACGACGGTGGCAATGGCGGGGGACAGACCGGGGTA
CCGTCCGCGGCGGCGGCGGCGGCAGCGGCCTTGCCCGCCCCCGCCGCCGT
CATCCTCGCGCGAGCTTCCGTCCTCGCCGAGTCGCTCTGCGCCTGGCGGC
ACTTCGACCTGCCCCTCCCGCCGCTCGAGGCGGCCCTACGGCGGCGGCTG
GGAGACCGGGATGGCGTACGCGTGCTTGCGGCGGTCTTCTTCCCGCAGCT
GTCTCGCGACCACACACAACTGGGCCTTGTCTCAGGTGTTCCAACGGGAG
GAGGCCCGCGGGGTAGGGGGGGGTCGCGGGATGGATGGCGAGGGCAATCG
TCGCTTGCTGCGACTGGCCCTCTGCTGGCAGCAGCAGGGACGGCGGTGAC
CCTATCGTCGCTGGGGCCCACCGTCGCACAGATGGACAAGGCACGGGAGC
TGGGTCTCGCGCCTCACTTTTTGCTCGCGCTAATGCGGTCTGCGGGAAAA
ACGCCGGCAGCGTCAGCCAGAGGGCGCCCCGCTGCACAGCAGACCGACAG
TCCCCCGAACGTCGCTGGACCGGCTACGGAGCCGTCCCCGCTGACCCTTA
TGCTCGACCACCGGGCGGGTAACGGCGGCGCATCATCGTCTTGGCTAGCG
GCGGCAGCGCCCGGGCGCGAACGGTCGACGTCAGCCGCGGCGGGGAGGAG
GAGGATGAGAGGAGACCGCACGGATGCCGCCAGCGCTTGGCCCCGGGGTC
CCACCAACAGCGGCGCCGCGCAAGGAGACGCGCCGCCATCATCGTCGTCT
GCCGCCGCTGACGGTGGTTGTTTGGAGGACCCTACCATCTGGGTCTTTTC
CTGCGGGCACGAGTTCTCGCTGGGGCACCTTCTCCGGAGCGTGGTGCCGG
CGAGCGTCTCGAGCGTCCGCCAGGCCACGGCCTCCCTGCAGCGCACGCAG
CAGGTGGTGGCGCTGGAGTACGAGCGGGGCCGCAGCGGCGCCGGGGCGGC
GTGCCCGGAGTGCGCGGCAAAGGAGCTGGTGCGGCTGGCCGCGGCGGCGG
CGGCGACGGCCGGCGCCTCCATGAAGAGGGGGGCGGCGGCGGGTGGGGTG
GTGGCAGCGGGTGGCATTCCTGCCCCGCCGCCTCTGCCGCCGGCACGGCA
GCTGCAGATGCGAGACACCCAGGGGGTTCGATAGCGGGACTGCTGTGTGG
GTTTCGCGCTGCGCTGCTTTGGGGATCGTCGGCCTCTCGGTGCGGGGCGA
GCGGAGAGGGGAGGAGTGCTTGTGTCAACAGCGGGTGGAGTTGCCTACCT
CTTTGCCTCTCTGGGCGCCGATTCGTCCTTCGCATTTTGCTGCAGCGTGT
TTTTTGCGTGTGTGGTGTTCACCCCCCTCCCACCCTATTGTTCGGGTAGC
TTGGCTCCCGTCGTGAACGTTGTTGGCGGATCTTCACCACACTTTTCCTT
TTCCGGTTGGTCGGGTTGTACTCGATTCGGGTCAGCGCGAAAGCCGTGCT
TTTTTAGGAGGCAACACTCGAGGACTGCTGTGGTGACAGCGTTGGAGTTT
CACTTCAGACAGAAGGGTGCATTTCCACAAAAAAAACATGACCACCCTAA
CATCGGAACCGGCCTTATATTCCCGGTCAGAGGGAGTATACTAAAGGCAG
AGAAATGTGAACGGCGTTTCATCACACCCACTTCAAGATCGACGAGGGAA
ACGAACAATCCGCATCGCGAGAGAT

Coding sequence (CDS) from alignment at Scaffold_630:56769..59193+

>EsuBft505_8a-0001 ID=EsuBft505_8a-0001|Name=EsuBft505_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1425bp|location=Sequence derived from alignment at Scaffold_630:56769..59193+ (Ectocarpus subulatus male Bft15b)
ATGGAACACGCTAACCTCCTGACCACTGAAAGAGGCGCGCCGGCGGCGGC
GGCGGCGGCGGCCGACGATGAAGCGACGGCCGAGACCAAGCGAGCGGCAA
TCGAAGCCACGCTTCGCGTGGTCAACGAGCACGTCTTCCCAACGTGCTTG
CGGACGGGAAACGACGACCCCGGCGACGACCCCGGCGACGACGCCATCGA
CAACGACGCCATCGACAACGACGCCATCGACAACGACGACGGCAGCAGCA
GCAGCAACGACGGTGGCAATGGCGGGGGACAGACCGGGGTACCGTCCGCG
GCGGCGGCGGCGGCAGCGGCCTTGCCCGCCCCCGCCGCCGTCATCCTCGC
GCGAGCTTCCGTCCTCGCCGAGTCGCTCTGCGCCTGGCGGCACTTCGACC
TGCCCCTCCCGCCGCTCGAGGCGGCCCTACGGCGGCGGCTGGGAGACCGG
GATGGCGTACGCGTGCTTGCGGCGGTCTTCTTCCCGCAGCTGTCTCGCGA
CCACACACAACTGGGCCTTGTCTCAGGTGTTCCAACGGGAGGAGGCCCGC
GGGGTAGGGGGGGGTCGCGGGATGGATGGCGAGGGCAATCGTCGCTTGCT
GCGACTGGCCCTCTGCTGGCAGCAGCAGGGACGGCGGTGACCCTATCGTC
GCTGGGGCCCACCGTCGCACAGATGGACAAGGCACGGGAGCTGGGTCTCG
CGCCTCACTTTTTGCTCGCGCTAATGCGGTCTGCGGGAAAAACGCCGGCA
GCGTCAGCCAGAGGGCGCCCCGCTGCACAGCAGACCGACAGTCCCCCGAA
CGTCGCTGGACCGGCTACGGAGCCGTCCCCGCTGACCCTTATGCTCGACC
ACCGGGCGGGTAACGGCGGCGCATCATCGTCTTGGCTAGCGGCGGCAGCG
CCCGGGCGCGAACGGTCGACGTCAGCCGCGGCGGGGAGGAGGAGGATGAG
AGGAGACCGCACGGATGCCGCCAGCGCTTGGCCCCGGGGTCCCACCAACA
GCGGCGCCGCGCAAGGAGACGCGCCGCCATCATCGTCGTCTGCCGCCGCT
GACGGTGGTTGTTTGGAGGACCCTACCATCTGGGTCTTTTCCTGCGGGCA
CGAGTTCTCGCTGGGGCACCTTCTCCGGAGCGTGGTGCCGGCGAGCGTCT
CGAGCGTCCGCCAGGCCACGGCCTCCCTGCAGCGCACGCAGCAGGTGGTG
GCGCTGGAGTACGAGCGGGGCCGCAGCGGCGCCGGGGCGGCGTGCCCGGA
GTGCGCGGCAAAGGAGCTGGTGCGGCTGGCCGCGGCGGCGGCGGCGACGG
CCGGCGCCTCCATGAAGAGGGGGGCGGCGGCGGGTGGGGTGGTGGCAGCG
GGTGGCATTCCTGCCCCGCCGCCTCTGCCGCCGGCACGGCAGCTGCAGAT
GCGAGACACCCAGGGGGTTCGATAG