EsuBft505_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft505_5a-0001
Unique Name	EsuBft505_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:80829..83088 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft505_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	206
Evalue	5.86e-22
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft505_5a	EsuBft505_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 80829..83088 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_5a-0001-exon	EsuBft505_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 80829..81272 +
EsuBft505_5a-0001-exon	agat-exon-55792	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 81471..83088 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_5a-0001-cds	EsuBft505_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 80829..81272 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_5a-0001-exon	agat-three_prime_utr-17359	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 81480..83088 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_5a-0001	EsuBft505_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 80829..81479 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:80829..83088+
coding sequence from alignment at Scaffold_630:80829..83088+

spliced messenger RNA

>EsuBft505_5a-0001 ID=EsuBft505_5a-0001|Name=EsuBft505_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2062bp|location=Sequence derived from alignment at Scaffold_630:80829..83088+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCTCGATTTCTCAACTGCCAACTACTTCATTGAGGCGCTTTCCGA
AGATGCGCAGACGCCGGGCATCCTCGAATGCCGCCTCCCCCCTCGAAGCA
CCAACCAGCCCCAACAGGCATATCTTGTCTCGATGTCGAGGTTGCCGAGA
ATTGTATGGGAGGCGAAGTGGGCAAACAAAACGAGGGGTAGACAACCCAC
GGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACG
AGGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATA
TATGTTGCTTGTGCCGAGAGAGAACAGAATCTAAGGAAAGAATCCAAGGA
TAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCA
AGGATTACCTACATGGACCAATGGATGTAGGAACAAAGCTTAAGGGAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCGCTCC
CCATGGTTACAGGGTCATCTCCAGGGCAATCTGGGCGATTTTGGACCATT
TTCGACTACACCTACCGCTTTCAGCGCAAAACAGGCATCATTATTCCTCA
GTTTTTTTGTTCGTGGTTGATTAGTGTTTCACCCCAACTGGACAACACTT
CCTTCAAAAAATCCAACCTTGTTCGCTGTTCTACAACAAGGAAACAATAA
TTGAGCTCACACCTGCAAGGTCATAGCAAAAAAAAAGAGGACAAAAATGA
AAACGGCGGAAAAGGACAACGTGAGGGGAAAATACGCCGCTACCTCGAAT
CCGCGTGTGAAACTCAAGCAAGATGGTCCATACTGAAGAATGAATAGGTC
CATATCGACCACTTGATCATGATCAGGGGTAGGTGGTGAAGGACCAAAGG
CGGATGCACCCACATGGCTCCGGTCGAGCTTGAATGCGCCGATCGCACTC
TTCCCCATGTAGTTGGCAAAGGGTCAAAGGCGGACACACGGTAGACTTTG
CGGGAACGGCGCTCTAAGAGCCGCACAGGTCTGGTTGAGCTGATTGGTGC
TCAATCCATCCTCTGCTGTAGCATATTTGTACCGATTCGAACATTACATG
TTCAACTATGTGGTTGCGTGAGACTTCCCAGTTCCACACGTCACGCGATT
CGCACACCGTCGAATTCTGCGTGGTCACCACACCAGAAAAACAAACGGTT
ACTCTTCAGGCCAGCGCCTCATCGTTCCGAATTTTACAAATTCACCGAGG
TAGGCGACGCACGGTATTTATGTAATGACATGCATGACACCAAACACGCT
TCGCGCAGGGAAAAAAACACATCCAGAAACTCATACGGTTTCTCAAAGAC
AACAAAAGGTGACGGAAGAGAACGAAGACTACTTGGTACTGACGAATGCG
GCAAAAACACCTCAAGAACCCGTGCGCAGTCCAAATCATACCTCGGGGAA
CCAACGACGAACAAGCTAAAGCAAAAGCTCCAAGCAAGACGCGCCACCTC
GCCAACACTGAGCTCACGCTCACACTCCTCTCACACCCGAACTAATTATT
TCGGGCTGCCTCCCGAAAGTCCCGTATCTAACCAACACTATTCTATGTAC
CAACGACACGTAAGCAAACGTGCGTAGCATATAATTTCTACCGATGAACA
GACGGACACAGGTCCCCCTTCCCCCAAGGCTTATGGTGTTGAAGCGGAGC
CGTGCCTGGACGGAGCGGAGTACCACTCGCCGACTGCGCACGCACCACAT
GAAACGTTGGCAGTATCGATCAACGTACCTCACGATGGAGCGTACGGGGG
TGATTTTTTTTTTTTTTCTTCTCCCATCATTGGACTTTATCGTTTGCCCC
TCTGGCCCCCAT

protein sequence of EsuBft505_5a-0001

>EsuBft505_5 ID=EsuBft505_5|Name=EsuBft505_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=151bp
MWLDFSTANYFIEALSEDAQTPGILECRLPPRSTNQPQQAYLVSMSRLPR
IVWEAKWANKTRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKI
YVACAEREQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDVGTKLKGX
X

mRNA from alignment at Scaffold_630:80829..83088+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft505_5a-0001 ID=EsuBft505_5a-0001|Name=EsuBft505_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2260bp|location=Sequence derived from alignment at Scaffold_630:80829..83088+ (Ectocarpus subulatus male Bft15b)
ATGTGGCTCGATTTCTCAACTGCCAACTACTTCATTGAGGCGCTTTCCGA
AGATGCGCAGACGCCGGGCATCCTCGAATGCCGCCTCCCCCCTCGAAGCA
CCAACCAGCCCCAACAGGCATATCTTGTCTCGATGTCGAGGTTGCCGAGA
ATTGTATGGGAGGCGAAGTGGGCAAACAAAACGAGGGGTAGACAACCCAC
GGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACG
AGGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATA
TATGTTGCTTGTGCCGAGAGAGAACAGAATCTAAGGAAAGAATCCAAGGA
TAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCA
AGGATTACCTACATGGACCAATGGATGTAGGAACAAAGCTTAAGGTCAAA
TTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGAC
GAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAA
GACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGA
AGTGTACGTGACTGAGCTGGGAAAAATAGATGGAACGTACAGGGAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCGCTCCCC
ATGGTTACAGGGTCATCTCCAGGGCAATCTGGGCGATTTTGGACCATTTT
CGACTACACCTACCGCTTTCAGCGCAAAACAGGCATCATTATTCCTCAGT
TTTTTTGTTCGTGGTTGATTAGTGTTTCACCCCAACTGGACAACACTTCC
TTCAAAAAATCCAACCTTGTTCGCTGTTCTACAACAAGGAAACAATAATT
GAGCTCACACCTGCAAGGTCATAGCAAAAAAAAAGAGGACAAAAATGAAA
ACGGCGGAAAAGGACAACGTGAGGGGAAAATACGCCGCTACCTCGAATCC
GCGTGTGAAACTCAAGCAAGATGGTCCATACTGAAGAATGAATAGGTCCA
TATCGACCACTTGATCATGATCAGGGGTAGGTGGTGAAGGACCAAAGGCG
GATGCACCCACATGGCTCCGGTCGAGCTTGAATGCGCCGATCGCACTCTT
CCCCATGTAGTTGGCAAAGGGTCAAAGGCGGACACACGGTAGACTTTGCG
GGAACGGCGCTCTAAGAGCCGCACAGGTCTGGTTGAGCTGATTGGTGCTC
AATCCATCCTCTGCTGTAGCATATTTGTACCGATTCGAACATTACATGTT
CAACTATGTGGTTGCGTGAGACTTCCCAGTTCCACACGTCACGCGATTCG
CACACCGTCGAATTCTGCGTGGTCACCACACCAGAAAAACAAACGGTTAC
TCTTCAGGCCAGCGCCTCATCGTTCCGAATTTTACAAATTCACCGAGGTA
GGCGACGCACGGTATTTATGTAATGACATGCATGACACCAAACACGCTTC
GCGCAGGGAAAAAAACACATCCAGAAACTCATACGGTTTCTCAAAGACAA
CAAAAGGTGACGGAAGAGAACGAAGACTACTTGGTACTGACGAATGCGGC
AAAAACACCTCAAGAACCCGTGCGCAGTCCAAATCATACCTCGGGGAACC
AACGACGAACAAGCTAAAGCAAAAGCTCCAAGCAAGACGCGCCACCTCGC
CAACACTGAGCTCACGCTCACACTCCTCTCACACCCGAACTAATTATTTC
GGGCTGCCTCCCGAAAGTCCCGTATCTAACCAACACTATTCTATGTACCA
ACGACACGTAAGCAAACGTGCGTAGCATATAATTTCTACCGATGAACAGA
CGGACACAGGTCCCCCTTCCCCCAAGGCTTATGGTGTTGAAGCGGAGCCG
TGCCTGGACGGAGCGGAGTACCACTCGCCGACTGCGCACGCACCACATGA
AACGTTGGCAGTATCGATCAACGTACCTCACGATGGAGCGTACGGGGGTG
ATTTTTTTTTTTTTTCTTCTCCCATCATTGGACTTTATCGTTTGCCCCTC
TGGCCCCCAT

Coding sequence (CDS) from alignment at Scaffold_630:80829..83088+

>EsuBft505_5a-0001 ID=EsuBft505_5a-0001|Name=EsuBft505_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_630:80829..83088+ (Ectocarpus subulatus male Bft15b)
ATGTGGCTCGATTTCTCAACTGCCAACTACTTCATTGAGGCGCTTTCCGA
AGATGCGCAGACGCCGGGCATCCTCGAATGCCGCCTCCCCCCTCGAAGCA
CCAACCAGCCCCAACAGGCATATCTTGTCTCGATGTCGAGGTTGCCGAGA
ATTGTATGGGAGGCGAAGTGGGCAAACAAAACGAGGGGTAGACAACCCAC
GGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACG
AGGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATA
TATGTTGCTTGTGCCGAGAGAGAACAGAATCTAAGGAAAGAATCCAAGGA
TAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCA
AGGATTACCTACATGGACCAATGGATGTAGGAACAAAGCTTAAGGGAGNN
NNN