EsuBft505_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft505_3a-0001
Unique NameEsuBft505_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:90216..94152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LR73
ProteomeIdEsuBft505_3
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsIPR001792
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsG3DSA
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteacylphosphatase os:aeropyrum pernix (strain atcc 700893 dsm 11879 jcm 9820 nbrc 100138 k1) gn:a [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1532
Hectar predicted targeting categorysignal peptide
Evalue5.45e-124
EggNOG OGs2C3YV@1|root,2SES2@2759|Eukaryota
Ec32 ortholog descriptionAcylphosphatase-like domain
Ec32 orthologEc-06_004110.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionAcylphosphatase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft505_3aEsuBft505_3aEctocarpus subulatus male Bft15bgeneScaffold_630 90216..94152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft505_3a-0001EsuBft505_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 90367..93365 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft505_3a-0001-exonagat-exon-55788Ectocarpus subulatus male Bft15bexonScaffold_630 90216..90511 +
EsuBft505_3a-0001-exonagat-exon-55790Ectocarpus subulatus male Bft15bexonScaffold_630 91599..91762 +
EsuBft505_3a-0001-exonagat-exon-55791Ectocarpus subulatus male Bft15bexonScaffold_630 92149..92311 +
EsuBft505_3a-0001-exonagat-exon-55789Ectocarpus subulatus male Bft15bexonScaffold_630 92847..92917 +
EsuBft505_3a-0001-exonEsuBft505_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 93315..94152 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft505_3a-0001-exonagat-five_prime_utr-11026Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 90216..90366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft505_3a-0001-cdsEsuBft505_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 90367..90511 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft505_3a-0001-exonagat-three_prime_utr-17357Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 93366..94152 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft505_3a-0001 ID=EsuBft505_3a-0001|Name=EsuBft505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1532bp|location=Sequence derived from alignment at Scaffold_630:90216..94152+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCAGACAGAGTGTTGAGGCCAGGCCGGCACGAACAGAGTGTGACGAGTCG
CGCGTGAGAGCTCCCTTCGATTTTCTACCATCGAATCGAGCTACGACGTC
AACGCTAGCATCTGTGGCGAATCCCGCAGCGTATCGTCGTCCATATCCAC
CATGAGGCTCTCCCTGCTGCTGTCGTTCATTGCGACCGCCTCGTCCTTGC
GTCGGTCCTCCGGGTTCATGTTTGCCGCTGCTGGTGCCAGGAGTGGGTCG
TGTAGCAAATGGAGTGGCGTTCCGTGCACCATGCACGCCTGCAAAGGCCC
GTCTCGAACAGCGATACCAGCAAGTGCCAGCAGGGGTTGGTGCTATGCGT
CAAGCAGCTTGCGGATGGGTGAAACAGCAGGAGAGGAGGGGTTGGCGGCG
GATGGCGGAAGCAGCGATGGAACAGCTCTCGCCGAGGCTCGAATATTGGT
CCAGGGGCAGTCTACCGGCGGATACTTCCGAGCGCACGCCAGGAACGAGG
CCCACTTCAACCGCAAGCTGTGCGGGGCATTGAAAGAGCTGGGTCAAGGG
CAGACGGAGATCATCGTCGAAGGGAAGACTAGCGCCATCCGGAGCTTCCT
GCGGTGGTGTAAGAGGGGGCCCGGCTTGTCTCAACAGATTCAGGAAGTGA
CGGTGGACTGGGCCGAGTACACGGGAATATTCGACGGCTTCGAGGTGTTC
CCCGACGAGACTTCCCAAAACACGGCAGCCGCGGGGGCCCCGTGATGCGG
ACGCAGAAGGTTTGCCTCCCCGTGGCCCCTCATCGCCGTTGACAGTTCAG
GAAAATCAGAGACGGGGAATGAGAAGCTCGGAAATAGGGCGCCAGCGCCT
GGTCCAGAGAGAAGGATTGGGCGTTACATCATCCTTATGTCTTCAGCGGT
CTGGTTTGGTACCGAACACCATTAAGGCCACATCGATAATATAGTTTACC
GTTTCTTCGGACCCCCTGGCGAATCATTAGGCAACAGATGAGAACAGTTT
TCGTCCATCGCTTGATTTCAACTGAAAGACATGGTCCACAACAATAGCTC
TCGGGCCGTAGGGGGTACTACGCATCGAGGCCTTTTCGTTTTAGCATGCG
GAAGAAGGCGTAGCAACCACGTCGAGCGCTGAATGCTATAATTTACGCGC
GCACGCCGCGATGAGGGAAAAACAGTGCCAGTCGGCGTGCCCTTTGTGTT
TCCCACGCAGCAGCAGTTAGTTACGTCAGCGGGTCGGCCTTCCTCCTGCC
GGGTGGGAATAGCTTGTTTGTCCGATTTGTGCTCTCGTGGAATCGGAAGC
GAACCTTTTCCTGGCGGACAGAAAGGGTACACCAGACACAGTCGCGGCAG
GACTACAATTACATCAGCGTAATCTGATTTTTTTCTTTCCCAAGACTGCC
TTCAGCCCGAGACGGGTGGTGTTCTCGACTGGCGGCCACACCACCTTGTG
CAGTAAACGGGGAGAGTGGTTTTGCCGTGGGGGTGGTCACATGTGCCTGC
CAGTGGTATTGGTATGCTTTAAATAATACCAT
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protein sequence of EsuBft505_3a-0001

>EsuBft505_3 ID=EsuBft505_3|Name=EsuBft505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=197bp
MRLSLLLSFIATASSLRRSSGFMFAAAGARSGSCSKWSGVPCTMHACKGP
SRTAIPASASRGWCYASSSLRMGETAGEEGLAADGGSSDGTALAEARILV
QGQSTGGYFRAHARNEAHFNRKLCGALKELGQGQTEIIVEGKTSAIRSFL
RWCKRGPGLSQQIQEVTVDWAEYTGIFDGFEVFPDETSQNTAAAGAP
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mRNA from alignment at Scaffold_630:90216..94152+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft505_3a-0001 ID=EsuBft505_3a-0001|Name=EsuBft505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3937bp|location=Sequence derived from alignment at Scaffold_630:90216..94152+ (Ectocarpus subulatus male Bft15b)
CCAGACAGAGTGTTGAGGCCAGGCCGGCACGAACAGAGTGTGACGAGTCG
CGCGTGAGAGCTCCCTTCGATTTTCTACCATCGAATCGAGCTACGACGTC
AACGCTAGCATCTGTGGCGAATCCCGCAGCGTATCGTCGTCCATATCCAC
CATGAGGCTCTCCCTGCTGCTGTCGTTCATTGCGACCGCCTCGTCCTTGC
GTCGGTCCTCCGGGTTCATGTTTGCCGCTGCTGGTGCCAGGAGTGGGTCG
TGTAGCAAATGGAGTGGCGTTCCGTGCACCATGCACGCCTGCAAAGGTGC
GTGTTCCTTCTGCCGCGTTCATGGTGCGTGGTTGCGAACGAGAGTGTGAG
GTCTTGGTATGCCGGCCAAATGGTAGTCTCGGCCGTTGCATGTGGCACGT
GTACGCCGCACACGGTCGGCTGAGGATTTCCCCCTAGCGCCTGCTGGAGC
TTTTGGCGCGTGCTTTGTGTTTAAGTGGTGGGGTGCCTCGCCATTGCACA
AGAGGGACACGGATACTTGCAGTCATGGTGGGCATTTGTCAATATGCTGC
GGAAGGAGAGCCAACGTTGCACACACGATTTGCATTTGCACAAGGATTGA
GATGGGCGGTGTTTCGCTTGCGCGCCAACCTACACATCAAACATCAAACG
TGCGGTGGCTGCGTGTTTGTATGATGTCGTTGCTGTTGGGGGTCTCATCT
GGTTGTGTTGCTCGACTCTCAAAAGTTGCTGCTCAAAAATGGATACACCG
CTGGAAAGCCTGACCGAGCTGCACCCCACTAGCTGCCCAATGTATGCATT
TCGGTTGATACACAAACCCCGTTTTTCCTGTCTCAAATCGGGGACAGCAC
GAACGCACACGGCGGTGGTGGTCATTAGAATAATCACTGCGAGGAGACTG
GTCAGAATAGTTTTTGCTAGGAACTTAACAATAATGGTTGACAGAGCTTC
GCCTAACAGGCGGTCCAAACGCCGGAGCCCCCGGCCGGGACCGTCAAGGG
ATCGTGGGGTCCTCCCATTCCCCATTAGACTATGTATCTTCCTAACCTAA
CCTCTCTCGCTCTTGGTGCCAAATACTCGAGGCTGGTCGGCAGAACCCCG
AGATACACTCTGATCCAATGCACTAGAGATGTCAGATCTACAGCCGAACG
GCTTCGACTTGAAAGCATGATCGCTCATGGTGCCGCCCCCGCCCCCTCTC
TCTCAGACCTTGAGAACGACTCCGTTCCTTCCAGCTTATTTCGCCATGTG
TATACCCAAAGTTCTTTACGTGTCATGGGCACAGGACCCCCTTTTGTTTT
TGCCTACCAATAGGTCCTGACGAGCGCCGCGATTTTTTTCTGAAAGGCCT
CCCGATTTGGCGATGATATCTCCTCAAACACAGGCCCGTCTCGAACAGCG
ATACCAGCAAGTGCCAGCAGGGGTTGGTGCTATGCGTCAAGCAGCTTGCG
GATGGGTGAAACAGCAGGAGAGGAGGGGTTGGCGGCGGATGGCGGAAGCA
GCGATGGAACAGCTCTCGCCGAGGCTCGAATATTGGTCCAGGGGCAGGTG
CGTCATGTGCCAGGGGGTGTTTTACCTAATTACTTATTTTTTCTTTCTGA
TTTGGTGCTCTATTGTCTAGTAAAACGAGTCGGTCGTGAACAACTTAGAT
GTGACATCAGCAAGGTTATTGGATATTGGTAGATGCTACTAATCAAAAGT
GCCTTTGCCATCGCTGTATTCTGCATGCAGAGAGAACGTAAACCCACACC
CTCGCACCTTGTCGGAGGCTTTTATGGACTTTGAGTCTGTGAGTGTTGTA
TCTCCAGCCCAGGTCATCCCCCCGTTCAAGCCGCTGCACGCTTCTGCCCC
CCATCCCCGCCCCGTTTCCATTCGCACCTTGCGTCCCCGCTTTTGCCTAC
GCAAACACCCGCTTGGATTACGGAATATGGCAGTCTACCGGCGGATACTT
CCGAGCGCACGCCAGGAACGAGGCCCACTTCAACCGCAAGCTGTGCGGGG
CATTGAAAGAGCTGGGTCAAGGGCAGACGGAGATCATCGTCGAAGGGAAG
ACTAGCGCCATCCGGAGCTTCCTGCGGTGGTGTAAGAGGGGGCCCGGTAA
GTTTGGCGTGGGTGAAATCGCTGAGTGTATGCGTTTCGGAGACCTTGCGG
GATGATAAGGAATCCTTTCCTGATTCACCGTGGTCCCGGCGAGTCGACCG
CTGTACCAGAGGCCATCGCGCGGACGGGAAGACGTGGTAGGCGGACAAAC
GGCTGCGGGAATCGGGAATAGGCAAACAGCCGAAATGAACGGAGGACGAA
AAGAAAGCCTCTGCTGTTTTGTCCGTTGAGAATCTTTTCCTCAGACGCAT
TTTTTGCCTAGCTCCAGCGCCCTCTCATGGTGCGTGTGTTTCTCTCCGTC
CCTCCGTGGGCTTTTGTCGACATCACGGCATCCGTATGCATTCATGGGGT
GACCGTACTATCAGATGGGAAAACGCACGAGGACGGAGAGACGGACCGGC
GAGCCTCCTTTGCTCCGGCATATTCCTGACTCCCCGTCTGTTTTCTTGTC
ATGAGCGTGCTTTCGGCCATGCCCGCCGGCTTCCTCTGATGGCTCCCCCG
TTTGACCCTTGATTTTCATCGTCGCGCCCAGGCTTGTCTCAACAGATTCA
GGAAGTGACGGTGGACTGGGCCGAGTACACGGGAATATTCGACGGCTTCG
AGGTGTGTGTCCAAACGTGTTCATTTTGGTATTGTCGGCTGTGGGGTGAG
GAGTGTACAACTCCAAGCATCGCGAGTCGACCGGTGTACCGGAGGCCACA
GCGCGGACGGGAAGACGTGGTAGGCGGACAAAGGGCTGTGGGAATCGGGC
TTAGGCAAACGGCCGAAATGAGCGGAGAACAGGAAGAAAGCCTCCCTCTC
CAGACGCATTTTTCGTCCTATTCAGCGCCCGCTCATGGTGCTTTTGCATT
TCTCCCGGCAGCCAACCCCGTCCGCTGTAGTTGCATCGAACACGTGCCGT
GGGCCTGGTGCAGTCAACCTGACTCTGTTGCAGGATTAAACATGTTTGCG
TACATGTGTATCCAATGAGAATTGCTCGTCTGCTTTCTCGAACGCGCAGG
TGTTCCCCGACGAGACTTCCCAAAACACGGCAGCCGCGGGGGCCCCGTGA
TGCGGACGCAGAAGGTTTGCCTCCCCGTGGCCCCTCATCGCCGTTGACAG
TTCAGGAAAATCAGAGACGGGGAATGAGAAGCTCGGAAATAGGGCGCCAG
CGCCTGGTCCAGAGAGAAGGATTGGGCGTTACATCATCCTTATGTCTTCA
GCGGTCTGGTTTGGTACCGAACACCATTAAGGCCACATCGATAATATAGT
TTACCGTTTCTTCGGACCCCCTGGCGAATCATTAGGCAACAGATGAGAAC
AGTTTTCGTCCATCGCTTGATTTCAACTGAAAGACATGGTCCACAACAAT
AGCTCTCGGGCCGTAGGGGGTACTACGCATCGAGGCCTTTTCGTTTTAGC
ATGCGGAAGAAGGCGTAGCAACCACGTCGAGCGCTGAATGCTATAATTTA
CGCGCGCACGCCGCGATGAGGGAAAAACAGTGCCAGTCGGCGTGCCCTTT
GTGTTTCCCACGCAGCAGCAGTTAGTTACGTCAGCGGGTCGGCCTTCCTC
CTGCCGGGTGGGAATAGCTTGTTTGTCCGATTTGTGCTCTCGTGGAATCG
GAAGCGAACCTTTTCCTGGCGGACAGAAAGGGTACACCAGACACAGTCGC
GGCAGGACTACAATTACATCAGCGTAATCTGATTTTTTTCTTTCCCAAGA
CTGCCTTCAGCCCGAGACGGGTGGTGTTCTCGACTGGCGGCCACACCACC
TTGTGCAGTAAACGGGGAGAGTGGTTTTGCCGTGGGGGTGGTCACATGTG
CCTGCCAGTGGTATTGGTATGCTTTAAATAATACCAT
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Coding sequence (CDS) from alignment at Scaffold_630:90216..94152+

>EsuBft505_3a-0001 ID=EsuBft505_3a-0001|Name=EsuBft505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=594bp|location=Sequence derived from alignment at Scaffold_630:90216..94152+ (Ectocarpus subulatus male Bft15b)
ATGAGGCTCTCCCTGCTGCTGTCGTTCATTGCGACCGCCTCGTCCTTGCG
TCGGTCCTCCGGGTTCATGTTTGCCGCTGCTGGTGCCAGGAGTGGGTCGT
GTAGCAAATGGAGTGGCGTTCCGTGCACCATGCACGCCTGCAAAGGCCCG
TCTCGAACAGCGATACCAGCAAGTGCCAGCAGGGGTTGGTGCTATGCGTC
AAGCAGCTTGCGGATGGGTGAAACAGCAGGAGAGGAGGGGTTGGCGGCGG
ATGGCGGAAGCAGCGATGGAACAGCTCTCGCCGAGGCTCGAATATTGGTC
CAGGGGCAGTCTACCGGCGGATACTTCCGAGCGCACGCCAGGAACGAGGC
CCACTTCAACCGCAAGCTGTGCGGGGCATTGAAAGAGCTGGGTCAAGGGC
AGACGGAGATCATCGTCGAAGGGAAGACTAGCGCCATCCGGAGCTTCCTG
CGGTGGTGTAAGAGGGGGCCCGGCTTGTCTCAACAGATTCAGGAAGTGAC
GGTGGACTGGGCCGAGTACACGGGAATATTCGACGGCTTCGAGGTGTTCC
CCGACGAGACTTCCCAAAACACGGCAGCCGCGGGGGCCCCGTGA
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