EsuBft505_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft505_10a-0001
Unique Name	EsuBft505_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:45521..47811 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft505_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	127
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft505_10a	EsuBft505_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 45521..47811 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_10a-0001	EsuBft505_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 47527..47811 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_10a-0001-exon	agat-exon-55813	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 45521..46285 -
EsuBft505_10a-0001-exon	agat-exon-55812	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 46802..46833 -
EsuBft505_10a-0001-exon	EsuBft505_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 47337..47811 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_10a-0001-exon	agat-three_prime_utr-17350	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 45521..46285 -
EsuBft505_10a-0001-exon	agat-three_prime_utr-17351	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 46802..46833 -
EsuBft505_10a-0001-exon	agat-three_prime_utr-17352	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 47337..47526 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft505_10a-0001-cds	EsuBft505_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 47527..47811 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:45521..47811-
coding sequence from alignment at Scaffold_630:45521..47811-

spliced messenger RNA

>EsuBft505_10a-0001 ID=EsuBft505_10a-0001|Name=EsuBft505_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1272bp|location=Sequence derived from alignment at Scaffold_630:45521..47811- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATTGGGTTGGGTTCGGGGATGATGAGCATACATCTTACCCGTC
GGATCCATCTCGATCCGCATCCACCGTCCACCACTCTGTTCGTGAGGTGG
ATTATGCCATCCTTACGAAGGCTACTGTGGTGATACTCATGTGTGGTTTT
GAGCTCGATGCAATTGCGCAAGAAGTGGCTGTTACTCGTTCTTGGATCTT
CGGGGTATCTCCGATCATATCTTTGACAGGTTGTCACGTGTTCCGCTGTC
GCGTGTTCCGAGTTCCGAATGCGTCTTTACTATGAGGAATTTCTTGCGAC
TGTTGTACGAGTGCCTCGATGTTTGTGATGCATCCTGGTTCTCACTCTCT
TTCGTGGGTTGTGTCCACGAAGGCAACCAATAAAACGTCTTAACCATCTC
TCCACGTTTGTCAACCGGGTCAGCCGTGCTAATCCAGCAGCACTAGGCTT
GGGGCCGATCAACACTCTAGAGCCGGTGTAGATGATGACGGTATGGTAAG
GCAGGGATGCCCGGGGCACCGCCCGCCGGGAGTACGACCGCGGCGAGCGG
CGGAGGAGAGTCATCGGGAGGGGCGCACACCCTTCCGGGCGCTGGGTTTT
CGACGGAGCACGCGCCAAGTACCGGACGGGGACTCGAGGGAGCGAGAGGA
CTGCTAGGCCCAGCGCCACGAGCGCACACGCCATCCGAGGGAGGTACCTC
GCGAGAAGGCGCCCACAGCGAGCAGGCCGCATGCTATGCCACATACTCAC
ACGCCCGGATCCCGCGCCTGAAACAACTGAGCTTTGATGGCCATGAGAAG
AACTGACTCATGTTCAAAAACGAGTTAACTACGCAGGTCCAAACATGCGG
AACGGATCGTGCCTTGAATGATAGCAGGGACATTGTGGTACAAGGTGTAG
ATGATGACGGTATGGTAAGGCAGGGAGTGAGGAGAGAGGAGATTGCCGTG
TACCGAGATCTGTGGGTATTGCTGACCGAAGCGATCTCAGAATATGCGAC
CAAGATTATGGTGTTTGGTTGCAAAGGACCCTCAGCAGCGTGGCGTGCGT
TGGAAGAGACATTTTCTCCGTTGACAGGCGGCGAGAAAATATCACTGATG
GCAAAGTTTTTCGACGCCCAATAGGGGAAGAACCAGGATCCACGAGTGTT
CTATCAGGAGTTCAAGTCCATGGTGACCAGCCTAGAGTTGGCATTTGAAC
AACCCATCCCAAAGATGCTCGTTTATGCGCGATTCCTCGACGCGCTTTCA
CCGGAATTCGAAGTTCAAAAGC

protein sequence of EsuBft505_10a-0001

>EsuBft505_10 ID=EsuBft505_10|Name=EsuBft505_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MKDWVGFGDDEHTSYPSDPSRSASTVHHSVREVDYAILTKATVVILMCGF
ELDAIAQEVAVTRSWIFGVSPIISLTGCHVFRCRVFRVPNASLL

mRNA from alignment at Scaffold_630:45521..47811-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft505_10a-0001 ID=EsuBft505_10a-0001|Name=EsuBft505_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2291bp|location=Sequence derived from alignment at Scaffold_630:45521..47811- (Ectocarpus subulatus male Bft15b)
ATGAAAGATTGGGTTGGGTTCGGGGATGATGAGCATACATCTTACCCGTC
GGATCCATCTCGATCCGCATCCACCGTCCACCACTCTGTTCGTGAGGTGG
ATTATGCCATCCTTACGAAGGCTACTGTGGTGATACTCATGTGTGGTTTT
GAGCTCGATGCAATTGCGCAAGAAGTGGCTGTTACTCGTTCTTGGATCTT
CGGGGTATCTCCGATCATATCTTTGACAGGTTGTCACGTGTTCCGCTGTC
GCGTGTTCCGAGTTCCGAATGCGTCTTTACTATGAGGAATTTCTTGCGAC
TGTTGTACGAGTGCCTCGATGTTTGTGATGCATCCTGGTTCTCACTCTCT
TTCGTGGGTTGTGTCCACGAAGGCAACCAATAAAACGTCTTAACCATCTC
TCCACGTTTGTCAACCGGGTCAGCCGTGCTAATCCAGCAGCACTAGGCTT
GGGGCCGATCAACACTCTAGAGCCGGTCCGACCCATAAGGAGCTACGGAC
AGCCATCGATGACGCCGTCGGCGACGCCAGCACCAGACTGGAAAGGATGG
TTGAAGAGAAATTGGAGGGTATCATGGACTCCTTGTCCCGATTAGTGCCC
GGGGCACCGCCTGCCGGGAGTACGACCGCGGCGAGCGGCGGAGGAGAGTC
ATCGGGAGGGGCGCACACCCTTCCGGGCGCTGGGTTTTCGACGGAGCACG
CGCCAAGTACCAGGCGGGGACCCGAGGGAGCGAGAGGACTGCTAGGCCCA
GCGCCACGAGAGCACACGCCATCCGAGGGAGGCACCTCGCGAGAAGGCGC
CCACAGCGAGCAGGCCGATTGGTATGCCACTCACACGCCCGGATCCCGCG
CCTGAATCAACTGAGCTTTGATGGCCATGAGAAGAACTGACTCATGTTCA
AAAACGAGTTAACTACGCAGGTCCAAACATGCGGAACGGATCGTGCCTTG
AATGATAGCAGGGACATTGTGGTACAAGGTGTAGATGATGACGGTATGGT
AAGGCAGGGAGTGAGGAGAGAGGAGATTGCCGTGTACCGAGATCTGTGGG
TATTGCTGACCGAAGCGATCTCAGAATGTGCGACCAAGATTATGGTGTTT
GGTTGCAAAGGACCCTCAGCAGCGTGGCGTGCGTTGGAAGAGACATTTTC
TCCGTTGACAGGCGGCGAGAAAATATCACTGATGGCAAANTCTTCAACCA
TCCTTTCCAGTCTGGTGCTGGCGTCGCCGACGGCGTCATCGATGGCTGTC
CGTAGCTCATGGGTCGGACCGGCCCCGCCTCCGCCAGAGTTACCCGATTC
TTGCGAAGACATGTGTGTCCTAGACTATGGCGTTAAAAGCCCAAAACTCT
AGAGTGTCGGACACACATGTCTTCGCAATTATCGGGTAACTCTGGCGGAG
GCGGGGCCGGTCCGACCCATGAGCTACGGACAGCCATCGATGACGCCGTC
GGCGACGCCAGCACCAGACTGGAAAGGATGGTTGAAGAGAAATTGGAGGG
TATCATGGACTCCTTGTCCCGATTAGTGCCCGGGGCACCGCCCGCCGGGA
GTACGACCGCGGCGAGCGGCGGAGGAGAGTCATCGGGAGGGGCGCACACC
CTTCCGGGCGCTGGGTTTTCGACGGAGCACGCGCCAAGTACCGGACGGGG
ACTCGAGGGAGCGAGAGGACTGCTAGGCCCAGCGCCACGAGCGCACACGC
CATCCGAGGGAGGTACCTCGCGAGAAGGCGCCCACAGCGAGCAGGCCGCA
TGCTATGCCACATACTCACACGCCCGGATCCCGCGCCTGAAACAACTGAG
CTTTGATGGCCATGAGAAGAACTGACTCATGTTCAAAAACGAGTTAACTA
CGCAGGTCCAAACATGCGGAACGGATCGTGCCTTGAATGATAGCAGGGAC
ATTGTGGTACAAGGTGTAGATGATGACGGTATGGTAAGGCAGGGAGTGAG
GAGAGAGGAGATTGCCGTGTACCGAGATCTGTGGGTATTGCTGACCGAAG
CGATCTCAGAATATGCGACCAAGATTATGGTGTTTGGTTGCAAAGGACCC
TCAGCAGCGTGGCGTGCGTTGGAAGAGACATTTTCTCCGTTGACAGGCGG
CGAGAAAATATCACTGATGGCAAAGTTTTTCGACGCCCAATAGGGGAAGA
ACCAGGATCCACGAGTGTTCTATCAGGAGTTCAAGTCCATGGTGACCAGC
CTAGAGTTGGCATTTGAACAACCCATCCCAAAGATGCTCGTTTATGCGCG
ATTCCTCGACGCGCTTTCACCGGAATTCGAAGTTCAAAAGC

Coding sequence (CDS) from alignment at Scaffold_630:45521..47811-

>EsuBft505_10a-0001 ID=EsuBft505_10a-0001|Name=EsuBft505_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_630:45521..47811- (Ectocarpus subulatus male Bft15b)
ATGAAAGATTGGGTTGGGTTCGGGGATGATGAGCATACATCTTACCCGTC
GGATCCATCTCGATCCGCATCCACCGTCCACCACTCTGTTCGTGAGGTGG
ATTATGCCATCCTTACGAAGGCTACTGTGGTGATACTCATGTGTGGTTTT
GAGCTCGATGCAATTGCGCAAGAAGTGGCTGTTACTCGTTCTTGGATCTT
CGGGGTATCTCCGATCATATCTTTGACAGGTTGTCACGTGTTCCGCTGTC
GCGTGTTCCGAGTTCCGAATGCGTCTTTACTATGA