EsuBft5020_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft5020_2a-0001
Unique Name	EsuBft5020_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_627	contig	Scaffold_627:312540..313735 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	3750.XP_008370919.1
ProteomeId	EsuBft5020_2
Protein domains	Coil
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1196
Evalue	1.57e-28
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3894V@33090\|Viridiplantae,3GY0Z@35493\|Streptophyta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	T

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0097159
GO	1901363
GO	0044424
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft5020_2a	EsuBft5020_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_627 312540..313735 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5020_2a-0001-exon	EsuBft5020_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 312540..313735 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5020_2a-0001-cds	EsuBft5020_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_627 312540..313316 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5020_2a-0001-exon	agat-three_prime_utr-17287	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_627 313317..313735 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5020_2a-0001	EsuBft5020_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_627 312540..313316 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_627:312540..313735+
coding sequence from alignment at Scaffold_627:312540..313735+

spliced messenger RNA

>EsuBft5020_2a-0001 ID=EsuBft5020_2a-0001|Name=EsuBft5020_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1196bp|location=Sequence derived from alignment at Scaffold_627:312540..313735+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGACGAAGTCGTGGTGATGATTATCGTGATTTACGTGGATGACAT
TTTGGTGGCTGGGTCTGACGAGGATTTCGAGGAGTTCCTTGCTTCTCTCA
ACAAGAAATTTCCCACCAAAAACCTTGGAGAGTGTCAATGGTTTGATGGG
TGTGCCATCGAGAGAGATGTAGAGGCTGGGACTCTTAGAATCTCCCAAAC
CGCGTATATCGACAGCATGGTTGAACGCTTCGATGTGAAATCAACTTCCC
GCATCCCCGCTACCCCTGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAG
GAAGGAGGGGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGT
GTCGACTTTTTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGC
GCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCATACAGAAGATC
CTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCACCTACCAACGGGG
ATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCTACGCCGACACGG
AGGATAGGCGTTCGGTGTCAGGGTTAGCGACGACGGTCGGAGGTACCGTA
GTCAGCCATGGTAGCAAGACGAAGATTATCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAACGGAGCAACACGCGGACCTCCTCACCAAGGCCCTTAGCAGGG
CCAGTCTGCAGTATCACCGGCGCAAGCTGATGAATTTGCCAGAGTAGCTG
TAGCAGTCTCTAGCACTTGGGAGAGGCCATGTTTTCCATGCGGGAAAAGG
CGAATAACTGTTGCGGTCTGTGTACCAATGGCAGGAGTAGGGAGCGTTGG
GAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTTTTGTCTTCGCCTT
GGCCTTTCTAATAAGTGCGGCCGTTGTAATCCGCTGTGATAGCGACGGTT
TTTGTGGTGGTAGGGTTTCTTTTTTTCGAAGGGTTTTGCCCGGACG

protein sequence of EsuBft5020_2a-0001

>EsuBft5020_2 ID=EsuBft5020_2|Name=EsuBft5020_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=259bp
MVDEVVVMIIVIYVDDILVAGSDEDFEEFLASLNKKFPTKNLGECQWFDG
CAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE
EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKI
LGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTV
VSHGSKTKIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXX

mRNA from alignment at Scaffold_627:312540..313735+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft5020_2a-0001 ID=EsuBft5020_2a-0001|Name=EsuBft5020_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1196bp|location=Sequence derived from alignment at Scaffold_627:312540..313735+ (Ectocarpus subulatus male Bft15b)
ATGGTAGACGAAGTCGTGGTGATGATTATCGTGATTTACGTGGATGACAT
TTTGGTGGCTGGGTCTGACGAGGATTTCGAGGAGTTCCTTGCTTCTCTCA
ACAAGAAATTTCCCACCAAAAACCTTGGAGAGTGTCAATGGTTTGATGGG
TGTGCCATCGAGAGAGATGTAGAGGCTGGGACTCTTAGAATCTCCCAAAC
CGCGTATATCGACAGCATGGTTGAACGCTTCGATGTGAAATCAACTTCCC
GCATCCCCGCTACCCCTGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAG
GAAGGAGGGGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGT
GTCGACTTTTTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGC
GCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCATACAGAAGATC
CTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCACCTACCAACGGGG
ATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCTACGCCGACACGG
AGGATAGGCGTTCGGTGTCAGGGTTAGCGACGACGGTCGGAGGTACCGTA
GTCAGCCATGGTAGCAAGACGAAGATTATCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAACGGAGCAACACGCGGACCTCCTCACCAAGGCCCTTAGCAGGG
CCAGTCTGCAGTATCACCGGCGCAAGCTGATGAATTTGCCAGAGTAGCTG
TAGCAGTCTCTAGCACTTGGGAGAGGCCATGTTTTCCATGCGGGAAAAGG
CGAATAACTGTTGCGGTCTGTGTACCAATGGCAGGAGTAGGGAGCGTTGG
GAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTTTTGTCTTCGCCTT
GGCCTTTCTAATAAGTGCGGCCGTTGTAATCCGCTGTGATAGCGACGGTT
TTTGTGGTGGTAGGGTTTCTTTTTTTCGAAGGGTTTTGCCCGGACG

Coding sequence (CDS) from alignment at Scaffold_627:312540..313735+

>EsuBft5020_2a-0001 ID=EsuBft5020_2a-0001|Name=EsuBft5020_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=777bp|location=Sequence derived from alignment at Scaffold_627:312540..313735+ (Ectocarpus subulatus male Bft15b)
ATGGTAGACGAAGTCGTGGTGATGATTATCGTGATTTACGTGGATGACAT
TTTGGTGGCTGGGTCTGACGAGGATTTCGAGGAGTTCCTTGCTTCTCTCA
ACAAGAAATTTCCCACCAAAAACCTTGGAGAGTGTCAATGGTTTGATGGG
TGTGCCATCGAGAGAGATGTAGAGGCTGGGACTCTTAGAATCTCCCAAAC
CGCGTATATCGACAGCATGGTTGAACGCTTCGATGTGAAATCAACTTCCC
GCATCCCCGCTACCCCTGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAG
GAAGGAGGGGAGTGGCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGT
GTCGACTTTTTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGC
GCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCATACAGAAGATC
CTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCACCTACCAACGGGG
ATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCTACGCCGACACGG
AGGATAGGCGTTCGGTGTCAGGGTTAGCGACGACGGTCGGAGGTACCGTA
GTCAGCCATGGTAGCAAGACGAAGATTATCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN