EsuBft5009_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5009_2a-0001
Unique NameEsuBft5009_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1248638..1249205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft5009_2
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsIPR000477
Protein domainsPTHR19446
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSSF56672
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length568
Hectar predicted targeting categoryother localisation
Evalue1.72e-41
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5009_2aEsuBft5009_2aEctocarpus subulatus male Bft15bgeneScaffold_242 1248638..1249205 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5009_2a-0001-exonEsuBft5009_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1248638..1249205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5009_2a-0001-cdsEsuBft5009_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1248638..1249135 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5009_2a-0001-exonagat-three_prime_utr-17252Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1249136..1249205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5009_2a-0001EsuBft5009_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1248638..1249135 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5009_2a-0001 ID=EsuBft5009_2a-0001|Name=EsuBft5009_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=568bp|location=Sequence derived from alignment at Scaffold_242:1248638..1249205+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGAAAAGTCCGGCACTTTCTTTCCTCTGTGTGTGTGGATTTCGCT
ACTATCTCACGTGGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAA
GCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTT
CGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCA
GGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACT
TGAACAAGGCGTATGATTCGGTGGACCGACAGTTGCTATGGAAGGTGCTG
GCCAGGGCCGGGATTCCCGCGAAGCTGATCGAGGTCATCCGCCAATTCCA
CGATGGAATGCGGGGCCGGGTGCGCATGGACGGCGGAGAACTATCGAACT
GGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCGCGCTG
CTGATCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCTGATT
CAGCGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGA
AGACAGAAGCGGGGGGGC
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protein sequence of EsuBft5009_2a-0001

>EsuBft5009_2 ID=EsuBft5009_2|Name=EsuBft5009_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MREKSGTFFPLCVWISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGF
RPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDRQLLWKVL
ARAGIPAKLIEVIRQFHDGMRGRVRMDGGELSNWFFVTQGVRQGCVLSAL
LINIFFAEVLEVVVI
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mRNA from alignment at Scaffold_242:1248638..1249205+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5009_2a-0001 ID=EsuBft5009_2a-0001|Name=EsuBft5009_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=568bp|location=Sequence derived from alignment at Scaffold_242:1248638..1249205+ (Ectocarpus subulatus male Bft15b)
ATGCGAGAAAAGTCCGGCACTTTCTTTCCTCTGTGTGTGTGGATTTCGCT
ACTATCTCACGTGGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAA
GCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTT
CGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCA
GGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACT
TGAACAAGGCGTATGATTCGGTGGACCGACAGTTGCTATGGAAGGTGCTG
GCCAGGGCCGGGATTCCCGCGAAGCTGATCGAGGTCATCCGCCAATTCCA
CGATGGAATGCGGGGCCGGGTGCGCATGGACGGCGGAGAACTATCGAACT
GGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCGCGCTG
CTGATCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCTGATT
CAGCGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGA
AGACAGAAGCGGGGGGGC
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Coding sequence (CDS) from alignment at Scaffold_242:1248638..1249205+

>EsuBft5009_2a-0001 ID=EsuBft5009_2a-0001|Name=EsuBft5009_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_242:1248638..1249205+ (Ectocarpus subulatus male Bft15b)
ATGCGAGAAAAGTCCGGCACTTTCTTTCCTCTGTGTGTGTGGATTTCGCT
ACTATCTCACGTGGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAA
GCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTT
CGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCA
GGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACT
TGAACAAGGCGTATGATTCGGTGGACCGACAGTTGCTATGGAAGGTGCTG
GCCAGGGCCGGGATTCCCGCGAAGCTGATCGAGGTCATCCGCCAATTCCA
CGATGGAATGCGGGGCCGGGTGCGCATGGACGGCGGAGAACTATCGAACT
GGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCGCGCTG
CTGATCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCTGA
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