EsuBft499_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft499_2a-0001
Unique Name	EsuBft499_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:370240..371693 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	159749.K0S7H9
ProteomeId	EsuBft499_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	96
Hectar predicted targeting category	other localisation
Evalue	1.13e-09
EggNOG OGs	2D06V@1\|root,2SD1E@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft499_2a	EsuBft499_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 370240..371693 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_2a-0001-exon	agat-exon-76050	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 370240..370388 +
EsuBft499_2a-0001-exon	agat-exon-76051	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 370656..371127 +
EsuBft499_2a-0001-exon	EsuBft499_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 371349..371693 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_2a-0001-cds	EsuBft499_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 370240..370388 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_2a-0001	EsuBft499_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 370240..371693 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:370240..371693+
coding sequence from alignment at Scaffold_30:370240..371693+

spliced messenger RNA

>EsuBft499_2a-0001 ID=EsuBft499_2a-0001|Name=EsuBft499_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=966bp|location=Sequence derived from alignment at Scaffold_30:370240..371693+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGCAAGACCTCGCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCC
CATCGAAGGAAATGCAGACGTGGACGCACGGGCGTGTACCGAGGGCGAGG
ACAACCAGTACAAGGAGGAAGTGTCCGCCACCCAAGCAAACCGCTTGTGG
GACTTTCGGGGGCACGGTGGTTTCAAGCGAGATTCAAGGGGGGTGCACAG
GAGGGACTGGATCATGTCGGAAGAGGACCTCAAGGATGAGCTCATCAAGT
GGATGAGGACACAGAAGCGCCTTACGGTCAAGGACGTCCAGAACTACATC
AACCAGTGGCTCTTCGCGAGCGAGATCGGGGATTTATCAACACTCCTTTC
GTACCAGGTGAACCTTCCCGTGTCCATGTCCACAACCCACTCCTGGATGA
TCGCGCTGGGGTGCAAGTACGAGCAGGCTACGAAGTCTTTCTACACGGAC
GGCCACGAGGAGAAGGTCGTGGTGGTGTACCGCGGCAAGTACATCGACGT
GAAGCGGAAGCTCGCCCTTCGGCAACCGTTGTGGGTGCGAGTTCAACGAG
ACACTCTGACACCGGAGGAGCTTCAGCGGCTTGACGGCATCAAAGGTCCG
GCGGAGGATTTCTGCGCAGAGGACGAGAGTGTCTACAAGGTGTATGCGCG
CGAGGGCAAGGAGTGGGTTCTCCAAGGGGTACGCGGGATACGGAAAAGAA
ACGAGGGCCCGGGAGAGATGGTATCTGCCTTTCAAGACGAGAGGCACGGC
TTTGGCTTGCCTTTGACGGACGACGTGCTCCAGGCGGTGAACGCGCGTCG
CAAGGAGAAGGGCAAGGAAGACCTGACACGAAGCCCTGACCTGCGGTTTC
TCCAGCACGGGAAGAACAAGGATGGATACTGGGGATACGACGAGTTCAAG
GAACAGATCGAGGACGTCTTGGACGTCTTGGACGTCTTTAGCGTTATGCG
TGACTTGATGCCGTGA

protein sequence of EsuBft499_2a-0001

>EsuBft499_2 ID=EsuBft499_2|Name=EsuBft499_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=321bp
MAEQDLASLLAPLPPSPIEGNADVDARACTEGEDNQYKEEVSATQANRLW
DFRGHGGFKRDSRGVHRRDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYI
NQWLFASEIGDLSTLLSYQVNLPVSMSTTHSWMIALGCKYEQATKSFYTD
GHEEKVVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGP
AEDFCAEDESVYKVYAREGKEWVLQGVRGIRKRNEGPGEMVSAFQDERHG
FGLPLTDDVLQAVNARRKEKGKEDLTRSPDLRFLQHGKNKDGYWGYDEFK
EQIEDVLDVLDVFSVMRDLMP

mRNA from alignment at Scaffold_30:370240..371693+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft499_2a-0001 ID=EsuBft499_2a-0001|Name=EsuBft499_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1454bp|location=Sequence derived from alignment at Scaffold_30:370240..371693+ (Ectocarpus subulatus male Bft15b)
ATGGCGGAGCAAGACCTCGCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCC
CATCGAAGGAAATGCAGACGTGGACGCACGGGCGTGTACCGAGGGCGAGG
ACAACCAGTACAAGGAGGAAGTGTCCGCCACCCAAGCAAACCGCTTGTGG
TATCAAGGGCACTCGGCATTGACGGTGTTGAAGTAGGAGCGGAAGCGCGA
CCTTCGGCAACTGGAACTCACGCAGCAGGCGAAGCGCTTGTCGGATGAGT
CGTACACGACGATCCCAGCGGTGAAGGCAGCAGAGGCCAAACGGTTTGAG
CTGTTGAACGAGGCCTCGCGTCGTCGACACGAGTCGTCGCTCTTGCGGAT
CGCGGCGAGAGTAAACTCCGCTGGCTCGCGGGTTTACGCGGCATCGACAA
TCCTGGGGTAACTCAGGGACTTTCGGGGGCACGGTGGTTTCAAGCGAGAT
TCAAGGGGGGTGCACAGGAGGGACTGGATCATGTCGGAAGAGGACCTCAA
GGATGAGCTCATCAAGTGGATGAGGACACAGAAGCGCCTTACGGTCAAGG
ACGTCCAGAACTACATCAACCAGTGGCTCTTCGCGAGCGAGATCGGGGAT
TTATCAACACTCCTTTCGTACCAGGTGAACCTTCCCGTGTCCATGTCCAC
AACCCACTCCTGGATGATCGCGCTGGGGTGCAAGTACGAGCAGGCTACGA
AGTCTTTCTACACGGACGGCCACGAGGAGAAGGTCGTGGTGGTGTACCGC
GGCAAGTACATCGACGTGAAGCGGAAGCTCGCCCTTCGGCAACCGTTGTG
GGTGCGAGTTCAACGAGACACTCTGACACCGGAGGAGCTTCAGCGGCTTG
ACGGCATCAAAGGTCCGGCGGAGGATTTCTGCGCAGAGGTTTACGATGCG
TGGTAGAGGGGCGCGAGTGCATCGATTTCCACGTCGATCTCCTGCGGGAC
AACGGCTCCGTCGATCGATTCGACGCTCTCCGTGCTGAACATGGACCGGA
AGGCGGGCACTACAGCGTCCGCTTCGAAGAAGCTGCTGCTCTTCCATGCG
AGCATTTTCACACCCCGGCGAAGTGCAAATGCAACAGGAAGGTGCGCCAC
ATCGGACAGGACGAGAGTGTCTACAAGGTGTATGCGCGCGAGGGCAAGGA
GTGGGTTCTCCAAGGGGTACGCGGGATACGGAAAAGAAACGAGGGCCCGG
GAGAGATGGTATCTGCCTTTCAAGACGAGAGGCACGGCTTTGGCTTGCCT
TTGACGGACGACGTGCTCCAGGCGGTGAACGCGCGTCGCAAGGAGAAGGG
CAAGGAAGACCTGACACGAAGCCCTGACCTGCGGTTTCTCCAGCACGGGA
AGAACAAGGATGGATACTGGGGATACGACGAGTTCAAGGAACAGATCGAG
GACGTCTTGGACGTCTTGGACGTCTTTAGCGTTATGCGTGACTTGATGCC
GTGA

Coding sequence (CDS) from alignment at Scaffold_30:370240..371693+

>EsuBft499_2a-0001 ID=EsuBft499_2a-0001|Name=EsuBft499_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=966bp|location=Sequence derived from alignment at Scaffold_30:370240..371693+ (Ectocarpus subulatus male Bft15b)
ATGGCGGAGCAAGACCTCGCGAGTCTTCTCGCCCCTCTCCCCCCCTCGCC
CATCGAAGGAAATGCAGACGTGGACGCACGGGCGTGTACCGAGGGCGAGG
ACAACCAGTACAAGGAGGAAGTGTCCGCCACCCAAGCAAACCGCTTGTGG
GACTTTCGGGGGCACGGTGGTTTCAAGCGAGATTCAAGGGGGGTGCACAG
GAGGGACTGGATCATGTCGGAAGAGGACCTCAAGGATGAGCTCATCAAGT
GGATGAGGACACAGAAGCGCCTTACGGTCAAGGACGTCCAGAACTACATC
AACCAGTGGCTCTTCGCGAGCGAGATCGGGGATTTATCAACACTCCTTTC
GTACCAGGTGAACCTTCCCGTGTCCATGTCCACAACCCACTCCTGGATGA
TCGCGCTGGGGTGCAAGTACGAGCAGGCTACGAAGTCTTTCTACACGGAC
GGCCACGAGGAGAAGGTCGTGGTGGTGTACCGCGGCAAGTACATCGACGT
GAAGCGGAAGCTCGCCCTTCGGCAACCGTTGTGGGTGCGAGTTCAACGAG
ACACTCTGACACCGGAGGAGCTTCAGCGGCTTGACGGCATCAAAGGTCCG
GCGGAGGATTTCTGCGCAGAGGACGAGAGTGTCTACAAGGTGTATGCGCG
CGAGGGCAAGGAGTGGGTTCTCCAAGGGGTACGCGGGATACGGAAAAGAA
ACGAGGGCCCGGGAGAGATGGTATCTGCCTTTCAAGACGAGAGGCACGGC
TTTGGCTTGCCTTTGACGGACGACGTGCTCCAGGCGGTGAACGCGCGTCG
CAAGGAGAAGGGCAAGGAAGACCTGACACGAAGCCCTGACCTGCGGTTTC
TCCAGCACGGGAAGAACAAGGATGGATACTGGGGATACGACGAGTTCAAG
GAACAGATCGAGGACGTCTTGGACGTCTTGGACGTCTTTAGCGTTATGCG
TGACTTGATGCCGTGA