EsuBft499_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft499_22a-0001
Unique Name	EsuBft499_22a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:118235..123536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft499_22
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	133
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft499_22a	EsuBft499_22a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 118235..123536 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_22a-0001	EsuBft499_22	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 122167..122626 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_22a-0001-exon	agat-exon-76134	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 118235..118345 +
EsuBft499_22a-0001-exon	agat-exon-76135	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 121993..122183 +
EsuBft499_22a-0001-exon	EsuBft499_22a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 122506..123536 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_22a-0001-exon	agat-five_prime_utr-10924	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_30 118235..118345 +
EsuBft499_22a-0001-exon	agat-five_prime_utr-10925	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_30 121993..122166 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_22a-0001-cds	EsuBft499_22a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 122167..122183 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_22a-0001-exon	agat-three_prime_utr-17183	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 122627..123536 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:118235..123536+
coding sequence from alignment at Scaffold_30:118235..123536+

spliced messenger RNA

>EsuBft499_22a-0001 ID=EsuBft499_22a-0001|Name=EsuBft499_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1333bp|location=Sequence derived from alignment at Scaffold_30:118235..123536+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGCGGCGCACATGGTACGGGAGCGAACGCCTTCGCGGACAGCAGA
AGGACAGTAGCGAGCGTGGGAGTTCCCCTTCCCGGGTCGGTGGCACCCGC
TGTGTTTTACGGAACACAGGGAACGGATGGCCGGGGAGGCACAAGCGTCG
AGGGGGAGCGGTTGGTCAACGCACTCACCTTCGGGTCTTTGGGAAGTGGT
ACCAACAAGGTGTATCAAAGGATGTGGAACACGTGGAAGGAGGCTCGTGC
AGGGGCGGGTTCGGGCCCGTGACTCCGCGAGTGCGATGGGGTGGAAAGTG
CGCTTCAGAAATCTGGGCGGACGACTCGGGGCTTTTGTACTCAGATTTCT
GTCTAACAAGAGGAGACCTGGGTTTCTTTTGCGGTCCGGTAAGGGTTGCA
TGGGCAGACCGGAGGCAGGCTAGCCGAGTGGAAGTCACGTTCAGAGCGTC
AAAGGCAGTTCAAAAACGTTTTGGAGCAACCGTCACTAGATCGGGAGAAG
CGTTGAAGGTGTTACTCGACATGTTAGATCTGCACCCCGAGCTTGGGAGT
CATGCGCCGTTGACGCAATCGTGGGCACAAGACAGGTGGAAGGTTATTTC
GAGGGCAGAGGCATCGAGACACCTCAGGTTACTCGCGAGTGCGGCGGGTA
GAGACCCACACAAGTATACGTTGCATTCAGGAAGGATTGGGGGGGCCACG
CACCTAGCAAGTTTGAGGGCGTCGGTAATCCAGATCCAGAGAGCCGGGAG
GTGGAAATCATCGGCTTTTATGGTGTACGTTATGGCGGGGGGTGAAGGAG
CAAAGTTTGTGTCTCAGGCCCTTACGGAACCCGAGGAGTGGCCAGGGAGC
GGTTCGGAGGAGTAGGTCATCGGACATGCTCAATGGAGTAAGATGTGTTT
AGGCCAGAGGCCGAAACAATAGTAATGATAGTAGGGCAATCTTGCGAAGT
TTGCAACGGGTTAGTCCGACAAGAAAACGTTGGGAACAAGACGGCATTTT
ACCTCCGCTCTCAATTTGTTTCATGTGTCTTGGTCTTTCTTTGGTTGCCT
GCAGAAAAAAACAATCCAGCATTCTTGAGCAAACATATACGAGAAGATTC
AGAACGTATTGGAATCTGTGGTTTGTGGAGGCGTGTTGGAATTCGGAAAA
GCGGGGATCGAAGAAAACTAGAGGCAGCCCTGGTGTCAGACAGTTTTTGT
GCTCTCGCTGGGCGAGAGACAAGCAAGTGCATTTGAGAGAAGGAGAGGAG
TAGCAGAGATGGCAGCTTTGAGGAGCAGCAAACACGGAGTGCCGCCTATG
ATTTGATCGATTTTCCCGCCCACCCACACCTAT

protein sequence of EsuBft499_22a-0001

>EsuBft499_22 ID=EsuBft499_22|Name=EsuBft499_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=45bp
MGWKVRFRNLGGRLGAFVLRFLSNKRRPGFLLRSGKGCMGRPEAG

mRNA from alignment at Scaffold_30:118235..123536+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft499_22a-0001 ID=EsuBft499_22a-0001|Name=EsuBft499_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5302bp|location=Sequence derived from alignment at Scaffold_30:118235..123536+ (Ectocarpus subulatus male Bft15b)
GGGGGGGCGGCGCACATGGTACGGGAGCGAACGCCTTCGCGGACAGCAGA
AGGACAGTAGCGAGCGTGGGAGTTCCCCTTCCCGGGTCGGTGGCACCCGC
TGTGTTTTACGGTGAGAGCATGAGTTGTGAACCTGCAATTTCCCATACTG
TTAACTGTTTGAATTAGTTTTCGCCTTGCATGGTGGCGGACACCACTCAC
GCCGAAACGTCAAAAACAGTAGCTACGGGGGTAGACACCCTCGGCGCTAA
GTACGGGTCAAATAACAAGCAAGCGGAGGACACCGCACGGGTGATAGATA
AGTCAAAACTTTTGGCGGACACCAATTGTGCGAATACTGACACACACCGG
GCGGACACCCGGTGTGAACATGCATTTCCCTCACTCTCGCAAATGGTGGA
CGCCGGTCCCGCGAAAAACTCACTAACGGAATACCTATTCGCGGACACCA
ATAGCGGGATCAATTACTGCTCTGCCTTGTACACTACGAAGGCTGTGGCG
GACACCACACGTGCTGAACACTGCAATGCATATGCCTCGGGGGCTGACAG
GGTGAATGTAATTGGCCCCGCGGCACGCAAGCGGTGGACGCCGCGAGCGT
TGTCGGTAAACAAAAAATACTGGCGGACACCAGTAGTGTGAAGAAGGACA
TACACAGGCCGGACACCCTGTTTAAGAATTTGTCAGTCACACAGCCCCGA
TTGGCGTTTCCCATTCGCGGGAACGACACGGAATTGGCGGACACCATGAC
CGTGTCAAAAGCTCTCCCGGGGGCGGACACCCCGTGGGAAGCACTGTTCG
CACGTAGGGCACTAGCGGCGGACACTGCTAGGGCCGCTGACATCACAAAA
GTAATGCGACATGATTGCGGGTCGAATTCAGCGGGCGGGGAAAGAACCTT
CGGCCCTAGAGAGTCCAAAAAATACAACCTTGTTGAAAAATTCAAAAACT
CTGACCGATAGACTCGAGGTACAGAGAAGCATACTCGCGTCAACCATACA
CTCACTAGACGAGAAGCAATGTATCATTCGGAAAATGGCGGACATTGGTA
GTGATTTGGTAAAGCTCCACGATGGAAGGCTGGGAGACGTCGCGAGGGGA
ATCGGCGACACTCTGGTGTCACCGCCGTTGGACGTGAGCGACGTCAAGCA
GTATTTCGGAGAGGAGAAAGGCTTCCCGGGTATCGATGACCTCATTGAGA
TAGTCGGTGAAGGAGCCCCGGCCCCCACTCTAGACTCGCAGCAAAACCTT
AAGAAAGCCTTGGCATACGGCAACCATCGTAGCGTAAACGATCACCAAAC
ACAAGTGTGGGAAAAACTGTGCGACGATGTTAAGCGTAACAAGTGTATTG
TCCTGAGAAAGGCGAACGCGTCGGACGCACGTGGGATCAGAGCAGCCCCG
TTGGGAGCGGTCTCAGGAAAAAAAGCGAGGATCGTCAACGACTTCTCTTT
TGACCCAAGCACTAGCAAGGGGTTAAAAGGTGGACTCAACAAAGATACCA
TTATGTTTGGAGTTCCACGTTGCCATTGCGGCGAACCACTACCAGCTTTC
CTCGAGGAGCTCACTAGCCTACGAGTAAGATGGCCCGACAAGAGAATCCT
CGCAGCCAAGGCTGATGTCACCTCTGCGTTCAGAAATGTGAGGATATCAC
CAGATCATGCACACAAGTTTTGCTACGTGATAGGAGACGTGCTAGTAGCG
GATCTACGGCTGACCTTTGGCTGGGCAGCGTCACCAGGATTGTGGGGTGT
GTTAGCCTCCGCTGCAGAGCACTCGCACCGCAACACGTCCCTCGCGAACG
CTAGACTACTTCCAGAAGGAATCGCAATGATGTCCCACGTGAAAAAAAAA
CTCCTTGGGAAAAAGGCACCCCAACGCCCATACCATTGTCGGCAGGCGTA
AGACCGCATAGAAGCGGGGGACCCGCGGACGATTTCTTGGCCAGGGTCTA
CATTGACGATTTCTTGCTCACGAAGGTACAGCATGACCCCACTGACCAAT
CGGCACTCATTGCTTCCGTCTCGCTAGCGTCGGACCATGTCAGACTGTTT
GGCAGGGGAGAAGTCGGAGAAACTCCCATTCTCGCCCCGAAAAAGAGCAC
TGACTGGGACACGGTCATAGAGGCCCTGGGGTACATCATAGACACGCATG
ATGGCAGAATTGCAACTACACCCGAACGGGTAAGCGCGATTCGGAACATA
CTAGAGGCAAATTGGCCCCACGATAGGAAGAAGGCCAGCGTTCAAGAAGT
CCTCAGCATTGCAGGAAAACTGTGGAACCTCACTTACGTTATCAGGGCTG
GTAGGTACTTCGTGTGGCGACTGCTCCGCCTATCGGGTCTGCATACGCAA
GCCAGTCGACACACACGGTCACGACGACTAGTGGACTTGGGTAGAGAGTT
CCACGGCGATATCGCCTTCTGGAAGTGGGCCCTCAATCAGCCACTGGCAC
TTCGAGGGGAGTCCCTCAGCGCATCGTTCCTACTCTACGTAAAGCGAGCA
CCTTCACGCCTTTACCTCTCAGACGCTAGCTTCACAGCGATTGGCGGCTA
CTGTCCCGAACTAAAAACTTTCTGGAGATACACGATCGAATCATCGTTGT
CTGCANGTCCTCAGCATTGCAGGAAAACTGTGGAACCTCACTTACGTTAT
CAGGGCTGGTAGGTACTTCGTGTGGCGACTGCTCCGCCTATCGGGTCTGC
ATACGCAAGCCAGTCGACACACACGGTCACGACGACTAGTGGACTTGGGT
AGAGAGTTCCACGGCGATATCGCCTTCTGGAAGTGGGCCCTCAATCAGCC
ACTGGCACTTCGAGGGGAGTCCCTCAGCGCATCGTTCCTACTCTACGTAA
AGCGAGCACCTTCACGCCTTTACCTCTCAGACGCTAGCTTCACAGCGATT
GGCGGCTACTGTCCCGAACTAAAAACTTTCTGGAGATACACGATCGAATC
ATCGTTGTCTGCAGAGCTCAAGCGCAAGGCGCAAGAGAAGGAGACGGCAG
ACATTACGATCAATCTGTTTGAACTCGCGGGCATGTTCATGACGGCGTGG
GTAGTCCAAATGATCTTGAAAGACAGACCTATACAAGAAGGACAGTCGGT
GTTGATGCGTGGAGACAACGTGTCGGCCGTCAGTTGGACCAGCAGGTGTG
GAGGATCGCGGGACAGGCGCGCGAGCCTCAAAATGAGACTCATGGGTAGG
ATGGAAATTTCTTGCGGCTGGTGCCACGTGGCCAAGCACATCCCTGGTCG
AAAGAACACACTCGCGGACGGGATCTCACGTTGGGAAGTCAACGAGATCG
CCGCCAATGTAAAAATGATCACGAAAGACTCAGGGTGGACACAGCAGGAT
ATTGGAGAAGGGCGACGAGCGTTGCTTAGCATTATCCTACAAAAGAAATT
GCCAAAAGAGAGTCTGGACGACTCGGTATGGGACATGATGGTCCAAGGAA
CAGAAAACATGGCAGCGGGGGCGGTTGGACACCGCTCTGTGTTCCGGACG
ATCAACGAATTATCAAACGAAATGAGATAGCGAGAAGCTGGAGCGGTGGA
CACGCCTCACATTCACTGTTTCATGACGCCTTGATGAAATGGATAGCCGG
AGGAGGCAGAGTTGGTTTGGACGACCAAGTTTTCCTGTTCTCCCCTCAAG
CCAAGTCGGGGCTATCCATGGGTTCGGCAGGAACCTGTCGTACCTTAGAA
AGGAACCTCGAAATGTGCGCATTCCTCGCGCTATGTATACCCGATGATTG
TATATCAGGAACACAGGGAACGGATGGCCGGGGAGGCACAAGCGTCGAGG
GGGAGCGGTTGGTCAACGCACTCACCTTCGGGTCTTTGGGAAGTGGTACC
AACAAGGTGTATCAAAGGATGTGGAACACGTGGAAGGAGGCTCGTGCAGG
GGCGGGTTCGGGCCCGTGACTCCGCGAGTGCGATGGGGTGGAAAGTGCGG
TGCGTGAGCTGTCGGTGTCAATGGCTTGCCGGTGTTTCGGTCACAAGAAC
CAGAGTCAGACTATCCGCGGGTATCTCTCAGCCATCAAGTACTTCCATAA
GATGCACGCAGGTTGGGAGTTGCCCGCTGCGCATTTCCAGATCCTTGCCA
TGCTGAAGACCATTGATAGGGTCCACGTCAATACGCAGACGAAGCCTAAG
GTTAGGAATCCACTCACATGCAACATGCTAGAGGCTGGAAAGTGCGTGGT
CGAAAATTCGGGAGAATCAGGGAAGTTGATCTGGTGCGGACTTGCCCTCT
CGTACTTGCTGACGTGCCGAGCTTCAGAAATCTGGGCGGACGACTCGGGG
CTTTTGTACTCAGATTTCTGTCTAACAAGAGGAGACCTGGGTTTCTTTTG
CGGTCCGGTAAGGGTTGCATGGGCAGACCGGAGGCAGGCTAGCCGAGTGG
AAGTCACGTTCAGAGCGTCAAAGGCAGTTCAAAAACGTTTTGGAGCAACC
GTCACTAGATCGGGAGAAGCGTTGAAGGTGTTACTCGACATGTTAGATCT
GCACCCCGAGCTTGGGAGTCATGCGCCGTTGACGCAATCGTGGGCACAAG
ACAGGTGGAAGGTTATTTCGAGGGCAGAGGCATCGAGACACCTCAGGTTA
CTCGCGAGTGCGGCGGGTAGAGACCCACACAAGTATACGTTGCATTCAGG
AAGGATTGGGGGGGCCACGCACCTAGCAAGTTTGAGGGCGTCGGTAATCC
AGATCCAGAGAGCCGGGAGGTGGAAATCATCGGCTTTTATGGTGTACGTT
ATGGCGGGGGGTGAAGGAGCAAAGTTTGTGTCTCAGGCCCTTACGGAACC
CGAGGAGTGGCCAGGGAGCGGTTCGGAGGAGTAGGTCATCGGACATGCTC
AATGGAGTAAGATGTGTTTAGGCCAGAGGCCGAAACAATAGTAATGATAG
TAGGGCAATCTTGCGAAGTTTGCAACGGGTTAGTCCGACAAGAAAACGTT
GGGAACAAGACGGCATTTTACCTCCGCTCTCAATTTGTTTCATGTGTCTT
GGTCTTTCTTTGGTTGCCTGCAGAAAAAAACAATCCAGCATTCTTGAGCA
AACATATACGAGAAGATTCAGAACGTATTGGAATCTGTGGTTTGTGGAGG
CGTGTTGGAATTCGGAAAAGCGGGGATCGAAGAAAACTAGAGGCAGCCCT
GGTGTCAGACAGTTTTTGTGCTCTCGCTGGGCGAGAGACAAGCAAGTGCA
TTTGAGAGAAGGAGAGGAGTAGCAGAGATGGCAGCTTTGAGGAGCAGCAA
ACACGGAGTGCCGCCTATGATTTGATCGATTTTCCCGCCCACCCACACCT
AT

Coding sequence (CDS) from alignment at Scaffold_30:118235..123536+

>EsuBft499_22a-0001 ID=EsuBft499_22a-0001|Name=EsuBft499_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=138bp|location=Sequence derived from alignment at Scaffold_30:118235..123536+ (Ectocarpus subulatus male Bft15b)
ATGGGGTGGAAAGTGCGCTTCAGAAATCTGGGCGGACGACTCGGGGCTTT
TGTACTCAGATTTCTGTCTAACAAGAGGAGACCTGGGTTTCTTTTGCGGT
CCGGTAAGGGTTGCATGGGCAGACCGGAGGCAGGCTAG