EsuBft499_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft499_21a-0001
Unique Name	EsuBft499_21a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:125663..126865 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	13735.ENSPSIP00000000727
ProteomeId	EsuBft499_21
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	line-1 retrotransposable element orf2 protein os:mus musculus gn:pol pe:1 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1203
Hectar predicted targeting category	other localisation
Evalue	2.85e-51
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3CYKV@33213\|Bilateria,487I3@7711\|Chordata,4962T@7742\|Vertebrata,4CKCN@8459\|Testudines
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00004,RC00039,RC00041
KEGG ko	ko:K04257,ko:K13506
KEGG Reaction	R00851,R09380
KEGG Pathway	ko00561,ko00564,ko01100,ko01110,ko04740,map00561,map00564,map01100,map01110,map04740
KEGG Module	M00089
EC	2.3.1.15
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04030

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft499_21a	EsuBft499_21a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 125663..126865 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_21a-0001-exon	EsuBft499_21a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 125663..126865 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_21a-0001-exon	agat-three_prime_utr-17182	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 125663..126199 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_21a-0001-cds	EsuBft499_21a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 126200..126865 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_21a-0001	EsuBft499_21	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 126200..126865 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:125663..126865-
coding sequence from alignment at Scaffold_30:125663..126865-

spliced messenger RNA

>EsuBft499_21a-0001 ID=EsuBft499_21a-0001|Name=EsuBft499_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1203bp|location=Sequence derived from alignment at Scaffold_30:125663..126865- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACATAGCACCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAA
GATCGATGACGACGAACTCTTCGTCCTGGGACACCTCCATACCATCCTCG
TCAAGGTGTGGAACGGAGGAGATGTTCCGCGAGAGTGGAAGGATGCAACC
ATCAAGGTGCTGTACAAGAAGGGTGACCGATCCAACTGTAACAACTACAA
GGGGATTTCACTACTATTTCACGTAGGCAAGGTCCCCATCAAGATCATCA
CCAACCGTCCAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAA
CAGTGCGGATTTCGTTCCGGGCGATCCACCGTCGACATGCTGTTCGTCGT
GTGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAGAGACCGCTCTACATGT
GCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTA
TGGAAGGTGCTGGCCAGGGCCGGGATTCCAGCGAAGCTGATCGAAGTCAT
GCGCCAATTCTACGATGGAATGCGGGCCCGTGTGCGCATGGACGACGGAG
AACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTG
AATGTTGTTCAAGATCTTCTTCGTCGAGGTCCTCGAGGTCGTTGTCATCC
GATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGATGTGCTTGGAGGAG
GGGAAGACGGAAGCGGGGGGGGGGGAGGAGACACCCCTTGACCGAGTACG
GAGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGA
GGTCTGCAGAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTC
GGGGAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGAT
GCGCGCAAAGGACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCAC
CGCTGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGACC
GGTACCTCGGTGGCCTCGTCAACGAACATGGCGATCTCACCCGGAAGATC
GACTACAGGAGCAGAGGAGCGTGGGCGTGCCTCAGGTGATATGGCCGGGA
GCTCTTCGACAGACCGCAAGCGCCATTCCGACTCAAGACCCGCCTGCTCC
AGGCGGAGGCGATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCA
CTC

protein sequence of EsuBft499_21a-0001

>EsuBft499_21 ID=EsuBft499_21|Name=EsuBft499_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MYIAPPGHDSLPAELLKIDDDELFVLGHLHTILVKVWNGGDVPREWKDAT
IKVLYKKGDRSNCNNYKGISLLFHVGKVPIKIITNRPSAFCEANNILPEE
QCGFRSGRSTVDMLFVVCRLQELGRRKKRPLYMCFVDLNKAYDSVDREML
WKVLARAGIPAKLIEVMRQFYDGMRARVRMDDGELSDWFFVTQGVRQGCV
NVVQDLLRRGPRGRCHPIQRG

mRNA from alignment at Scaffold_30:125663..126865-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft499_21a-0001 ID=EsuBft499_21a-0001|Name=EsuBft499_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1203bp|location=Sequence derived from alignment at Scaffold_30:125663..126865- (Ectocarpus subulatus male Bft15b)
ATGTACATAGCACCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAA
GATCGATGACGACGAACTCTTCGTCCTGGGACACCTCCATACCATCCTCG
TCAAGGTGTGGAACGGAGGAGATGTTCCGCGAGAGTGGAAGGATGCAACC
ATCAAGGTGCTGTACAAGAAGGGTGACCGATCCAACTGTAACAACTACAA
GGGGATTTCACTACTATTTCACGTAGGCAAGGTCCCCATCAAGATCATCA
CCAACCGTCCAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAA
CAGTGCGGATTTCGTTCCGGGCGATCCACCGTCGACATGCTGTTCGTCGT
GTGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAGAGACCGCTCTACATGT
GCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTA
TGGAAGGTGCTGGCCAGGGCCGGGATTCCAGCGAAGCTGATCGAAGTCAT
GCGCCAATTCTACGATGGAATGCGGGCCCGTGTGCGCATGGACGACGGAG
AACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTG
AATGTTGTTCAAGATCTTCTTCGTCGAGGTCCTCGAGGTCGTTGTCATCC
GATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGATGTGCTTGGAGGAG
GGGAAGACGGAAGCGGGGGGGGGGGAGGAGACACCCCTTGACCGAGTACG
GAGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGA
GGTCTGCAGAAGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTC
GGGGAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGAT
GCGCGCAAAGGACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCAC
CGCTGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGACC
GGTACCTCGGTGGCCTCGTCAACGAACATGGCGATCTCACCCGGAAGATC
GACTACAGGAGCAGAGGAGCGTGGGCGTGCCTCAGGTGATATGGCCGGGA
GCTCTTCGACAGACCGCAAGCGCCATTCCGACTCAAGACCCGCCTGCTCC
AGGCGGAGGCGATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCA
CTC

Coding sequence (CDS) from alignment at Scaffold_30:125663..126865-

>EsuBft499_21a-0001 ID=EsuBft499_21a-0001|Name=EsuBft499_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=666bp|location=Sequence derived from alignment at Scaffold_30:125663..126865- (Ectocarpus subulatus male Bft15b)
ATGTACATAGCACCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAA
GATCGATGACGACGAACTCTTCGTCCTGGGACACCTCCATACCATCCTCG
TCAAGGTGTGGAACGGAGGAGATGTTCCGCGAGAGTGGAAGGATGCAACC
ATCAAGGTGCTGTACAAGAAGGGTGACCGATCCAACTGTAACAACTACAA
GGGGATTTCACTACTATTTCACGTAGGCAAGGTCCCCATCAAGATCATCA
CCAACCGTCCAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAA
CAGTGCGGATTTCGTTCCGGGCGATCCACCGTCGACATGCTGTTCGTCGT
GTGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAGAGACCGCTCTACATGT
GCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTA
TGGAAGGTGCTGGCCAGGGCCGGGATTCCAGCGAAGCTGATCGAAGTCAT
GCGCCAATTCTACGATGGAATGCGGGCCCGTGTGCGCATGGACGACGGAG
AACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTG
AATGTTGTTCAAGATCTTCTTCGTCGAGGTCCTCGAGGTCGTTGTCATCC
GATTCAGCGAGGATGA