EsuBft499_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft499_19a-0001
Unique Name	EsuBft499_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:143952..146964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft499_19
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	301
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft499_19a	EsuBft499_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 143952..146964 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_19a-0001-exon	EsuBft499_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 143952..146964 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_19a-0001-cds	EsuBft499_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 143952..144218 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_19a-0001-exon	agat-three_prime_utr-17181	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 144219..146964 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft499_19a-0001	EsuBft499_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 143952..144218 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:143952..146964+
coding sequence from alignment at Scaffold_30:143952..146964+

spliced messenger RNA

>EsuBft499_19a-0001 ID=EsuBft499_19a-0001|Name=EsuBft499_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3013bp|location=Sequence derived from alignment at Scaffold_30:143952..146964+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGCATGCTGCCATCGCTACTGCAGGCCGAGTCGGAAGGGCAAGG
CCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCGCCGCTTGTGCGGCGGAAT
TGGGGGTTCCGCCGAGCAGCCACCGAGAGCTGTGTCCTGCGATGGTCGTC
AGGGAGGGCGACACTGCTGGAGGAGAGAGAAGCAGTAGGTCGGGCGTGGA
AGGCGCCCTGGTGCGGGATGTGGAGGTCCCTGCTGCAGGTGGGTTTGGTG
CATTCCAAGACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGCGGGCATCCTTTGGAGA
ATCGAGTTTGATTGGTTTTTCAGTTGGAAACAGGTCATGATTTTGAGTTC
GTGTAGGATTGCAGATGGTTGAACCGAAGGCAGGGAGAACGTACCTGTTC
GATGCAGTTTTCGTGTGGAATGCAGATAGTCAGGGAGGGCATTGCCTGTA
TGTGTGTGACACCTGAAAAGTCAGTTGGTGCTGCACAGCAAGGAGTTCGT
TCCGTCATGTCGGGAGGATTTGTCAGAGGCGTTGCTCGAGGTAGTAGAGC
GTTGCCTAGAATTTGTAATCCGAGCGTCTGGAGTGGTTTTATCTTTGTCT
TCTTGCAGTACGGCCGCTGGAATCATTGGTGATATGGACGGCTATTGGCT
TTTGTTTGAGCCGTTGGAATCTTGCGTGATATGATCGGCGTGAGGCGTTG
AATTTCTGAGGGGTTTTGATCCGGTGGCCGAGTTTCCCCTTTACTTTTGG
TTTGTCGTTGTGTTTCGGTTTTTCGGACGTATTTTCGACGCACTAGAGGT
TCTTCACTGGCGTAAAGAACCAGGGAGGGTGTTCGTGCGTAGAAGTAGAT
AGTCGAAAAGTAGCCGTTACGTAGGACGCAGCTGGGACAACTTGAAGGGT
ATGTGCTGAGAGGCTTTGGATGATAGTGCGGAGTCCCCGTGTTCTCTCGA
GAATTGGGGCCCTCTCCTCCTTCTCCCTCTCTCCTCTCTCATGCGAGCTA
ATACACACAGTTAAACAGCAGCCCCAAGTCCGCCGGCCCTCAACAGGGCT
AGGGCTCACAAAC

protein sequence of EsuBft499_19a-0001

>EsuBft499_19 ID=EsuBft499_19|Name=EsuBft499_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MMGMLPSLLQAESEGQGQEGSAALQEGAACAAELGVPPSSHRELCPAMVV
REGDTAGGERSSRSGVEGALVRDVEVPAAGGFGAFQDTX

mRNA from alignment at Scaffold_30:143952..146964+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft499_19a-0001 ID=EsuBft499_19a-0001|Name=EsuBft499_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3013bp|location=Sequence derived from alignment at Scaffold_30:143952..146964+ (Ectocarpus subulatus male Bft15b)
ATGATGGGCATGCTGCCATCGCTACTGCAGGCCGAGTCGGAAGGGCAAGG
CCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCGCCGCTTGTGCGGCGGAAT
TGGGGGTTCCGCCGAGCAGCCACCGAGAGCTGTGTCCTGCGATGGTCGTC
AGGGAGGGCGACACTGCTGGAGGAGAGAGAAGCAGTAGGTCGGGCGTGGA
AGGCGCCCTGGTGCGGGATGTGGAGGTCCCTGCTGCAGGTGGGTTTGGTG
CATTCCAAGACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATCGAGTTTGATTGGTTTTTCAGTTGGAAACAGGTCATGATTTTGAGTTC
GTGTAGGATTGCAGATGGTTGAACCGAAGGCAGGGAGAACGTACCTGTTC
GATGCAGTTTTCGTGTGGAATGCAGATAGTCAGGGAGGGCATTGCCTGTA
TGTGTGTGACACCTGAAAAGTCAGTTGGTGCTGCACAGCAAGGAGTTCGT
TCCGTCATGTCGGGAGGATTTGTCAGAGGCGTTGCTCGAGGTAGTAGAGC
GTTGCCTAGAATTTGTAATCCGAGCGTCTGGAGTGGTTTTATCTTTGTCT
TCTTGCAGTACGGCCGCTGGAATCATTGGTGATATGGACGGCTATTGGCT
TTTGTTTGAGCCGTTGGAATCTTGCGTGATATGATCGGCGTGAGGCGTTG
AATTTCTGAGGGGTTTTGATCCGGTGGCCGAGTTTCCCCTTTACTTTTGG
TTTGTCGTTGTGTTTCGGTTTTTCGGACGTATTTTCGACGCACTAGAGGT
TCTTCACTGGCGTAAAGAACCAGGGAGGGTGTTCGTGCGTAGAAGTAGAT
AGTCGAAAAGTAGCCGTTACGTAGGACGCAGCTGGGACAACTTGAAGGGT
ATGTGCTGAGAGGCTTTGGATGATAGTGCGGAGTCCCCGTGTTCTCTCGA
GAATTGGGGCCCTCTCCTCCTTCTCCCTCTCTCCTCTCTCATGCGAGCTA
ATACACACAGTTAAACAGCAGCCCCAAGTCCGCCGGCCCTCAACAGGGCT
AGGGCTCACAAAC

Coding sequence (CDS) from alignment at Scaffold_30:143952..146964+

>EsuBft499_19a-0001 ID=EsuBft499_19a-0001|Name=EsuBft499_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=267bp|location=Sequence derived from alignment at Scaffold_30:143952..146964+ (Ectocarpus subulatus male Bft15b)
ATGATGGGCATGCTGCCATCGCTACTGCAGGCCGAGTCGGAAGGGCAAGG
CCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCGCCGCTTGTGCGGCGGAAT
TGGGGGTTCCGCCGAGCAGCCACCGAGAGCTGTGTCCTGCGATGGTCGTC
AGGGAGGGCGACACTGCTGGAGGAGAGAGAAGCAGTAGGTCGGGCGTGGA
AGGCGCCCTGGTGCGGGATGTGGAGGTCCCTGCTGCAGGTGGGTTTGGTG
CATTCCAAGACACNNNN