EsuBft499_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft499_18a-0001
Unique NameEsuBft499_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:149616..151627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZZ7
ProteomeIdEsuBft499_18
Protein domainsIPR011990
Protein domainsPTHR19959
Protein domainsIPR019734
Protein domainsIPR013105
Protein domainsSSF48452
Protein domainsPF13424
Ownerapollo_admin@sb-roscoff.fr
Notekinesin light chain os:strongylocentrotus purpuratus pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1416
Hectar predicted targeting categoryother localisation
Evalue1.23e-16
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Descriptiondetermination of stomach left/right asymmetry
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0007017
GO0000003
GO0044707
GO0005737
GO1902578
GO0051649
GO0016043
GO0042995
GO0044767
GO0005875
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft499_18aEsuBft499_18aEctocarpus subulatus male Bft15bgeneScaffold_30 149616..151627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_18a-0001EsuBft499_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 149616..151627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_18a-0001-exonagat-exon-76131Ectocarpus subulatus male Bft15bexonScaffold_30 149616..150110 -
EsuBft499_18a-0001-exonagat-exon-76129Ectocarpus subulatus male Bft15bexonScaffold_30 150155..150310 -
EsuBft499_18a-0001-exonEsuBft499_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 150469..150802 -
EsuBft499_18a-0001-exonagat-exon-76130Ectocarpus subulatus male Bft15bexonScaffold_30 150989..151398 -
EsuBft499_18a-0001-exonagat-exon-76132Ectocarpus subulatus male Bft15bexonScaffold_30 151607..151627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_18a-0001-cdsEsuBft499_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 149616..150110 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft499_18a-0001 ID=EsuBft499_18a-0001|Name=EsuBft499_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1416bp|location=Sequence derived from alignment at Scaffold_30:149616..151627- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCGCTGGCCGAGAGGGTCTTCGTCGACAAACTTGGAGCGACGGA
TGCGAGCAACGTGCTACGCGGCGCGGCTAACCTACCGCGCGACGGAGACT
TGTGTGACGACGCCTTGAAAGTGCTGGAGACCTATGGGGGGGTGGCGATG
GACATTGCGTTTGTGGGGAGCTGGAGCTCTGTGCGTACTCCTGACAGCTG
CGCACCAAAGAGCAGCTGGGCGTGGACACGTGCCGTGGAAGAAATCGAGG
CCCAGGGTGGAGGGGTTGGCGTTGATAGAGACGCCAACAGACTTGCAATT
CTGCGCGCGGGCTTCATGTACCTAGCGAGGGACTACCCTTTGGCCCAGGA
GCTGTACGATAAGCTCGCGGCGTTCCCCGATCGCCATTCCTTCAGGAGTC
AGACGCAGCTGCGCTTCTGGACGACCAAGAGGGTCGACGCGTACGCGATG
TTTAACATGCGGAAGACTTCGGAGGAGGCGGGGGGTGAGGGGTGGTGGGT
TTATCGACCGCACGACGAGCAGCTTATACCGATGGAGGCTTCGGATGCAT
CGCAGGTTCATGCTGTTCATGTTCTCGCCGAATTATGCTGTCACGGCGAA
AAACTCGGCGAACTAGAGGCAATCATGCGGAAGCTACTTGAACACTACGA
TGCCCACGGGGGAGGCTGCCCAGAGGTGGAGATGATAGCTCTCTATATTA
TACCGGAAATGCTCTTGGTTGGCTGGGACGCCATTCCGAGCGGGAAGCAG
CTGAGTGCCGTTGAGGTGGGCGGTGGTCTTGCGACAAGCTTTCAGGGCGG
CTTCGCAAAGGTTGAACTAGGCGAGTGTGCACAGAAGGCGGGCCGGCTGG
GGGACGCGGAAGCCTGGTTTAGGCAAGCGCTGAAGATCCAGGAGGCCAAT
TTGGGGGGCGATAAAGTCCAGGAGGGGAGAAAAATTGTGGAGGCGGAGGT
GTTTTTTCGGCGAGCGTTGAAGATCAAGGAGACCACGCTGGGGCCCGACG
GCTTCGCCGTTGCCGTGGTGCTGTACGAGCTGGTTCTGTGTGTGCGTGAG
GCGGGGAAGTTTGCGGAGACGGAGGCGTTGTTGAGGCGAGCTGTGCACAT
CTGTGTGTACAAGCTGAGGGCTGACGACCTGCAGGTTTCCGTAGTGCTGC
ACGGGCTGGGTCCGTGTCTGCGTGAGGCGGGGAAGTTTACGGAGGCGGAG
GCGTTGTTTAGGCGAGGGCTGGAGATTCGCGAGGCCACGCTGGGGCCCGG
CGATCGTATGTTGGTCGTGACGCTGAACGAGCTGGGTGGGTGCCTGCGTA
AGGCGGGGGAATCGGCGGGGGTGGAGGCTTTTCTTAGGCGAGTGCTGAAG
ATCAAGGAGGCCAAGCTGGGGCCCGAAGACGTCCGAGTTGGTTCCACGCT
GCAACACAGGCGGTGA
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protein sequence of EsuBft499_18a-0001

>EsuBft499_18 ID=EsuBft499_18|Name=EsuBft499_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=471bp
MLSLAERVFVDKLGATDASNVLRGAANLPRDGDLCDDALKVLETYGGVAM
DIAFVGSWSSVRTPDSCAPKSSWAWTRAVEEIEAQGGGVGVDRDANRLAI
LRAGFMYLARDYPLAQELYDKLAAFPDRHSFRSQTQLRFWTTKRVDAYAM
FNMRKTSEEAGGEGWWVYRPHDEQLIPMEASDASQVHAVHVLAELCCHGE
KLGELEAIMRKLLEHYDAHGGGCPEVEMIALYIIPEMLLVGWDAIPSGKQ
LSAVEVGGGLATSFQGGFAKVELGECAQKAGRLGDAEAWFRQALKIQEAN
LGGDKVQEGRKIVEAEVFFRRALKIKETTLGPDGFAVAVVLYELVLCVRE
AGKFAETEALLRRAVHICVYKLRADDLQVSVVLHGLGPCLREAGKFTEAE
ALFRRGLEIREATLGPGDRMLVVTLNELGGCLRKAGESAGVEAFLRRVLK
IKEAKLGPEDVRVGSTLQHRR
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mRNA from alignment at Scaffold_30:149616..151627-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft499_18a-0001 ID=EsuBft499_18a-0001|Name=EsuBft499_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2012bp|location=Sequence derived from alignment at Scaffold_30:149616..151627- (Ectocarpus subulatus male Bft15b)
ATGCTCTCGCTGGCCGAGAGGGTCAGTAAGTTGATAAAGTCGTCCGTTCT
CCGGAGACGGGGGAGGCCGGGGAGGGCTATGTGAAGACGATAGTGGAACT
AACGACGAAGCAGTGCCTTGAAGTGGCCGATGATGTGTGGGAGGAAGAAG
TGGTCGAGAAGCTGGGAGAAACGGTTATGTGGGTGCTCCTTACAACCAGG
TTCCCCGAGTTGGTCGAATCTTGTGACAGGTCTTCGTCGACAAACTTGGA
GCGACGGATGCGAGCAACGTGCTACGCGGCGCGGCTAACCTACCGCGCGA
CGGAGACTTGTGTGACGACGCCTTGAAAGTGCTGGAGACCTATGGGGGGG
TGGCGATGGACATTGCGTTTGTGGGGAGCTGGAGCTCTGTGCGTACTCCT
GACAGCTGCGCACCAAAGAGCAGCTGGGCGTGGACACGTGCCGTGGAAGA
AATCGAGGCCCAGGGTGGAGGGGTTGGCGTTGATAGAGACGCCAACAGAC
TTGCAATTCTGCGCGCGGGCTTCATGTACCTAGCGAGGGACTACCCTTTG
GCCCAGGAGCTGTACGATAAGCTCGCGGCGTTCCCCGATCGCCATTCCTT
CAGGAGTCAGACGCAGCTGCGCTTCTGGACGACCAAGAGGTAGTAGCGGG
ACCGATCGATCTTTCAGGGGTGGGGTGTTCTCAGAGCGCATGTATCAAAC
CAGTACCGCATGCACGACGCCCACGTGGGATTCGCGAGGGACGAGCTTAA
CGCTTGGGGTAGAATGCGCAAGGAAGCCGTGGAAAGGTGGACGTCCCGTG
TCTCTCGTTTGGACTTAGCGGTCAGGGTCGACGCGTACGCGATGTTTAAC
ATGCGGAAGACTTCGGAGGAGGCGGGGGGTGAGGGGTGGTGGGTTTATCG
ACCGCACGACGAGCAGCTTATACCGATGGAGGCTTCGGATGCATCGCAGG
TTCATGCTGTTCATGTTCTCGCCGAATTATGCTGTCACGGCGAAAAACTC
GGCGAACTAGAGGCAATCATGCGGAAGCTACTTGAACACTACGATGCCCA
CGGGGGAGGCTGCCCAGAGGTGGAGATGATAGCTCTCTATATTATACCGG
AAATGCTCTTGGTTGGCTGGGACGCCATTCCGAGCGGGAAGCAGCTGAGT
GCCGTTGAGGTGAGTTGGGCGCTACTGGCTTGCAGCTTACGCGGCCCATC
GACGGCACTGGTTCCATGCAAATGTCTACGACCTTCTGTATATACGGAGT
TTGTGCGAGAGCAGCCGGAAACCTGGATGACGCCGAGGACTGGTTTCAAA
CAGCTTTGAAGGCTCAGGTGGGCGGTGGTCTTGCGACAAGCTTTCAGGGC
GGCTTCGCAAAGGTTGAACTAGGCGAGTGTGCACAGAAGGCGGGCCGGCT
GGGGGACGCGGAAGCCTGGTTTAGGCAAGCGCTGAAGATCCAGGAGGCCA
ATTTGGGGGGCGATAAAGTCCAGGTTGCCTGTAGACTATGCTGAAAGACC
TGGGTCTGTGTTTGAAGGAGGGGAGAAAAATTGTGGAGGCGGAGGTGTTT
TTTCGGCGAGCGTTGAAGATCAAGGAGACCACGCTGGGGCCCGACGGCTT
CGCCGTTGCCGTGGTGCTGTACGAGCTGGTTCTGTGTGTGCGTGAGGCGG
GGAAGTTTGCGGAGACGGAGGCGTTGTTGAGGCGAGCTGTGCACATCTGT
GTGTACAAGCTGAGGGCTGACGACCTGCAGGTTTCCGTAGTGCTGCACGG
GCTGGGTCCGTGTCTGCGTGAGGCGGGGAAGTTTACGGAGGCGGAGGCGT
TGTTTAGGCGAGGGCTGGAGATTCGCGAGGCCACGCTGGGGCCCGGCGAT
CGTATGTTGGTCGTGACGCTGAACGAGCTGGGTGGGTGCCTGCGTAAGGC
GGGGGAATCGGCGGGGGTGGAGGCTTTTCTTAGGCGAGTGCTGAAGATCA
AGGAGGCCAAGCTGGGGCCCGAAGACGTCCGAGTTGGTTCCACGCTGCAA
CACAGGCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_30:149616..151627-

>EsuBft499_18a-0001 ID=EsuBft499_18a-0001|Name=EsuBft499_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1416bp|location=Sequence derived from alignment at Scaffold_30:149616..151627- (Ectocarpus subulatus male Bft15b)
ATGCTCTCGCTGGCCGAGAGGGTCTTCGTCGACAAACTTGGAGCGACGGA
TGCGAGCAACGTGCTACGCGGCGCGGCTAACCTACCGCGCGACGGAGACT
TGTGTGACGACGCCTTGAAAGTGCTGGAGACCTATGGGGGGGTGGCGATG
GACATTGCGTTTGTGGGGAGCTGGAGCTCTGTGCGTACTCCTGACAGCTG
CGCACCAAAGAGCAGCTGGGCGTGGACACGTGCCGTGGAAGAAATCGAGG
CCCAGGGTGGAGGGGTTGGCGTTGATAGAGACGCCAACAGACTTGCAATT
CTGCGCGCGGGCTTCATGTACCTAGCGAGGGACTACCCTTTGGCCCAGGA
GCTGTACGATAAGCTCGCGGCGTTCCCCGATCGCCATTCCTTCAGGAGTC
AGACGCAGCTGCGCTTCTGGACGACCAAGAGGGTCGACGCGTACGCGATG
TTTAACATGCGGAAGACTTCGGAGGAGGCGGGGGGTGAGGGGTGGTGGGT
TTATCGACCGCACGACGAGCAGCTTATACCGATGGAGGCTTCGGATGCAT
CGCAGGTTCATGCTGTTCATGTTCTCGCCGAATTATGCTGTCACGGCGAA
AAACTCGGCGAACTAGAGGCAATCATGCGGAAGCTACTTGAACACTACGA
TGCCCACGGGGGAGGCTGCCCAGAGGTGGAGATGATAGCTCTCTATATTA
TACCGGAAATGCTCTTGGTTGGCTGGGACGCCATTCCGAGCGGGAAGCAG
CTGAGTGCCGTTGAGGTGGGCGGTGGTCTTGCGACAAGCTTTCAGGGCGG
CTTCGCAAAGGTTGAACTAGGCGAGTGTGCACAGAAGGCGGGCCGGCTGG
GGGACGCGGAAGCCTGGTTTAGGCAAGCGCTGAAGATCCAGGAGGCCAAT
TTGGGGGGCGATAAAGTCCAGGAGGGGAGAAAAATTGTGGAGGCGGAGGT
GTTTTTTCGGCGAGCGTTGAAGATCAAGGAGACCACGCTGGGGCCCGACG
GCTTCGCCGTTGCCGTGGTGCTGTACGAGCTGGTTCTGTGTGTGCGTGAG
GCGGGGAAGTTTGCGGAGACGGAGGCGTTGTTGAGGCGAGCTGTGCACAT
CTGTGTGTACAAGCTGAGGGCTGACGACCTGCAGGTTTCCGTAGTGCTGC
ACGGGCTGGGTCCGTGTCTGCGTGAGGCGGGGAAGTTTACGGAGGCGGAG
GCGTTGTTTAGGCGAGGGCTGGAGATTCGCGAGGCCACGCTGGGGCCCGG
CGATCGTATGTTGGTCGTGACGCTGAACGAGCTGGGTGGGTGCCTGCGTA
AGGCGGGGGAATCGGCGGGGGTGGAGGCTTTTCTTAGGCGAGTGCTGAAG
ATCAAGGAGGCCAAGCTGGGGCCCGAAGACGTCCGAGTTGGTTCCACGCT
GCAACACAGGCGGTGA
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