EsuBft499_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft499_13a-0001
Unique NameEsuBft499_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:211953..213572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft499_13
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length139
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft499_13aEsuBft499_13aEctocarpus subulatus male Bft15bgeneScaffold_30 211953..213572 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_13a-0001-exonagat-exon-76099Ectocarpus subulatus male Bft15bexonScaffold_30 211953..212002 -
EsuBft499_13a-0001-exonEsuBft499_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 212064..212194 -
EsuBft499_13a-0001-exonagat-exon-76098Ectocarpus subulatus male Bft15bexonScaffold_30 212358..213572 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_13a-0001-exonagat-three_prime_utr-17177Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 211953..211989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_13a-0001-cdsEsuBft499_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 211990..212002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_13a-0001EsuBft499_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 211990..213572 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft499_13a-0001 ID=EsuBft499_13a-0001|Name=EsuBft499_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1396bp|location=Sequence derived from alignment at Scaffold_30:211953..213572- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGGAAGAGACGCCCCAGGGAGCTCTTCGTGAGCAAAAGACCAT
ACACGACCCTGAACCATGTGTACAGCCGTCAGAGCGCCTCAAGTCCCTGA
CGTCGACCAAGATCTTTAGAGGTGAAAACCTCCAAAACGCCCTCCATGAG
ATGCTCCAAACCGCAAAGTCCTTAACCGAGAAAGGACCAACTATCAACCA
AACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCA
TGACAATGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTG
CTAAAGGAAGTAATGATCGAATCCAAGGCAATCAAGGACAAGCTGGAGCA
GGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCCACG
GTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGT
GGTCGTGGCGGGGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGG
CGGTCGCGGCGGCGGCGGCGGCGGGGGTCGCGGCGGCCGCTCAGGCGGAT
CCGGAGGAGTCGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGC
GGCGGTGGCGGGGACTATGAGTTCCCGGGCCGGTCCTTTAGGTGTGGACA
TCGTAGACATCAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCCTGC
CGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAATGTGCGCG
ACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGA
CTCCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGT
GTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGATGTGGAACAAGGCCAG
GCGGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGC
AGACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCG
GAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTA
GTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGC
CCATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTGGCGG
AGGAGGGCCACACGTATTCGGGGATGAAGGGGGGCCTCACGCTGACCACG
AAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGACCCA
ACGAGGCTATCAAATAAAGCCAACGCTACACACCGCCTGTGCCGCACTCA
TTGTTCCTGGCGATGCGAAAGCAGCCAACCCCACTGACCTCAACGAGGAG
TGCAGCTGACGGATGGACCGCTGCTACCCTGTCTTGGCTGTTCGAT
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protein sequence of EsuBft499_13a-0001

>EsuBft499_13 ID=EsuBft499_13|Name=EsuBft499_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=452bp
MKREETPQGALREQKTIHDPEPCVQPSERLKSLTSTKIFRGENLQNALHE
MLQTAKSLTEKGPTINQTFVLHLFLDALSDEYAMTMHNLRHAKELTRTGV
LKEVMIESKAIKDKLEQGKGKGAKGAEQAYFAHGEGRRERYSSRSQGQGR
GRGGGRGRSSSRGRGGGGRGGGGGGGRGGRSGGSGGVEESKGSSSGGADG
GGGGDYEFPGRSFRCGHRRHQAIGCTTNEKDFLPWCARCEGWGHTKEMCA
TEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGDVEQGQ
AVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTL
VLQTEDGGVPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTT
KAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEE
CS
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mRNA from alignment at Scaffold_30:211953..213572-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft499_13a-0001 ID=EsuBft499_13a-0001|Name=EsuBft499_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1620bp|location=Sequence derived from alignment at Scaffold_30:211953..213572- (Ectocarpus subulatus male Bft15b)
ATGAAGAGGGAAGAGACGCCCCAGGGAGCTCTTCGTGAGCAAAAGACCAT
ACACGACCCTGAACCATGTGTACAGCCGTCAGAGCGCCTCAAGTCCCTGA
CGTCGACCAAGATCTTTAGAGGTGAAAACCTCCAAAACGCCCTCCATGAG
ATGCTCCAAACCGCAAAGTCCTTAACCGAGAAAGGACCAACTATCAACCA
AACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCA
TGACAATGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTG
CTAAAGGAAGTAATGATCGAATCCAAGGCAATCAAGGACAAGCTGGAGCA
GGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCCACG
GTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGT
GGTCGTGGCGGGGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGG
CGGTCGCGGCGGCGGCGGCGGCGGGGGTCGCGGCGGCCGCTCAGGCGGAT
CCGGAGGAGTCGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGC
GGCGGTGGCGGGGACTATGAGTTCCCGGGCCGGTCCTTTAGGTGTGGACA
TCGTAGACATCAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCCTGC
CGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAATGTGCGCG
ACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGA
CTCCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGT
GTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGATGTGGAACAAGGCCAG
GCGGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGC
AGACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCG
GAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTA
GTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGC
CCATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTGGCGG
AGGAGGGCCACACGTATTCGGGGATGAAGGGGGGCCTCACGCTGACCACG
AAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGACCCA
ACGAGGCTATCAATTAAAGCCAACGCTAAACACCGCCTGTGCCGCACTCA
TTGTTCCTGGCGATNAAGGGCCACGCGTATTCGGGGATGAAGGGGGGCCT
CACGCTGACTACGAAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAA
AGCTGCTGACCCAACGAGGCTATCAAATAAAGCCAACGCTACACACCGCC
TGTGCCGCACTCATTGTTCCTGGCGATGCGAAAGCAGCCAACCCCACTGA
CCTCAACGAGTACCACCTCGCGCACGGCCATGCCCACGAGACATTGCTCA
GGATCACGGCGGAGCAGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTA
CCCTGTCTTGGCTGTTCGAT
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Coding sequence (CDS) from alignment at Scaffold_30:211953..213572-

>EsuBft499_13a-0001 ID=EsuBft499_13a-0001|Name=EsuBft499_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1359bp|location=Sequence derived from alignment at Scaffold_30:211953..213572- (Ectocarpus subulatus male Bft15b)
ATGAAGAGGGAAGAGACGCCCCAGGGAGCTCTTCGTGAGCAAAAGACCAT
ACACGACCCTGAACCATGTGTACAGCCGTCAGAGCGCCTCAAGTCCCTGA
CGTCGACCAAGATCTTTAGAGGTGAAAACCTCCAAAACGCCCTCCATGAG
ATGCTCCAAACCGCAAAGTCCTTAACCGAGAAAGGACCAACTATCAACCA
AACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCA
TGACAATGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTG
CTAAAGGAAGTAATGATCGAATCCAAGGCAATCAAGGACAAGCTGGAGCA
GGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCCACG
GTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGT
GGTCGTGGCGGGGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGG
CGGTCGCGGCGGCGGCGGCGGCGGGGGTCGCGGCGGCCGCTCAGGCGGAT
CCGGAGGAGTCGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGC
GGCGGTGGCGGGGACTATGAGTTCCCGGGCCGGTCCTTTAGGTGTGGACA
TCGTAGACATCAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCCTGC
CGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAATGTGCGCG
ACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGA
CTCCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGT
GTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGATGTGGAACAAGGCCAG
GCGGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGC
AGACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCG
GAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTA
GTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGC
CCATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTGGCGG
AGGAGGGCCACACGTATTCGGGGATGAAGGGGGGCCTCACGCTGACCACG
AAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGACCCA
ACGAGGCTATCAAATAAAGCCAACGCTACACACCGCCTGTGCCGCACTCA
TTGTTCCTGGCGATGCGAAAGCAGCCAACCCCACTGACCTCAACGAGGAG
TGCAGCTGA
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