EsuBft4999_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4999_2a-0001
Unique NameEsuBft4999_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:326093..326506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4999_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length35
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4999_2aEsuBft4999_2aEctocarpus subulatus male Bft15bgeneScaffold_385 326093..326506 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4999_2a-0001-exonEsuBft4999_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 326093..326407 -
EsuBft4999_2a-0001-exonagat-exon-62060Ectocarpus subulatus male Bft15bexonScaffold_385 326468..326506 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4999_2a-0001-exonagat-three_prime_utr-17173Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 326093..326338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4999_2a-0001-cdsEsuBft4999_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 326339..326407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4999_2a-0001EsuBft4999_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 326339..326506 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4999_2a-0001 ID=EsuBft4999_2a-0001|Name=EsuBft4999_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=354bp|location=Sequence derived from alignment at Scaffold_385:326093..326506- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTAGCCGTACGACAAATTACACTGGAAAGTGTGAGTGACGTAGA
AAAACTTGATGGGACAGTTTGCATTGCGGGACTGCCTGCGTTGAAGATCG
TTGAGTAGCCACATATTATCAGAACAGCAAGGAACGTTCTGTGGGAATGT
TCTTCGTGGATGGTGCATTACCCCGAGTGTGTTTCTTGTGGATAGTGCAT
CAGTCAGATGATTCATGGTACGTTGTGATGTACGTTAGCCCCTGTCTGTT
GAGTCTTTGTGTTCCGATATCATTAGGTTCTGCTTTTGTGCGTTGGTCGA
GCGACACGGGTGGTGGCTGCGGTGCTGCGGTGCTGTGGTGCTCCCCACCC
TTGC
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protein sequence of EsuBft4999_2a-0001

>EsuBft4999_2 ID=EsuBft4999_2|Name=EsuBft4999_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=35bp
MVVAVRQITLESVSDVEKLDGTVCIAGLPALKIVE
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mRNA from alignment at Scaffold_385:326093..326506-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4999_2a-0001 ID=EsuBft4999_2a-0001|Name=EsuBft4999_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=414bp|location=Sequence derived from alignment at Scaffold_385:326093..326506- (Ectocarpus subulatus male Bft15b)
ATGGTTGTAGCCGTACGACAAATTACACTGGAAAGTGTGGTACTCTACAT
AAACTGAGGGCCTGTTGTTCGTGATAGTTGCTGCTGTGTGTGTCGACAGA
GTGACGTAGAAAAACTTGATGGGACAGTTTGCATTGCGGGACTGCCTGCG
TTGAAGATCGTTGAGTAGCCACATATTATCAGAACAGCAAGGAACGTTCT
GTGGGAATGTTCTTCGTGGATGGTGCATTACCCCGAGTGTGTTTCTTGTG
GATAGTGCATCAGTCAGATGATTCATGGTACGTTGTGATGTACGTTAGCC
CCTGTCTGTTGAGTCTTTGTGTTCCGATATCATTAGGTTCTGCTTTTGTG
CGTTGGTCGAGCGACACGGGTGGTGGCTGCGGTGCTGCGGTGCTGTGGTG
CTCCCCACCCTTGC
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Coding sequence (CDS) from alignment at Scaffold_385:326093..326506-

>EsuBft4999_2a-0001 ID=EsuBft4999_2a-0001|Name=EsuBft4999_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=108bp|location=Sequence derived from alignment at Scaffold_385:326093..326506- (Ectocarpus subulatus male Bft15b)
ATGGTTGTAGCCGTACGACAAATTACACTGGAAAGTGTGAGTGACGTAGA
AAAACTTGATGGGACAGTTTGCATTGCGGGACTGCCTGCGTTGAAGATCG
TTGAGTAG
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