EsuBft4930_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4930_3a-0001
Unique Name	EsuBft4930_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:40218..41411 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft4930_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	119
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4930_3a	EsuBft4930_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 40218..41411 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4930_3a-0001-exon	EsuBft4930_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 40218..41411 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4930_3a-0001-cds	EsuBft4930_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 40218..40874 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4930_3a-0001-exon	agat-three_prime_utr-17102	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 40875..41411 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4930_3a-0001	EsuBft4930_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 40218..40874 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:40218..41411+
coding sequence from alignment at Scaffold_129:40218..41411+

spliced messenger RNA

>EsuBft4930_3a-0001 ID=EsuBft4930_3a-0001|Name=EsuBft4930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1194bp|location=Sequence derived from alignment at Scaffold_129:40218..41411+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTCTGGAGCACCACCCTCAGGAGGCGGTACCACCCACGAGGGA
CAACCCCTACGGAGGTCAAGAGGCCAGGAACATGGCATACGCACGAACGA
AAAGCTCGCAAGGGCAAGGGGGACACGCGTTCCTGAGAGCGGCTCCCACC
GACCGAGCTCGAGAGATTCCATCGAACGAATTCGTCTACGCGACGAGACG
CGCCTTCGGAGTTAAAGAATTCTTGGCGGAAAGATGTCCCAGGTGCCACA
GAGGCAGGGAAGGCGAGATCATCACAACGGTGCACGCAAGGACCTGTCCA
AGGGATGGAGCACAGGTCAACATGAACGAGCCGTTAAAATACGCACTATC
GAGAGCACTCAACGGCCTTCGCGTAAAACACGACGTTGAAAGCGGGGCAC
CGTTCACGGGGGAAAGAAACCTGAGCATGGACATCAGGCCAGGAGCCCCA
CGAACGCATCTTCTCCCGGGTACCGCAACAAAGGAATACTCCTCGATGTC
ACACACGCAGACCCGCAAGCACAGGTACACTTGCGGAACGGCAGCGCGAC
CAGCGATGGAATCGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCACT
ACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCAGCTTTAAACTTACC
ACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAGTT
CATCGATGAACTTGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGA
TGGATCTGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACAC
AGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGG
CGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGAACCAGTCAAC
GCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGT
TTGAAGTTAGCGTCTTGTTTGAGAGTAGATGTGACAGATTTGCGTAGAAT
AGTGTATGATGTTATCATGAACGGAGAAGAAAGGGCGTTTCCAACACGGA
GATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTTACAAGAGGA
CATGAACGCAGTAGTATTTTAGCAAGCTTACGAACGCATGTAGGATACCA
TGAGGATTGTCATTGGTTTTATTTCAAATTGAAGAGAAGATATT

protein sequence of EsuBft4930_3a-0001

>EsuBft4930_3 ID=EsuBft4930_3|Name=EsuBft4930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MESLEHHPQEAVPPTRDNPYGGQEARNMAYARTKSSQGQGGHAFLRAAPT
DRAREIPSNEFVYATRRAFGVKEFLAERCPRCHRGREGEIITTVHARTCP
RDGAQVNMNEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIRPGAP
RTHLLPGTATKEYSSMSHTQTRKHRYTCGTAARPAMESQPKHPRRESVST
TLVRDTCPLTNAALNLPP

mRNA from alignment at Scaffold_129:40218..41411+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4930_3a-0001 ID=EsuBft4930_3a-0001|Name=EsuBft4930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1194bp|location=Sequence derived from alignment at Scaffold_129:40218..41411+ (Ectocarpus subulatus male Bft15b)
ATGGAGTCTCTGGAGCACCACCCTCAGGAGGCGGTACCACCCACGAGGGA
CAACCCCTACGGAGGTCAAGAGGCCAGGAACATGGCATACGCACGAACGA
AAAGCTCGCAAGGGCAAGGGGGACACGCGTTCCTGAGAGCGGCTCCCACC
GACCGAGCTCGAGAGATTCCATCGAACGAATTCGTCTACGCGACGAGACG
CGCCTTCGGAGTTAAAGAATTCTTGGCGGAAAGATGTCCCAGGTGCCACA
GAGGCAGGGAAGGCGAGATCATCACAACGGTGCACGCAAGGACCTGTCCA
AGGGATGGAGCACAGGTCAACATGAACGAGCCGTTAAAATACGCACTATC
GAGAGCACTCAACGGCCTTCGCGTAAAACACGACGTTGAAAGCGGGGCAC
CGTTCACGGGGGAAAGAAACCTGAGCATGGACATCAGGCCAGGAGCCCCA
CGAACGCATCTTCTCCCGGGTACCGCAACAAAGGAATACTCCTCGATGTC
ACACACGCAGACCCGCAAGCACAGGTACACTTGCGGAACGGCAGCGCGAC
CAGCGATGGAATCGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCACT
ACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCAGCTTTAAACTTACC
ACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAGTT
CATCGATGAACTTGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGA
TGGATCTGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACAC
AGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGG
CGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGAACCAGTCAAC
GCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGT
TTGAAGTTAGCGTCTTGTTTGAGAGTAGATGTGACAGATTTGCGTAGAAT
AGTGTATGATGTTATCATGAACGGAGAAGAAAGGGCGTTTCCAACACGGA
GATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTTACAAGAGGA
CATGAACGCAGTAGTATTTTAGCAAGCTTACGAACGCATGTAGGATACCA
TGAGGATTGTCATTGGTTTTATTTCAAATTGAAGAGAAGATATT

Coding sequence (CDS) from alignment at Scaffold_129:40218..41411+

>EsuBft4930_3a-0001 ID=EsuBft4930_3a-0001|Name=EsuBft4930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_129:40218..41411+ (Ectocarpus subulatus male Bft15b)
ATGGAGTCTCTGGAGCACCACCCTCAGGAGGCGGTACCACCCACGAGGGA
CAACCCCTACGGAGGTCAAGAGGCCAGGAACATGGCATACGCACGAACGA
AAAGCTCGCAAGGGCAAGGGGGACACGCGTTCCTGAGAGCGGCTCCCACC
GACCGAGCTCGAGAGATTCCATCGAACGAATTCGTCTACGCGACGAGACG
CGCCTTCGGAGTTAAAGAATTCTTGGCGGAAAGATGTCCCAGGTGCCACA
GAGGCAGGGAAGGCGAGATCATCACAACGGTGCACGCAAGGACCTGTCCA
AGGGATGGAGCACAGGTCAACATGAACGAGCCGTTAAAATACGCACTATC
GAGAGCACTCAACGGCCTTCGCGTAAAACACGACGTTGAAAGCGGGGCAC
CGTTCACGGGGGAAAGAAACCTGAGCATGGACATCAGGCCAGGAGCCCCA
CGAACGCATCTTCTCCCGGGTACCGCAACAAAGGAATACTCCTCGATGTC
ACACACGCAGACCCGCAAGCACAGGTACACTTGCGGAACGGCAGCGCGAC
CAGCGATGGAATCGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCACT
ACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCAGCTTTAAACTTACC
ACCTTAG