EsuBft4927_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4927_2a-0001
Unique NameEsuBft4927_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:208219..209738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4927_2
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length119
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4927_2aEsuBft4927_2aEctocarpus subulatus male Bft15bgeneScaffold_390 208219..209738 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4927_2a-0001-exonagat-exon-25417Ectocarpus subulatus male Bft15bexonScaffold_390 208219..208787 -
EsuBft4927_2a-0001-exonEsuBft4927_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 209117..209738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4927_2a-0001-cdsEsuBft4927_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 208219..208787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4927_2a-0001EsuBft4927_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 208219..209738 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4927_2a-0001 ID=EsuBft4927_2a-0001|Name=EsuBft4927_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1191bp|location=Sequence derived from alignment at Scaffold_390:208219..209738- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAAACCCTTAGCAGGACGCAGCGCACCCTTCATGCGACTCGCCG
NGCTCTACCTAACTTCGTTTCCCATGGTGGTGGAGCGGTCCTGCTCGCAA
TATCTTATTGGGGTGTTTCTTGCTTCGTGGTCCTGGTTGAGCTCCTCGCC
CTGACGACTCCTACTCAAACCTATAGAATCTCCGTGGGTACCCTCGGTCG
AAGCATCTTTACGAGGAGTCAACCTGGTGAGCTATTCCGGGAGTCGGACA
AGGAACTTCCGGTACACGTAGGGACTCTGACCAACCTCGGCAACTTCAAG
GGGGTCTACCTCGACGACAACAAGCTCAACCTTCGGAAGATCCGGAACAT
CACCACGTTTCGGGCCTTCCGAGTGGGTAAGGTAGCAGGGGAGGTTTCCG
TGTGGGCCAAGCGCTTCATGCACAGCGATGCCTGGCTTGGTCTGACAGCG
ACCGGCGGGGCCCAGGTCGACGCCAACCCACACCGTCTCTTCCGGTTCGC
TGCGCCGACTTTCGACATCGTGCCTCCTTTTGAGCTCAAGACGGTCGACC
CCACCGTGATCGCCCCCATCGAGAAGCGCTACATCGCGACGCGGCCCCGC
CTAGAGGCTGCTTACGCACTAGCTCCTGACGGTGTGGTCGACGCTCTATT
GGCTGAGCAGAGCGACTCGCTGAAGTTGTTGCGCTCCGGAGGAACGATCA
ACAACTTCGACCTCCCAATGGAATGGCTCCACACGGCGATCCCGCCAGCG
CCTTTGCCTCCCTCTGCGGGCGCGACCGCGGACGGAGTGGACAACACACC
CTCTCGGGCGAACGGGGTGTCAGGGCCCTCTAAGAGAAAGGCCTTAAACC
CAGTGCGTCCTACGTCGCTAACACCACCCAGCGTTGGCGACATCGCATGC
TTCAAGGCGGAGGAAGCTCCGTTTGTGCTGGGGGAGGTGCTGAGCATAGC
TGCAGACGCCTCGCCGGTGAACGTCGACATCCACTGGTATGGGCCTATCA
ACAATACCGTTAGGGCGGGAGCGGGCAGCGCGACTATCGAGGACTATGCC
GTGGCGCGTTTCAGCAAGGATTTCATCCTAACAAGCGGCGCGAAGCGCAG
AACGCACGATGCCAGCGACGAGCCTATCCCACGCATTATCGCATGCTGCA
GCTCGCTAACTTCAACGGGTAACATCCCGGCGAGAATTTAA
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protein sequence of EsuBft4927_2a-0001

>EsuBft4927_2 ID=EsuBft4927_2|Name=EsuBft4927_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=396bp
MPKTLSRTQRTLHATRRALPNFVSHGGGAVLLAISYWGVSCFVVLVELLA
LTTPTQTYRISVGTLGRSIFTRSQPGELFRESDKELPVHVGTLTNLGNFK
GVYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTA
TGGAQVDANPHRLFRFAAPTFDIVPPFELKTVDPTVIAPIEKRYIATRPR
LEAAYALAPDGVVDALLAEQSDSLKLLRSGGTINNFDLPMEWLHTAIPPA
PLPPSAGATADGVDNTPSRANGVSGPSKRKALNPVRPTSLTPPSVGDIAC
FKAEEAPFVLGEVLSIAADASPVNVDIHWYGPINNTVRAGAGSATIEDYA
VARFSKDFILTSGAKRRTHDASDEPIPRIIACCSSLTSTGNIPARI
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mRNA from alignment at Scaffold_390:208219..209738-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4927_2a-0001 ID=EsuBft4927_2a-0001|Name=EsuBft4927_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1520bp|location=Sequence derived from alignment at Scaffold_390:208219..209738- (Ectocarpus subulatus male Bft15b)
ATGCCGAAAACCCTTAGCAGGACGCAGCGCACCCTTCATGCGACTCGCCG
NGCTCTACCTAACTTCGTTTCCCATGGTGGTGGAGCGGTCCTGCTCGCAA
TATCTTATTGGGGTGTTTCTTGCTTCGTGGTCCTGGTTGAGCTCCTCGCC
CTGACGACTCCTACTCAAACCTATAGAATCTCCGTGGGTACCCTCGGTCG
AAGCATCTTTACGAGGAGTCAACCTGGTGAGCTATTCCGGGAGTCGGACA
AGGAACTTCCGGTACACGTAGGGACTCTGACCAACCTCGGCAACTTCAAG
GGGGTCTACCTCGACGACAACAAGCTCAACCTTCGGAAGATCCGGAACAT
CACCACGTTTCGGGCCTTCCGAGTGGGTAAGGTAGCAGGGGAGGTTTCCG
TGTGGGCCAAGCGCTTCATGCACAGCGATGCCTGGCTTGGTCTGACAGCG
ACCGGCGGGGCCCAGGTCGACGCCAACCCACACCGTCTCTTCCGGTTCGC
TGCGCCGACTTTCGACATCGTGCCTCCTTTTGAGCTCAAGACGGTCGACC
CCACCGTGATCGCCCCCATCGAGAAGCGCTACATCGCGACGCGGCCCCGC
CTAGAGGCTGCTTACGCACTAGGTAAGGGGCGTGCACATGTGTAGTATGG
TCGTGCTTCGCTCGGCCTCACAGAGCATGAGAGTGGTTACACCTTTCGAA
TGTAACATTGGCGTTACCTTCCTGGCTAAACCATTCTGACAACGAAGAAA
ACACGTTCGGAGCTACGGTCGCTCGGAGGACAACAACGAGTCATTTTCAC
GGGATGTTTGGTCTACGTATCTTACGATTTTACTTGTTCTCGTCTCGGAG
ACCTCATGACCCACAACATCTACGTACTTGCAGACGTTGATACTGCCATC
TCATCGCGCCCTCGCCTGCGTGTCACTCCATGAACCTCACTTTCTCTGCA
GCTCCTGACGGTGTGGTCGACGCTCTATTGGCTGAGCAGAGCGACTCGCT
GAAGTTGTTGCGCTCCGGAGGAACGATCAACAACTTCGACCTCCCAATGG
AATGGCTCCACACGGCGATCCCGCCAGCGCCTTTGCCTCCCTCTGCGGGC
GCGACCGCGGACGGAGTGGACAACACACCCTCTCGGGCGAACGGGGTGTC
AGGGCCCTCTAAGAGAAAGGCCTTAAACCCAGTGCGTCCTACGTCGCTAA
CACCACCCAGCGTTGGCGACATCGCATGCTTCAAGGCGGAGGAAGCTCCG
TTTGTGCTGGGGGAGGTGCTGAGCATAGCTGCAGACGCCTCGCCGGTGAA
CGTCGACATCCACTGGTATGGGCCTATCAACAATACCGTTAGGGCGGGAG
CGGGCAGCGCGACTATCGAGGACTATGCCGTGGCGCGTTTCAGCAAGGAT
TTCATCCTAACAAGCGGCGCGAAGCGCAGAACGCACGATGCCAGCGACGA
GCCTATCCCACGCATTATCGCATGCTGCAGCTCGCTAACTTCAACGGGTA
ACATCCCGGCGAGAATTTAA
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Coding sequence (CDS) from alignment at Scaffold_390:208219..209738-

>EsuBft4927_2a-0001 ID=EsuBft4927_2a-0001|Name=EsuBft4927_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1191bp|location=Sequence derived from alignment at Scaffold_390:208219..209738- (Ectocarpus subulatus male Bft15b)
ATGCCGAAAACCCTTAGCAGGACGCAGCGCACCCTTCATGCGACTCGCCG
NGCTCTACCTAACTTCGTTTCCCATGGTGGTGGAGCGGTCCTGCTCGCAA
TATCTTATTGGGGTGTTTCTTGCTTCGTGGTCCTGGTTGAGCTCCTCGCC
CTGACGACTCCTACTCAAACCTATAGAATCTCCGTGGGTACCCTCGGTCG
AAGCATCTTTACGAGGAGTCAACCTGGTGAGCTATTCCGGGAGTCGGACA
AGGAACTTCCGGTACACGTAGGGACTCTGACCAACCTCGGCAACTTCAAG
GGGGTCTACCTCGACGACAACAAGCTCAACCTTCGGAAGATCCGGAACAT
CACCACGTTTCGGGCCTTCCGAGTGGGTAAGGTAGCAGGGGAGGTTTCCG
TGTGGGCCAAGCGCTTCATGCACAGCGATGCCTGGCTTGGTCTGACAGCG
ACCGGCGGGGCCCAGGTCGACGCCAACCCACACCGTCTCTTCCGGTTCGC
TGCGCCGACTTTCGACATCGTGCCTCCTTTTGAGCTCAAGACGGTCGACC
CCACCGTGATCGCCCCCATCGAGAAGCGCTACATCGCGACGCGGCCCCGC
CTAGAGGCTGCTTACGCACTAGCTCCTGACGGTGTGGTCGACGCTCTATT
GGCTGAGCAGAGCGACTCGCTGAAGTTGTTGCGCTCCGGAGGAACGATCA
ACAACTTCGACCTCCCAATGGAATGGCTCCACACGGCGATCCCGCCAGCG
CCTTTGCCTCCCTCTGCGGGCGCGACCGCGGACGGAGTGGACAACACACC
CTCTCGGGCGAACGGGGTGTCAGGGCCCTCTAAGAGAAAGGCCTTAAACC
CAGTGCGTCCTACGTCGCTAACACCACCCAGCGTTGGCGACATCGCATGC
TTCAAGGCGGAGGAAGCTCCGTTTGTGCTGGGGGAGGTGCTGAGCATAGC
TGCAGACGCCTCGCCGGTGAACGTCGACATCCACTGGTATGGGCCTATCA
ACAATACCGTTAGGGCGGGAGCGGGCAGCGCGACTATCGAGGACTATGCC
GTGGCGCGTTTCAGCAAGGATTTCATCCTAACAAGCGGCGCGAAGCGCAG
AACGCACGATGCCAGCGACGAGCCTATCCCACGCATTATCGCATGCTGCA
GCTCGCTAACTTCAACGGGTAACATCCCGGCGAGAATTTAA
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