EsuBft4890_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4890_2a-0001
Unique NameEsuBft4890_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:1938..3614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4890_2
Protein domainsPTHR32134
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon4
Length1173
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4890_2aEsuBft4890_2aEctocarpus subulatus male Bft15bgeneScaffold_94 1938..3614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4890_2a-0001-exonEsuBft4890_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 1938..1974 +
EsuBft4890_2a-0001-exonagat-exon-50928Ectocarpus subulatus male Bft15bexonScaffold_94 2351..3083 +
EsuBft4890_2a-0001-exonagat-exon-50929Ectocarpus subulatus male Bft15bexonScaffold_94 3151..3360 +
EsuBft4890_2a-0001-exonagat-exon-50930Ectocarpus subulatus male Bft15bexonScaffold_94 3422..3614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4890_2a-0001-cdsEsuBft4890_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 1938..1974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4890_2a-0001EsuBft4890_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 1938..3614 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4890_2a-0001 ID=EsuBft4890_2a-0001|Name=EsuBft4890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1173bp|location=Sequence derived from alignment at Scaffold_94:1938..3614+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGAAGAGCCTGATTGTCTTCGTGGATTGTGGACGAAGCGAGTG
CCTGAGAGCGTTCATCGTGGCCTTGAACCAGACATGCAATGGACAAGAAA
AGCGTTGGTACGCGTCTACGCTGGAGCTTCAGCTTGTGTCGCTGGAGTTT
TGTGGGGCGTGCAGACGTGTCCCGACCTTGCACGTGCGTGTCGATCGACA
AACGCCTCGTAGCTTGTGGTCTCCCTGCAAATCGCACGCGACCACCAAGA
AACGCAGTCGTGAGGCATGCGTCTCGAATCGTGTCCCGGCTGTGCAGGCT
TCGGGTTTGACGTGGGCACTTGACATGGAGGTTCTGCTGCAGACTTCTGC
CGTGGAATTGCGGTCAAGATCAAAATATCGGCGTGTGAGCGGAAATTCAT
CTACTGCAAGCCTAGGATCGATGTTTTGGCTTCAGATGATGCTCAAACGG
CTGGTATTTGATTCAGATATGCCCGCGAGCACTGCGTCCTGGCCGGCCTC
CCTGCCGCAGCTATTGTTTGGAGATCGCTTCGACCAGCCCATCACCGAGG
TCGTGTGGCCCGTCGCCCTGGAGGAGCTCTCGTTTGGGGTTGAATTCAAC
CAGCCCATCGCCGGAGTCGTGTGGCCGGCCTCCGTGCAGCAGCTATCGTT
TGGACGTTACTTCAACCAGCCCATCTCCGAGGTCGTGTGGCCGGCCTCCT
TGAAGAAGGTGTCGTTTGATGACGAATTCAACAAGCCCATCACCGAAAAC
GAGTGGTCGGCCTCCCTGCACAAGCAGCTATCGTTAGGTGATTCATTCAA
CCGCCCCATCGCCGAGGTCGTGTGGCCGCCCTCAGTGCAGCAGCTATCGT
TTGGTTTGATGTTCAACGAGCCTATCGCCGAGGTGGTGTGGCCGGCCTCC
TTGAAGAATTTGTTGTTTGATGGCGAATTCAACCAGCCTATTGGCGAAGT
TGTGTGGCCGGCCTCTCTGCAGCAGCTATCCTATCAATTAATTGGACGCT
ACTTCAACCAGCCCATCGCCGAGGTCATGTGGCCGGCCTCCGTTCAGCAG
CTACCGTTTGGGGTTAAGTTCGACCAGCCCATCGTCAAAGTCGCGTGGCC
GGCCTCCTTGAAGAAGGTATCGTTTCATGGCAAATTCCCAAGCTCGGTAG
AGCTTGGGTCTCTATCGACCTAA
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protein sequence of EsuBft4890_2a-0001

>EsuBft4890_2 ID=EsuBft4890_2|Name=EsuBft4890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=390bp
MVAKSLIVFVDCGRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEF
CGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQA
SGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKR
LVFDSDMPASTASWPASLPQLLFGDRFDQPITEVVWPVALEELSFGVEFN
QPIAGVVWPASVQQLSFGRYFNQPISEVVWPASLKKVSFDDEFNKPITEN
EWSASLHKQLSLGDSFNRPIAEVVWPPSVQQLSFGLMFNEPIAEVVWPAS
LKNLLFDGEFNQPIGEVVWPASLQQLSYQLIGRYFNQPIAEVMWPASVQQ
LPFGVKFDQPIVKVAWPASLKKVSFHGKFPSSVELGSLST
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mRNA from alignment at Scaffold_94:1938..3614+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4890_2a-0001 ID=EsuBft4890_2a-0001|Name=EsuBft4890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1677bp|location=Sequence derived from alignment at Scaffold_94:1938..3614+ (Ectocarpus subulatus male Bft15b)
ATGGTGGCGAAGAGCCTGATTGTCTTCGTGGATTGTGGTTCAAGAATGGC
CCCGGTTGCATTGATCAGGCTCCCTTGTCAATGTTGTACCCGAAGAACCA
TGTGGTCTGTTACTTCATGAATCTTGCAGGGGCCTACCAAAATAATCGTA
CTTTTGCCCCCAACTCAACCAGTATTCGCAAGAGGGGTGTCGAAGATGAA
CACAAGACATCAATAGGTGATCGATAACGGGACACCGCCGCCGTGTTTTT
GTCCACCAAAAGCTGTTGGCAATTCATTGTGGGCCGTGATCTTGCTACGA
TCGAGTACCTTGTTCCCTGTGTCAAAATCAAGTAGCCGCGCATCAAGAAC
TGTCCCAAGGCCCACAACCCACTTTGTTGACGTGTTTACGTGGGTACCTG
CCATCCCTATCAGGACGAAGCGAGTGCCTGAGAGCGTTCATCGTGGCCTT
GAACCAGACATGCAATGGACAAGAAAAGCGTTGGTACGCGTCTACGCTGG
AGCTTCAGCTTGTGTCGCTGGAGTTTTGTGGGGCGTGCAGACGTGTCCCG
ACCTTGCACGTGCGTGTCGATCGACAAACGCCTCGTAGCTTGTGGTCTCC
CTGCAAATCGCACGCGACCACCAAGAAACGCAGTCGTGAGGCATGCGTCT
CGAATCGTGTCCCGGCTGTGCAGGCTTCGGGTTTGACGTGGGCACTTGAC
ATGGAGGTTCTGCTGCAGACTTCTGCCGTGGAATTGCGGTCAAGATCAAA
ATATCGGCGTGTGAGCGGAAATTCATCTACTGCAAGCCTAGGATCGATGT
TTTGGCTTCAGATGATGCTCAAACGGCTGGTATTTGATTCAGATATGCCC
GCGAGCACTGCGTCCTGGCCGGCCTCCCTGCCGCAGCTATTGTTTGGAGA
TCGCTTCGACCAGCCCATCACCGAGGTCGTGTGGCCCGTCGCCCTGGAGG
AGCTCTCGTTTGGGGTTGAATTCAACCAGCCCATCGCCGGAGTCGTGTGG
CCGGCCTCCGTGCAGCAGCTATCGTTTGGACGTTACTTCAACCAGCCCAT
CTCCGAGGTCGTGTGGCCGGCCTCCTTGAAGAAGGTGTCGTTTGATGACG
AATTCAACAAGCCCATCACCGAAAACGAGTGGTCGGCCTCCCTGCAGTAG
CTATCGTTTGGATGTTACTTCAACCAGCCCATCGCAAAAGTGGCGTGGCC
GGCCTCCCTACAGCAAGCAGCTATCGTTAGGTGATTCATTCAACCGCCCC
ATCGCCGAGGTCGTGTGGCCGCCCTCAGTGCAGCAGCTATCGTTTGGTTT
GATGTTCAACGAGCCTATCGCCGAGGTGGTGTGGCCGGCCTCCTTGAAGA
ATTTGTTGTTTGATGGCGAATTCAACCAGCCTATTGGCGAAGTTGTGTGG
CCGGCCTCTCTGCAGCAGCTATCGTTTGGATGTTACTTCAACCAGCCCAT
ACCTAAAGTCATGTGGCCGGCCTCCATACAACAGCTATCAATTAATTGGA
CGCTACTTCAACCAGCCCATCGCCGAGGTCATGTGGCCGGCCTCCGTTCA
GCAGCTACCGTTTGGGGTTAAGTTCGACCAGCCCATCGTCAAAGTCGCGT
GGCCGGCCTCCTTGAAGAAGGTATCGTTTCATGGCAAATTCCCAAGCTCG
GTAGAGCTTGGGTCTCTATCGACCTAA
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Coding sequence (CDS) from alignment at Scaffold_94:1938..3614+

>EsuBft4890_2a-0001 ID=EsuBft4890_2a-0001|Name=EsuBft4890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1173bp|location=Sequence derived from alignment at Scaffold_94:1938..3614+ (Ectocarpus subulatus male Bft15b)
ATGGTGGCGAAGAGCCTGATTGTCTTCGTGGATTGTGGACGAAGCGAGTG
CCTGAGAGCGTTCATCGTGGCCTTGAACCAGACATGCAATGGACAAGAAA
AGCGTTGGTACGCGTCTACGCTGGAGCTTCAGCTTGTGTCGCTGGAGTTT
TGTGGGGCGTGCAGACGTGTCCCGACCTTGCACGTGCGTGTCGATCGACA
AACGCCTCGTAGCTTGTGGTCTCCCTGCAAATCGCACGCGACCACCAAGA
AACGCAGTCGTGAGGCATGCGTCTCGAATCGTGTCCCGGCTGTGCAGGCT
TCGGGTTTGACGTGGGCACTTGACATGGAGGTTCTGCTGCAGACTTCTGC
CGTGGAATTGCGGTCAAGATCAAAATATCGGCGTGTGAGCGGAAATTCAT
CTACTGCAAGCCTAGGATCGATGTTTTGGCTTCAGATGATGCTCAAACGG
CTGGTATTTGATTCAGATATGCCCGCGAGCACTGCGTCCTGGCCGGCCTC
CCTGCCGCAGCTATTGTTTGGAGATCGCTTCGACCAGCCCATCACCGAGG
TCGTGTGGCCCGTCGCCCTGGAGGAGCTCTCGTTTGGGGTTGAATTCAAC
CAGCCCATCGCCGGAGTCGTGTGGCCGGCCTCCGTGCAGCAGCTATCGTT
TGGACGTTACTTCAACCAGCCCATCTCCGAGGTCGTGTGGCCGGCCTCCT
TGAAGAAGGTGTCGTTTGATGACGAATTCAACAAGCCCATCACCGAAAAC
GAGTGGTCGGCCTCCCTGCACAAGCAGCTATCGTTAGGTGATTCATTCAA
CCGCCCCATCGCCGAGGTCGTGTGGCCGCCCTCAGTGCAGCAGCTATCGT
TTGGTTTGATGTTCAACGAGCCTATCGCCGAGGTGGTGTGGCCGGCCTCC
TTGAAGAATTTGTTGTTTGATGGCGAATTCAACCAGCCTATTGGCGAAGT
TGTGTGGCCGGCCTCTCTGCAGCAGCTATCCTATCAATTAATTGGACGCT
ACTTCAACCAGCCCATCGCCGAGGTCATGTGGCCGGCCTCCGTTCAGCAG
CTACCGTTTGGGGTTAAGTTCGACCAGCCCATCGTCAAAGTCGCGTGGCC
GGCCTCCTTGAAGAAGGTATCGTTTCATGGCAAATTCCCAAGCTCGGTAG
AGCTTGGGTCTCTATCGACCTAA
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