Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft4885_2 |
| Protein domains | SignalP-TM |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 140 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4885_2a-0001 ID=EsuBft4885_2a-0001|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1400bp|location=Sequence derived from alignment at Scaffold_30:144..1543+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCAGGAGCAGGAGGAGCGGGTCATCGGGCTCGCCCAACATTCAGGC
CACAGGCGCCGTGGCCGCAGCCCCCGCCGTGCCCGAACACAGCATCCGCC
GCCGCCATGCCCCCCGCAGCTCCCGCAGCCCCCGCCATGCCCGACGCAGC
CGCAGCCACACCGCCCGCAGCCGCCGCCCCGCCCGCCCCGCCCGCCCCGC
CGTCGCCCCCGGCCACGGCCCCGCCATGCTCGCCGCAGCGGCATCTACGG
CACCTAACACCCGCCCCAGCCACGTCGGAACCCCAGGGCCTCCTGCCCCC
GCGAACACCGGGCCTGCACAGCCCGTGCCTAACGCTCTCCTTGCGCCCGA
GCCTGAACCGCGGGTGGGGCGCGGCCGCTGGGCCATGCAACGCCTGGGCC
GTGGGATATCCTTGCTCAGCATCGTGGCCAAAGTGAAAGAAGCAGCTTCT
GACGTGGACGTGGACGAAGTGGTTTCTAGTGTTGTCGAGTTCTTTGCCGA
CGTGGCGGGGTAAGCAAGTCCGTTCGTTCGTTCGTGCCATCGCCGGCGGT
GCTATGGCGTGAGTGATGATATGGTGTTTGTGCTTGTCTGATCGTATATC
GAAACATGGTGTGCATTGGATGGGTGCGTCGGTGGGTGACGATGTAGGCT
GGCCAGGGCAGGTACCACCGGCGTGCCGTGGTGGTTGATCTTTCGTTTTT
TGGTCGTGCGCGCGCGTTTAGGTGGGTGGACGTACGTGATAAATCGCGTG
CTTTCTGCTCTCCGCATGGTGTGGTTAACATTTCCCAGGAGTATAGTTTG
CTGCGTGCTGCTCGAGCGGGTGTGGGAAACGAGCACATCATTCTTTCATG
GCCGCGCTTTCTTGGTACATTTATTGTCTTTTTTTGGGAGTGGGGTGGGT
GGGTGGGTAGGCGTACTGTTACGTATTTCAAACCAGCGGGGATGGGTTCG
TTCGACGCGGCGCTTTCCCCTCACGCACACGCCTGGAAATTCGGGCGAGT
TTCCAGGGGCACCCTGATGGCGAGCATCTGCACCCCGGCGCTTTCCATCG
GCCACACCGTAACACACAAGCGTGTTCCCGTGACAGGGTCTCGTGGGATG
CGAGGGCGCGCCGTCGACGATATATATTGGTCGTCGACGGCAAACAGAAG
ACCGCTTGTTTGTTGACAAACGACATATCTTCGCGCCTAGAATTGTGAAT
GTGATACAAGGAGGAGCTCAGGAGCGGTGCTTCCCTTAGAGGACGTTTCT
GGCCAGCACGGCGTGACACCCCATGGCTGTGAATGATATGCTGCTGTCGA
AAGGGATCTTATCTCACCTCACTCAGTGGCTGGCGTGGGTGTGTCCGTAT
TGTCTGCTGTTGTGTGCTTATGGGGTGGATGAAGGGTGTACTCATAGTCG back to topprotein sequence of EsuBft4885_2a-0001 >EsuBft4885_2 ID=EsuBft4885_2|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=170bp
MSRSRRSGSSGSPNIQATGAVAAAPAVPEHSIRRRHAPRSSRSPRHARRS
RSHTARSRRPARPARPAVAPGHGPAMLAAAASTAPNTRPSHVGTPGPPAP
ANTGPAQPVPNALLAPEPEPRVGRGRWAMQRLGRGISLLSIVAKVKEAAS
DVDVDEVVSSVVEFFADVAG back to topmRNA from alignment at Scaffold_30:144..1543+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4885_2a-0001 ID=EsuBft4885_2a-0001|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1400bp|location=Sequence derived from alignment at Scaffold_30:144..1543+ (Ectocarpus subulatus male Bft15b)
ATGAGCAGGAGCAGGAGGAGCGGGTCATCGGGCTCGCCCAACATTCAGGC
CACAGGCGCCGTGGCCGCAGCCCCCGCCGTGCCCGAACACAGCATCCGCC
GCCGCCATGCCCCCCGCAGCTCCCGCAGCCCCCGCCATGCCCGACGCAGC
CGCAGCCACACCGCCCGCAGCCGCCGCCCCGCCCGCCCCGCCCGCCCCGC
CGTCGCCCCCGGCCACGGCCCCGCCATGCTCGCCGCAGCGGCATCTACGG
CACCTAACACCCGCCCCAGCCACGTCGGAACCCCAGGGCCTCCTGCCCCC
GCGAACACCGGGCCTGCACAGCCCGTGCCTAACGCTCTCCTTGCGCCCGA
GCCTGAACCGCGGGTGGGGCGCGGCCGCTGGGCCATGCAACGCCTGGGCC
GTGGGATATCCTTGCTCAGCATCGTGGCCAAAGTGAAAGAAGCAGCTTCT
GACGTGGACGTGGACGAAGTGGTTTCTAGTGTTGTCGAGTTCTTTGCCGA
CGTGGCGGGGTAAGCAAGTCCGTTCGTTCGTTCGTGCCATCGCCGGCGGT
GCTATGGCGTGAGTGATGATATGGTGTTTGTGCTTGTCTGATCGTATATC
GAAACATGGTGTGCATTGGATGGGTGCGTCGGTGGGTGACGATGTAGGCT
GGCCAGGGCAGGTACCACCGGCGTGCCGTGGTGGTTGATCTTTCGTTTTT
TGGTCGTGCGCGCGCGTTTAGGTGGGTGGACGTACGTGATAAATCGCGTG
CTTTCTGCTCTCCGCATGGTGTGGTTAACATTTCCCAGGAGTATAGTTTG
CTGCGTGCTGCTCGAGCGGGTGTGGGAAACGAGCACATCATTCTTTCATG
GCCGCGCTTTCTTGGTACATTTATTGTCTTTTTTTGGGAGTGGGGTGGGT
GGGTGGGTAGGCGTACTGTTACGTATTTCAAACCAGCGGGGATGGGTTCG
TTCGACGCGGCGCTTTCCCCTCACGCACACGCCTGGAAATTCGGGCGAGT
TTCCAGGGGCACCCTGATGGCGAGCATCTGCACCCCGGCGCTTTCCATCG
GCCACACCGTAACACACAAGCGTGTTCCCGTGACAGGGTCTCGTGGGATG
CGAGGGCGCGCCGTCGACGATATATATTGGTCGTCGACGGCAAACAGAAG
ACCGCTTGTTTGTTGACAAACGACATATCTTCGCGCCTAGAATTGTGAAT
GTGATACAAGGAGGAGCTCAGGAGCGGTGCTTCCCTTAGAGGACGTTTCT
GGCCAGCACGGCGTGACACCCCATGGCTGTGAATGATATGCTGCTGTCGA
AAGGGATCTTATCTCACCTCACTCAGTGGCTGGCGTGGGTGTGTCCGTAT
TGTCTGCTGTTGTGTGCTTATGGGGTGGATGAAGGGTGTACTCATAGTCG
back to topCoding sequence (CDS) from alignment at Scaffold_30:144..1543+ >EsuBft4885_2a-0001 ID=EsuBft4885_2a-0001|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=513bp|location=Sequence derived from alignment at Scaffold_30:144..1543+ (Ectocarpus subulatus male Bft15b)
ATGAGCAGGAGCAGGAGGAGCGGGTCATCGGGCTCGCCCAACATTCAGGC
CACAGGCGCCGTGGCCGCAGCCCCCGCCGTGCCCGAACACAGCATCCGCC
GCCGCCATGCCCCCCGCAGCTCCCGCAGCCCCCGCCATGCCCGACGCAGC
CGCAGCCACACCGCCCGCAGCCGCCGCCCCGCCCGCCCCGCCCGCCCCGC
CGTCGCCCCCGGCCACGGCCCCGCCATGCTCGCCGCAGCGGCATCTACGG
CACCTAACACCCGCCCCAGCCACGTCGGAACCCCAGGGCCTCCTGCCCCC
GCGAACACCGGGCCTGCACAGCCCGTGCCTAACGCTCTCCTTGCGCCCGA
GCCTGAACCGCGGGTGGGGCGCGGCCGCTGGGCCATGCAACGCCTGGGCC
GTGGGATATCCTTGCTCAGCATCGTGGCCAAAGTGAAAGAAGCAGCTTCT
GACGTGGACGTGGACGAAGTGGTTTCTAGTGTTGTCGAGTTCTTTGCCGA
CGTGGCGGGGTAA back to top
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