EsuBft4885_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4885_2a-0001
Unique Name	EsuBft4885_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:144..1543 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft4885_2
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	140
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4885_2a	EsuBft4885_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 144..1543 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4885_2a-0001-exon	EsuBft4885_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 144..1543 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4885_2a-0001-cds	EsuBft4885_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 144..656 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4885_2a-0001-exon	agat-three_prime_utr-16990	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 657..1543 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4885_2a-0001	EsuBft4885_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 144..656 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:144..1543+
coding sequence from alignment at Scaffold_30:144..1543+

spliced messenger RNA

>EsuBft4885_2a-0001 ID=EsuBft4885_2a-0001|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1400bp|location=Sequence derived from alignment at Scaffold_30:144..1543+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGGAGCAGGAGGAGCGGGTCATCGGGCTCGCCCAACATTCAGGC
CACAGGCGCCGTGGCCGCAGCCCCCGCCGTGCCCGAACACAGCATCCGCC
GCCGCCATGCCCCCCGCAGCTCCCGCAGCCCCCGCCATGCCCGACGCAGC
CGCAGCCACACCGCCCGCAGCCGCCGCCCCGCCCGCCCCGCCCGCCCCGC
CGTCGCCCCCGGCCACGGCCCCGCCATGCTCGCCGCAGCGGCATCTACGG
CACCTAACACCCGCCCCAGCCACGTCGGAACCCCAGGGCCTCCTGCCCCC
GCGAACACCGGGCCTGCACAGCCCGTGCCTAACGCTCTCCTTGCGCCCGA
GCCTGAACCGCGGGTGGGGCGCGGCCGCTGGGCCATGCAACGCCTGGGCC
GTGGGATATCCTTGCTCAGCATCGTGGCCAAAGTGAAAGAAGCAGCTTCT
GACGTGGACGTGGACGAAGTGGTTTCTAGTGTTGTCGAGTTCTTTGCCGA
CGTGGCGGGGTAAGCAAGTCCGTTCGTTCGTTCGTGCCATCGCCGGCGGT
GCTATGGCGTGAGTGATGATATGGTGTTTGTGCTTGTCTGATCGTATATC
GAAACATGGTGTGCATTGGATGGGTGCGTCGGTGGGTGACGATGTAGGCT
GGCCAGGGCAGGTACCACCGGCGTGCCGTGGTGGTTGATCTTTCGTTTTT
TGGTCGTGCGCGCGCGTTTAGGTGGGTGGACGTACGTGATAAATCGCGTG
CTTTCTGCTCTCCGCATGGTGTGGTTAACATTTCCCAGGAGTATAGTTTG
CTGCGTGCTGCTCGAGCGGGTGTGGGAAACGAGCACATCATTCTTTCATG
GCCGCGCTTTCTTGGTACATTTATTGTCTTTTTTTGGGAGTGGGGTGGGT
GGGTGGGTAGGCGTACTGTTACGTATTTCAAACCAGCGGGGATGGGTTCG
TTCGACGCGGCGCTTTCCCCTCACGCACACGCCTGGAAATTCGGGCGAGT
TTCCAGGGGCACCCTGATGGCGAGCATCTGCACCCCGGCGCTTTCCATCG
GCCACACCGTAACACACAAGCGTGTTCCCGTGACAGGGTCTCGTGGGATG
CGAGGGCGCGCCGTCGACGATATATATTGGTCGTCGACGGCAAACAGAAG
ACCGCTTGTTTGTTGACAAACGACATATCTTCGCGCCTAGAATTGTGAAT
GTGATACAAGGAGGAGCTCAGGAGCGGTGCTTCCCTTAGAGGACGTTTCT
GGCCAGCACGGCGTGACACCCCATGGCTGTGAATGATATGCTGCTGTCGA
AAGGGATCTTATCTCACCTCACTCAGTGGCTGGCGTGGGTGTGTCCGTAT
TGTCTGCTGTTGTGTGCTTATGGGGTGGATGAAGGGTGTACTCATAGTCG

protein sequence of EsuBft4885_2a-0001

>EsuBft4885_2 ID=EsuBft4885_2|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=170bp
MSRSRRSGSSGSPNIQATGAVAAAPAVPEHSIRRRHAPRSSRSPRHARRS
RSHTARSRRPARPARPAVAPGHGPAMLAAAASTAPNTRPSHVGTPGPPAP
ANTGPAQPVPNALLAPEPEPRVGRGRWAMQRLGRGISLLSIVAKVKEAAS
DVDVDEVVSSVVEFFADVAG

mRNA from alignment at Scaffold_30:144..1543+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4885_2a-0001 ID=EsuBft4885_2a-0001|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1400bp|location=Sequence derived from alignment at Scaffold_30:144..1543+ (Ectocarpus subulatus male Bft15b)
ATGAGCAGGAGCAGGAGGAGCGGGTCATCGGGCTCGCCCAACATTCAGGC
CACAGGCGCCGTGGCCGCAGCCCCCGCCGTGCCCGAACACAGCATCCGCC
GCCGCCATGCCCCCCGCAGCTCCCGCAGCCCCCGCCATGCCCGACGCAGC
CGCAGCCACACCGCCCGCAGCCGCCGCCCCGCCCGCCCCGCCCGCCCCGC
CGTCGCCCCCGGCCACGGCCCCGCCATGCTCGCCGCAGCGGCATCTACGG
CACCTAACACCCGCCCCAGCCACGTCGGAACCCCAGGGCCTCCTGCCCCC
GCGAACACCGGGCCTGCACAGCCCGTGCCTAACGCTCTCCTTGCGCCCGA
GCCTGAACCGCGGGTGGGGCGCGGCCGCTGGGCCATGCAACGCCTGGGCC
GTGGGATATCCTTGCTCAGCATCGTGGCCAAAGTGAAAGAAGCAGCTTCT
GACGTGGACGTGGACGAAGTGGTTTCTAGTGTTGTCGAGTTCTTTGCCGA
CGTGGCGGGGTAAGCAAGTCCGTTCGTTCGTTCGTGCCATCGCCGGCGGT
GCTATGGCGTGAGTGATGATATGGTGTTTGTGCTTGTCTGATCGTATATC
GAAACATGGTGTGCATTGGATGGGTGCGTCGGTGGGTGACGATGTAGGCT
GGCCAGGGCAGGTACCACCGGCGTGCCGTGGTGGTTGATCTTTCGTTTTT
TGGTCGTGCGCGCGCGTTTAGGTGGGTGGACGTACGTGATAAATCGCGTG
CTTTCTGCTCTCCGCATGGTGTGGTTAACATTTCCCAGGAGTATAGTTTG
CTGCGTGCTGCTCGAGCGGGTGTGGGAAACGAGCACATCATTCTTTCATG
GCCGCGCTTTCTTGGTACATTTATTGTCTTTTTTTGGGAGTGGGGTGGGT
GGGTGGGTAGGCGTACTGTTACGTATTTCAAACCAGCGGGGATGGGTTCG
TTCGACGCGGCGCTTTCCCCTCACGCACACGCCTGGAAATTCGGGCGAGT
TTCCAGGGGCACCCTGATGGCGAGCATCTGCACCCCGGCGCTTTCCATCG
GCCACACCGTAACACACAAGCGTGTTCCCGTGACAGGGTCTCGTGGGATG
CGAGGGCGCGCCGTCGACGATATATATTGGTCGTCGACGGCAAACAGAAG
ACCGCTTGTTTGTTGACAAACGACATATCTTCGCGCCTAGAATTGTGAAT
GTGATACAAGGAGGAGCTCAGGAGCGGTGCTTCCCTTAGAGGACGTTTCT
GGCCAGCACGGCGTGACACCCCATGGCTGTGAATGATATGCTGCTGTCGA
AAGGGATCTTATCTCACCTCACTCAGTGGCTGGCGTGGGTGTGTCCGTAT
TGTCTGCTGTTGTGTGCTTATGGGGTGGATGAAGGGTGTACTCATAGTCG

Coding sequence (CDS) from alignment at Scaffold_30:144..1543+

>EsuBft4885_2a-0001 ID=EsuBft4885_2a-0001|Name=EsuBft4885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=513bp|location=Sequence derived from alignment at Scaffold_30:144..1543+ (Ectocarpus subulatus male Bft15b)
ATGAGCAGGAGCAGGAGGAGCGGGTCATCGGGCTCGCCCAACATTCAGGC
CACAGGCGCCGTGGCCGCAGCCCCCGCCGTGCCCGAACACAGCATCCGCC
GCCGCCATGCCCCCCGCAGCTCCCGCAGCCCCCGCCATGCCCGACGCAGC
CGCAGCCACACCGCCCGCAGCCGCCGCCCCGCCCGCCCCGCCCGCCCCGC
CGTCGCCCCCGGCCACGGCCCCGCCATGCTCGCCGCAGCGGCATCTACGG
CACCTAACACCCGCCCCAGCCACGTCGGAACCCCAGGGCCTCCTGCCCCC
GCGAACACCGGGCCTGCACAGCCCGTGCCTAACGCTCTCCTTGCGCCCGA
GCCTGAACCGCGGGTGGGGCGCGGCCGCTGGGCCATGCAACGCCTGGGCC
GTGGGATATCCTTGCTCAGCATCGTGGCCAAAGTGAAAGAAGCAGCTTCT
GACGTGGACGTGGACGAAGTGGTTTCTAGTGTTGTCGAGTTCTTTGCCGA
CGTGGCGGGGTAA