EsuBft4848_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4848_3a-0001
Unique NameEsuBft4848_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:728239..728739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFK2
ProteomeIdEsuBft4848_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length50
Hectar predicted targeting categoryother localisation
Evalue7.34e-26
EggNOG OGs2E19U@1|root,2S8MQ@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4848_3aEsuBft4848_3aEctocarpus subulatus male Bft15bgeneScaffold_499 728239..728739 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4848_3a-0001-exonEsuBft4848_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 728239..728739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4848_3a-0001-cdsEsuBft4848_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 728239..728568 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4848_3a-0001-exonagat-five_prime_utr-10748Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 728569..728739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4848_3a-0001EsuBft4848_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 728239..728568 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4848_3a-0001 ID=EsuBft4848_3a-0001|Name=EsuBft4848_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=501bp|location=Sequence derived from alignment at Scaffold_499:728239..728739- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTTACTTCCGTGCTGCTTATTCAAGCTACAAAGAAAAGGTGAGTCTAT
TCTGTTCCTCTCCTCACTTTCGGAGACTGGGTTGTTGATGCCGCCGCAGT
GATGTGGCATCGTTCATCGTTCGCACATCGTCAAGATTGTTCGCGCTCGA
AGGCATTGTTGTGGTTCTTTGATGCGATTATCCTTTTGTGATGCTGGTGT
GAATTCACCACTTCAGTCGCGAGAGACGACCAACAGAAGTCGATGGTACG
TGTCCTCGTCGAACAAATGTTTTGTCTTTGCGAACGTCCCGCAAACCTCC
GCGTACCCAGGCCCCCTAGACTACACGATGGCGCAGACGGACCGCAAGGC
GCTGGTTGCCCTATACAACGCGACCGGTCGGGCTAAGTGGGAGTACACGC
GAAACTGGAACACTAGCGCCGCCCTCTCGCAATGGCACGGAGTCGAAGTC
AACTGCCAGGGCCGCGTGGTGAAGTTATCTCTGGGTGGCAACAACTTGTG
A
back to top

protein sequence of EsuBft4848_3a-0001

>EsuBft4848_3 ID=EsuBft4848_3|Name=EsuBft4848_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MRLSFCDAGVNSPLQSRETTNRSRWYVSSSNKCFVFANVPQTSAYPGPLD
YTMAQTDRKALVALYNATGRAKWEYTRNWNTSAALSQWHGVEVNCQGRVV
KLSLGGNNL
back to top

mRNA from alignment at Scaffold_499:728239..728739-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4848_3a-0001 ID=EsuBft4848_3a-0001|Name=EsuBft4848_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=501bp|location=Sequence derived from alignment at Scaffold_499:728239..728739- (Ectocarpus subulatus male Bft15b)
CTCTTACTTCCGTGCTGCTTATTCAAGCTACAAAGAAAAGGTGAGTCTAT
TCTGTTCCTCTCCTCACTTTCGGAGACTGGGTTGTTGATGCCGCCGCAGT
GATGTGGCATCGTTCATCGTTCGCACATCGTCAAGATTGTTCGCGCTCGA
AGGCATTGTTGTGGTTCTTTGATGCGATTATCCTTTTGTGATGCTGGTGT
GAATTCACCACTTCAGTCGCGAGAGACGACCAACAGAAGTCGATGGTACG
TGTCCTCGTCGAACAAATGTTTTGTCTTTGCGAACGTCCCGCAAACCTCC
GCGTACCCAGGCCCCCTAGACTACACGATGGCGCAGACGGACCGCAAGGC
GCTGGTTGCCCTATACAACGCGACCGGTCGGGCTAAGTGGGAGTACACGC
GAAACTGGAACACTAGCGCCGCCCTCTCGCAATGGCACGGAGTCGAAGTC
AACTGCCAGGGCCGCGTGGTGAAGTTATCTCTGGGTGGCAACAACTTGTG
A
back to top

Coding sequence (CDS) from alignment at Scaffold_499:728239..728739-

>EsuBft4848_3a-0001 ID=EsuBft4848_3a-0001|Name=EsuBft4848_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_499:728239..728739- (Ectocarpus subulatus male Bft15b)
ATGCGATTATCCTTTTGTGATGCTGGTGTGAATTCACCACTTCAGTCGCG
AGAGACGACCAACAGAAGTCGATGGTACGTGTCCTCGTCGAACAAATGTT
TTGTCTTTGCGAACGTCCCGCAAACCTCCGCGTACCCAGGCCCCCTAGAC
TACACGATGGCGCAGACGGACCGCAAGGCGCTGGTTGCCCTATACAACGC
GACCGGTCGGGCTAAGTGGGAGTACACGCGAAACTGGAACACTAGCGCCG
CCCTCTCGCAATGGCACGGAGTCGAAGTCAACTGCCAGGGCCGCGTGGTG
AAGTTATCTCTGGGTGGCAACAACTTGTGA
back to top