EsuBft4848_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4848_2a-0001
Unique Name	EsuBft4848_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:728784..732701 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft4848_2
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	363
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4848_2a	EsuBft4848_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 728784..732701 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4848_2a-0001	EsuBft4848_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 732464..732701 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4848_2a-0001-exon	EsuBft4848_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 728784..730343 -
EsuBft4848_2a-0001-exon	agat-exon-32655	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 730521..732582 -
EsuBft4848_2a-0001-exon	agat-exon-32654	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 732692..732701 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4848_2a-0001-exon	agat-three_prime_utr-16913	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 728784..730343 -
EsuBft4848_2a-0001-exon	agat-three_prime_utr-16914	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 730521..732463 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4848_2a-0001-cds	EsuBft4848_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 732464..732582 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:728784..732701-
coding sequence from alignment at Scaffold_499:728784..732701-

spliced messenger RNA

>EsuBft4848_2a-0001 ID=EsuBft4848_2a-0001|Name=EsuBft4848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3632bp|location=Sequence derived from alignment at Scaffold_499:728784..732701- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGTGGCCCGTCGCGCTCGAGGATGTCTCCTTCTTCTGGCGTCT
TTCTTTTGCGTTCTTGCTTGAAATTTCGGGCTGTTGGGGCCGAAGGGTCG
GATTGACCCCCGGAAGAGCCGGCGGGTAGCTCCGTCACAAAAGGGTTAAA
GCACCAGCATCCCAGGGTCTCATTTAAGGTGTATAGGCAGACTTGCCAAT
GTATAGGCAGACTTGCCAGAGGTTCCACCTCATAACAAGTTTACCGCTCA
TTATCCCCGCACATGGCATGCCACGCGATCATGACCATGAAAACATTTTA
GTATCTTAACTGTCACCATGATAGCCCAGTACCAACCATTTTTTGTTCTA
GATACACTAGTGTGGACCACATTCATCACCCTGTCTGAGGACTCTGTGTT
CCTCAACACGCGTGGTACGATGATCAAATCTTGGTGATGGTGTTGTGCAA
ACTAGGTTAATTCCGATACATGTGTCTCCATGAGCCACTACTGTCTCGAG
ACACCAAAAGCACATCTTTATCACAGATGAACTTGTGGCGCATAGAGGGG
GGGGTGATGTGGAAGACTCCTGTCGGAAGCATAACCAACCAACCACTCGT
GCACACACAAAGTAGGAGGATACGATCCATCGGAGTAACTTGCCATCTGT
AGAGTGACAAGTCACACATCGTTGAGATCTGTCTCTTCCATCGTCTTTGA
CCACCCGCCGAGAGTGGAGGCGGAGAGTCTTCGATTCTCATTCCTCTGCC
TTCTGCTGGTCACCCTTTCTACCTCTCTCCTCGTTACATCTCAGGAAAGG
AAATAGCCATCCTTGGCAGTAGGGGAACACTGCAACGGCACCGGCTCCTG
TCTCTGACGGTAGCCTGTGTCCTCATACCAGTGTATCTGCGATTCACATC
TACCGGCGCAGCAGTGGATTCGTATTCAACGCGTAATTAGTACGAGGCTG
CTCTATCATGTCGGTCCGACTTTGACACCCATCAGCCTCCTTCCCAGTTG
GCTTTTCAGCAGAGAATCGCATGCTCGACCGTTTGTGCCGACCTGCGCAA
TCCCCTGACCTAGACATGAACAAAAATGTACTGTATGTTGGTGTTGTGCA
GAATCTCGGTACGTATTGTTGACGCGTGTGACACGAGTTGTTTGTTGCTG
AGATGGCGGTGACTCTCCTCCCCCACCCTTATGGAGGGTCTCGCATCGAT
TGGTCCTGATCGGAAGACACGCCACCGACAAGTTGTTAAGCTAGACCACC
AGGTGGGGTTGTTCTGTGTGAATCATTGTTACTCGGCGGAGTCAAAAGGT
TCTCGATGCGCACATCCGCCTTACAACGTCGTCCCATGGTCACAACAGGC
GATGAAATACGCAAGCATTTTCGACACTTTTGTAATCGACCACATCCAAT
CCTTGACTGCAACATTGCATGATTCATGGACCGAGCAGCGCTGGCGGTCC
ACCTTTTCCTGCAGCGTTCACGGGGACAACATGAGGAGGGAGAGAAAACC
ACGTCCGGGCGAATGTTGACTCTCTTGACGAAGCTGGCAGGGAAGAGCCC
TCCCGGGGAGATGGGGGAGACGAGGAAAAATACCCGGAGGTGGCAGGCGA
GAGACGACACGGGATGGCGAGGAGGAAACTCGCACAGGAGACGGGTGTCG
AGAGTCAAGCATCCGAGAGGGAGTTATATCCTCCTGAGGAAGCTGGCAGC
GAGTTGGGGGCGCCCGCGGGGGCCAGGGGGGTGGCGAGGAGGAAACACCC
GACGAAGCTGGCCGAGACGACACTGCCTGACGAGGAGGATGGGCGGGAGC
CAGGGACGGGTTACGGTGAGGGAAAGGCGGTTGGGCTGGGTTGGGTTTTT
CGTGCGGCAGGAACTGTCGATCCCCCAGGAACGAATACAGAAAAACAGAT
ATATGTGCCGTGACAAAACCGTCCATTGGATACCCCGGCTGGTGGAGGAA
GGACGCATTTCGTGCTGGATGCACAACGCATTCCAACTACCGTCTTACAT
ATTTCTTCCTTCGGCAACTGCCGTACAAGACATGAGTAAGGCCAGGACCT
ATCCTGTTGCTGTGAGTGGGTGGCCTAGGGCGCGTAACAATTGTATTGGT
CTCGTACCACCACATCTTCAGATATTTACCGTTGTTTGCACAGGATATCA
CCCCCCCGCCTGGTGCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGT
AGGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGT
ACACCCCCCCCCCCCCGGTGTTTGCCTATCGGGATTGGGTTTTCGTCGCT
TGGCAACGACGTTGTAAAACAAGCCAATTCACTTCGTGAACTCGGCAACC
AGGTTACCGTTTTTTTTTTTTTCCTCCGTTTATTTTTTTTGGGCGGTAAC
CATAATGATGGTTGAGTAGATCATGTTGTGCGGGGTGAACCCTCACTCCG
CGCAAGGGGGATGATCGCACCACGTTGTGTTAAAATGGTCAAGCACCCTC
GAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAAAGCACCAGA
AAATAAATTAATTCATACGCAGCTGTCATCCGTACGCAAGGAAGTAAGCA
CAAGATGCCGAACACCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTC
GCCGAATATCTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCG
GTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAAT
GGTCTAACGACTACGGCATGCACGACTATGAGTACAACCCCCCCTGAACC
AAACTTCAAAGCCCTGTGAGAAGCACTCCACAGCAACAAAGGAAGCGTGA
TAGCGTCGAAAATGGTGGGGATGGAAACGGGTCGTCGAGAGCTTTCCGAA
GACCAACAACATCGTTTTTTGTATACTCCAGCCTTTTCGTCGTGGAGCAC
TCGAGCTGTGAACATCGACAACATCGATACAGGGGGGATGTTATCTGGTG
TCAAGTACAGGTACACGCATGGCACGGCATGTTGGTGCCACACACGCTCC
GAACTGCTGTGCATACCATACATCGCTGCGACAGCACTACTCTCAGCTCC
AGTAGTCAAGCGTGAACTTCCATCGAGAAAGCTCCCACCTTGCAGAGAGG
GGCAGAGGCGACCAACGTGATCTCAAAGGCGGACTGTTTTCGTGCAGCGC
GCCGAGCGCAACGGCCAAGGTCAACTATTACGTGTCTCTTGAAGGGCACT
TGAGATGGCGAGACATTTTGTCGTGAAACCCTTGGACACTTGCGTCCCAA
ACGACTGCCAGTGGGACTCACACACCTGTTCCACCGTGAGCTGACCTCCT
TAGTTGGGATTGCGTCCGGCCTAGCTGAGCTTTCCGGCTGTCCGTGATCG
TGTCACCAGGTACACTGGTACTGGGACTGTCGGCCGTGACCGATCTACAT
ATCCCCCCTCTTTTCATGGAGGCGTCCACACGCCGTATAAAAGCGGCGGG
ACGTACAGATTGGCCTACAGATGCATGTCACATCGCGCACTGTTCAATGA
GCAGTAGCATCTGCTTATAGCTCAGCAAAGTGAACATTTACCGTGCTGTA
GCCCAGCCACCGTCAGGAGAGGATCCACACAA

protein sequence of EsuBft4848_2a-0001

>EsuBft4848_2 ID=EsuBft4848_2|Name=EsuBft4848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=42bp
MSPWPVALEDVSFFWRLSFAFLLEISGCWGRRVGLTPGRAGG

mRNA from alignment at Scaffold_499:728784..732701-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4848_2a-0001 ID=EsuBft4848_2a-0001|Name=EsuBft4848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3918bp|location=Sequence derived from alignment at Scaffold_499:728784..732701- (Ectocarpus subulatus male Bft15b)
ATGTCTCCGTGTTCGGTGTTGTTTTCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCGCGCAATGTCACGCAGTTGTGCGC
AGACATGTGTGGAAAGTAGGGCCCGTCGCGCTCGAGGATGTCTCCTTCTT
CTGGCGTCTTTCTTTTGCGTTCTTGCTTGAAATTTCGGGCTGTTGGGGCC
GAAGGGTCGGATTGACCCCCGGAAGAGCCGGCGGGTAGCTCCGTCACAAA
AGGGTTAAAGCACCAGCATCCCAGGGTCTCATTTAAGGTGTATAGGCAGA
CTTGCCAATGTATAGGCAGACTTGCCAGAGGTTCCACCTCATAACAAGTT
TACCGCTCATTATCCCCGCACATGGCATGCCACGCGATCATGACCATGAA
AACATTTTAGTATCTTAACTGTCACCATGATAGCCCAGTACCAACCATTT
TTTGTTCTAGATACACTAGTGTGGACCACATTCATCACCCTGTCTGAGGA
CTCTGTGTTCCTCAACACGCGTGGTACGATGATCAAATCTTGGTGATGGT
GTTGTGCAAACTAGGTTAATTCCGATACATGTGTCTCCATGAGCCACTAC
TGTCTCGAGACACCAAAAGCACATCTTTATCACAGATGAACTTGTGGCGC
ATAGAGGGGGGGGTGATGTGGAAGACTCCTGTCGGAAGCATAACCAACCA
ACCACTCGTGCACACACAAAGTAGGAGGATACGATCCATCGGAGTAACTT
GCCATCTGTAGAGTGACAAGTCACACATCGTTGAGATCTGTCTCTTCCAT
CGTCTTTGACCACCCGCCGAGAGTGGAGGCGGAGAGTCTTCGATTCTCAT
TCCTCTGCCTTCTGCTGGTCACCCTTTCTACCTCTCTCCTCGTTACATCT
CAGGAAAGGAAATAGCCATCCTTGGCAGTAGGGGAACACTGCAACGGCAC
CGGCTCCTGTCTCTGACGGTAGCCTGTGTCCTCATACCAGTGTATCTGCG
ATTCACATCTACCGGCGCAGCAGTGGATTCGTATTCAACGCGTAATTAGT
ACGAGGCTGCTCTATCATGTCGGTCCGACTTTGACACCCATCAGCCTCCT
TCCCAGTTGGCTTTTCAGCAGAGAATCGCATGCTCGACCGTTTGTGCCGA
CCTGCGCAATCCCCTGACCTAGACATGAACAAAAATGTACTGTATGTTGG
TGTTGTGCAGAATCTCGGTACGTATTGTTGACGCGTGTGACACGAGTTGT
TTGTTGCTGAGATGGCGGTGACTCTCCTCCCCCACCCTTATGGAGGGTCT
CGCATCGATTGGTCCTGATCGGAAGACACGCCACCGACAAGTTGTTAAGC
TAGACCACCAGGTGGGGTTGTTCTGTGTGAATCATTGTTACTCGGCGGAG
TCAAAAGGTTCTCGATGCGCACATCCGCCTTACAACGTCGTCCCATGGTC
ACAACAGGCGATGAAATACGCAAGCATTTTCGACACTTTTGTAATCGACC
ACATCCAATCCTTGACTGCAACATTGCATGATTCATGGACCGAGCAGCGC
TGGCGGTCCACCTTTTCCTGCAGCGTTCACGGGGACAACATGAGGAGGGA
GAGAAAACCACGTCCGGGCGAATGTTGACTCTCTTGACGAAGCTGGCAGG
GAAGAGCCCTCCCGGGGAGATGGGGGAGACGAGGAAAAATACCCGGAGGT
GGCAGGCGAGAGACGACACGGGATGGCGAGGAGGAAACTCGCACAGGAGA
CGGGTGTCGAGAGTCAAGCATCCGAGAGGGAGTTATATCCTCCTGAGGAA
GCTGGCAGCGAGTTGGGGGCGCCCGCGGGGGCCAGGGGGGTGGCGAGGAG
GAAACACCCGACGAAGCTGGCCGAGACGACACTGCCTGACGAGGAGGATG
GGCGGGAGCCAGGGACGGGTTACGGTGAGGGAAAGGCGGTTGGGCTGGGT
TGGGTTTTTCGTGCGGCAGGAACTGTCGATCCCCCAGGAACGAATACAGA
AAAACAGATATATGTGCCGTGACAAAACCGTCCATTGGATACCCCGGCTG
GTGGAGGAAGGACGCATTTCGTGCTGGATGCACAACGCATTCCAACTACC
GTCTTACATATTTCTTCCTTCGGCAACTGCCGTACAAGACATGAGTAAGG
CCAGGACCTATCCTGTTGCTGTGAGTGGGTGGTAAGTATGCAAACCTCGG
TGCACCCGGTGCAACGCACTGTGTCAAAAACCTCGGAACATGCCATGCGA
AACGCGCCGCGTACGGGGGGTTGTTGAAAAAACATCACGTAACACGGGCC
AACCCTTCCATACCAGATCCACTTCGTTCTTAGATGAGGAAACCCGTTCC
CTCCGCAGGCCTAGGGCGCGTAACAATTGTATTGGTCTCGTACCACCACA
TCTTCAGATATTTACCGTTGTTTGCACAGGATATCACCCCCCCGCCTGGT
GCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTC
AATGGTCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCCCCCC
CCGGTGTTTGCCTATCGGGATTGGGTTTTCGTCGCTTGGCAACGACGTTG
TAAAACAAGCCAATTCACTTCGTGAACTCGGCAACCAGGTTACCGTTTTT
TTTTTTTTCCTCCGTTTATTTTTTTTGGGCGGTAACCATAATGATGGTTG
AGTAGATCATGTTGTGCGGGGTGAACCCTCACTCCGCGCAAGGGGGATGA
TCGCACCACGTTGTGTTAAAATGGTCAAGCACCCTCGAGGCAGTTACACA
GTGCTTACAACTGTCTCTGGAAGTGAAAGCACCAGAAAATAAATTAATTC
ATACGCAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACA
CCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAATATCTCAC
GGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCG
TGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTAC
GGCATGCACGACTATGAGTACAACCCCCCCTGAACCAAACTTCAAAGCCC
TGTGAGAAGCACTCCACAGCAACAAAGGAAGCGTGATAGCGTCGAAAATG
GTGGGGATGGAAACGGGTCGTCGAGAGCTTTCCGAAGACCAACAACATCG
TTTTTTGTATACTCCAGCCTTTTCGTCGTGGAGCACTCGAGCTGTGAACA
TCGACAACATCGATACAGGGGGGATGTTATCTGGTGTCAAGTACAGGTAC
ACGCATGGCACGGCATGTTGGTGCCACACACGCTCCGAACTGCTGTGCAT
ACCATACATCGCTGCGACAGCACTACTCTCAGCTCCAGTAGTCAAGCGTG
AACTTCCATCGAGAAAGCTCCCACCTTGCAGAGAGGGGCAGAGGCGACCA
ACGTGATCTCAAAGGCGGACTGTTTTCGTGCAGCGCGCCGAGCGCAACGG
CCAAGGTCAACTATTACGTGTCTCTTGAAGGGCACTTGAGATGGCGAGAC
ATTTTGTCGTGAAACCCTTGGACACTTGCGTCCCAAACGACTGCCAGTGG
GACTCACACACCTGTTCCACCGTGAGCTGACCTCCTTAGTTGGGATTGCG
TCCGGCCTAGCTGAGCTTTCCGGCTGTCCGTGATCGTGTCACCAGGTACA
CTGGTACTGGGACTGTCGGCCGTGACCGATCTACATATCCCCCCTCTTTT
CATGGAGGCGTCCACACGCCGTATAAAAGCGGCGGGACGTACAGATTGGC
CTACAGATGCATGTCACATCGCGCACTGTTCAATGAGCAGTAGCATCTGC
TTATAGCTCAGCAAAGTGAACATTTACCGTGCTGTAGCCCAGCCACCGTC
AGGAGAGGATCCACACAA

Coding sequence (CDS) from alignment at Scaffold_499:728784..732701-

>EsuBft4848_2a-0001 ID=EsuBft4848_2a-0001|Name=EsuBft4848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=129bp|location=Sequence derived from alignment at Scaffold_499:728784..732701- (Ectocarpus subulatus male Bft15b)
ATGTCTCCGTGGCCCGTCGCGCTCGAGGATGTCTCCTTCTTCTGGCGTCT
TTCTTTTGCGTTCTTGCTTGAAATTTCGGGCTGTTGGGGCCGAAGGGTCG
GATTGACCCCCGGAAGAGCCGGCGGGTAG