EsuBft4845_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4845_2a-0001
Unique NameEsuBft4845_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:1162..4179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog588596.U9UK42
ProteomeIdEsuBft4845_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl4751|Fungi
Length168
Evalue2.87e-21
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4845_2aEsuBft4845_2aEctocarpus subulatus male Bft15bgeneScaffold_358 1162..4179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4845_2a-0001EsuBft4845_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 1162..4179 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4845_2a-0001-exonagat-exon-4799Ectocarpus subulatus male Bft15bexonScaffold_358 1162..1285 -
EsuBft4845_2a-0001-exonEsuBft4845_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 1379..1754 -
EsuBft4845_2a-0001-exonagat-exon-4801Ectocarpus subulatus male Bft15bexonScaffold_358 1807..2609 -
EsuBft4845_2a-0001-exonagat-exon-4800Ectocarpus subulatus male Bft15bexonScaffold_358 3506..3699 -
EsuBft4845_2a-0001-exonagat-exon-4798Ectocarpus subulatus male Bft15bexonScaffold_358 3991..4179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4845_2a-0001-cdsEsuBft4845_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 1162..1285 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4845_2a-0001 ID=EsuBft4845_2a-0001|Name=EsuBft4845_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1686bp|location=Sequence derived from alignment at Scaffold_358:1162..4179- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGCAACAGGGGTGTGGGCAGGAAGGAGGCTCTTCGCAAGCTGC
GAAGCATCGATCGCAGCTGGAAAAGGCGGCCGCAGCATCTGCTGCATGTA
GATCGGGCTGGGAGCGGGGGCAGGATTATTTCCGCGCCGTCATCAAGGAA
TGCCAATCCGCTGTAGCAGTCACATCTGCTGGACTCAATGAGTATGTTAT
CGTCTCGCATGCGCAAGCCGGCAGCCTGCAGTTCAAGGTCTTGGTTCTGA
AAGGACTGTATCACAAGCTGCTCAGGGGGGTGTCCAAGAGGCAAGCTTTC
GAGGAAATGGCGGAGTTTTTGAAGTGGCATCCAGCACCCTCCGTGAGTGG
GAGCTTTCCTATCGCACCAAGGGCCATATCCAGGACGAGTGCACCTACAG
GGCCAACGACGGCCAGCGTTTCGCGTGGGTGCCACCCAACTATTACGCGC
TCAAAAAGCNCGGCGTACTTTGAGCACCGCGACTACATGGAGATCTGGAT
CGAGGCGACTACGGACGAGGCGCGGTCCTGGGAGGTGCAAGTGCAAGAGA
AGGACAGGCAAGAAGATGGACGTGTTTGGGTTTGCGTGCATGCCTTCAAG
GAGACCCTCTCCGAATTTCCTCTGCATCTCCGCGAGAGGGTCACCAGCAA
AAAAACTTACTCTGACGGCAGAAGAGCGATCTTCTGCTACCAGGACGAGT
GCACCTACAGGGCCAACGACGGCCAGCGTTTCGCGTGGGTGCCACCCAAC
TATTACGCGCTCAAAAAGCAGGGAGACGGTCAAGGCATTATGATCTCTGG
CACCATCGTCGACAACGTGGGATTCGTTGCGGGTGACCAGGCTGATATCG
ACAAGGCGCAAACCTTGCGGCGTAAGCGGTGCGATACTTGGGCACCCGAA
CACGCGGCAGGTGACCCGACCAAGCCAGAGACGTATCGTAACATCGACAA
GCTCTACAAGGACGAAGATGGCAAGTTCTGGACCTACTACAGATTCGAGT
ACGGCAAGAGCAGGGACGGCTACTGGACGGGTGCGAATTTGGTTGAACAA
ATGGCAGATGTATTGGACCTCTTGGCGGTTAAGTATCCGAAGCCCATCTG
CTTTTTCGACTGGTCATCTCGCCACGACTACTGTATCGAAGACGGGGCAC
CGAGCGCAACTCGCATGAACGCGGGGTACGGGGGGGACACGCCCAAACTC
AAGAAAGGGACGGTGCAGTACCTCACCTTTCAGGAGGGCGAGAGTCCTTT
CTACGACCCGGGTGCCGAGGATTACATTGGCAAGCTCAAGGGGCTAAAGC
AAGTTTTGTTTGAGAGGGGGCTCTGGAACGCGGACATGAGCACGAAAGGA
ATCAAGAAAGGCCAACAGAAGTATGACCCAGCGTTGTGTATGCCGGTGGT
GTTGGGTACGCAGGAGGACTTCGCGAGCGTAGAGCCTAGCCTAGTGGTGT
TAGTGAAGCGCCATGGAGGAGTGGCAATCATGCTCCCCAAGTTCCACTGC
GAGATCAACCCGATAGAGCTGGTGTGGGGTAGATCCAAGTATTGGGTCCG
GCAGCACTGCAAGACGGTGGCCAACTTCAAAGAGGTGAACTGCGACGGAC
TCCAGGGCGCGGAAGCAGTACAGAAGAGGGACACCTTTAAGTCTCACCGC
AAGCCAACTCCGTCAGAGTACATTAACCCTAAGTGA
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protein sequence of EsuBft4845_2a-0001

>EsuBft4845_2 ID=EsuBft4845_2|Name=EsuBft4845_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=561bp
MTEQQGCGQEGGSSQAAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKE
CQSAVAVTSAGLNEYVIVSHAQAGSLQFKVLVLKGLYHKLLRGVSKRQAF
EEMAEFLKWHPAPSVSGSFPIAPRAISRTSAPTGPTTASVSRGCHPTITR
SKSXAYFEHRDYMEIWIEATTDEARSWEVQVQEKDRQEDGRVWVCVHAFK
ETLSEFPLHLRERVTSKKTYSDGRRAIFCYQDECTYRANDGQRFAWVPPN
YYALKKQGDGQGIMISGTIVDNVGFVAGDQADIDKAQTLRRKRCDTWAPE
HAAGDPTKPETYRNIDKLYKDEDGKFWTYYRFEYGKSRDGYWTGANLVEQ
MADVLDLLAVKYPKPICFFDWSSRHDYCIEDGAPSATRMNAGYGGDTPKL
KKGTVQYLTFQEGESPFYDPGAEDYIGKLKGLKQVLFERGLWNADMSTKG
IKKGQQKYDPALCMPVVLGTQEDFASVEPSLVVLVKRHGGVAIMLPKFHC
EINPIELVWGRSKYWVRQHCKTVANFKEVNCDGLQGAEAVQKRDTFKSHR
KPTPSEYINPK
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mRNA from alignment at Scaffold_358:1162..4179-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4845_2a-0001 ID=EsuBft4845_2a-0001|Name=EsuBft4845_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3018bp|location=Sequence derived from alignment at Scaffold_358:1162..4179- (Ectocarpus subulatus male Bft15b)
ATGACAGAGCAACAGGGGTGTGGGCAGGAAGGAGGCTCTTCGCAAGCTGC
GAAGCATCGATCGCAGCTGGAAAAGGCGGCCGCAGCATCTGCTGCATGTA
GATCGGGCTGGGAGCGGGGGCAGGATTATTTCCGCGCCGTCATCAAGGAA
TGCCAATCCGCTGTAGCAGTCACATCTGCTGGACTCAATGTAAGAGATGT
TGGGCTACACGATGCAGTGTAAATGTATGCATGCGTTGATCGCAGTTTTC
GTGCTGCAAGCACTGCTGTTGGTTGTAATACTGTGCGGTTGTCGCTATGC
TGCTCCTGCTGCTGCCGTATGTATGATGTGATGCCACCCATGTACATGTC
TGGGTGAAGTTGCGCGCGACTGTTGGGCCGTAAGAACCACTCCGCCCCCA
CTCTTGTCTTTCATCCCCGCTGCTTGTCCCCATGATCTTACCATTGATTT
TGCCCCCTTTCCCACCTGACGTACATGCAGGAGTATGTTATCGTCTCGCA
TGCGCAAGCCGGCAGCCTGCAGTTCAAGGTCTTGGTTCTGAAAGGACTGT
ATCACAAGCTGCTCAGGGGGGTGTCCAAGAGGCAAGCTTTCGAGGAAATG
GCGGAGTTTTTGAAGTGGCATCCAGCACCCTCCGTGAGTGGGAGCTTTCC
TATCGCACCAAGGGCCATATCCAGGTGAGAGGAGTTATGTACCAGACATC
CGTTTCAACCGCAATGAAAGATGTGCGTGCCGTAGACTCTGAATGTGGCG
ATGAACATAAAATGGTACTGCTGTAGCTCAACAAGCTCGCCGGCCGTTGC
CGTGAACATGCTCCCTCCGTGCAACGCATGCACTATTGCTCCCTTTCCAT
CCCGCACCCGTGCATGCTTTTGAGCCACCCTTTCCCTTTTTCTCGACAAT
GCGGTGTTCTTTGTCGCGTGCACCCTTGCTGTATTTGAAGGTGGACCAGA
GGGGGAAACACGAACGGCGGTGGATCCTGAGCTTGGACGAGGGGCTTCTC
GTGATGGTACGCCAATGGATCCAGGTGAACTCTATCAAAAATGGGGAGCC
CAACATGACAGCCGAGGGCTTCCGCGAGTACCTCAACAAGGACGTCTTGC
CACAGGTAGCAGACACCAAAACGTGCGACTACGACCCCTTCAAGCACGCT
CCTGTCACCAAGACGACGACTGAAACGACATCAGGAATGATAGTGATGGC
GTACTCGGTGACCGTTCGCACGGCGCGCTCCTGACTGCACAAGCTGGGGT
GCGAGTACCGCCATCACAAGTCGGGCCTGTACTTTAACGGCCATGACCGC
GAAGAGGTACTCGCGTACCGGGTCGAGAAGTACCTCCCGGCGTACTTTGA
GCACCGCGACTACATGGAGATCTGGATCGAGGCGACTACGGACGAGGCGC
GGTCCTGGGAGGTGCAAGTGCAAGAGAAGGACAGGCAAGAAGATGGACGT
GTTTGGGTTTGCGTGCATGCCTTCAAGGAGACCCTCTCCGAATTTCCTCT
GCATCTCCGCGAGAGGGTCACCAGCAAAAAAACTTACTCTGACGGCAGAA
GAGCGATCTTCTGCTACCAGGACGAGTGCACCTACAGGGCCAACGACGGC
CAGCGTTTCGCGTGGGTGCCACCCAACTATTACGCGCTCAAAAAGCNCGG
CGTACTTTGAGCACCGCGACTACATGGAGATCTGGATCGAGGCGACTACG
GACGAGGCGCGGTCCTGGGAGGTGCAAGTGCAAGAGAAGGACAGGCAAGA
AGATGGACGTGTTTGGGTTTGCGTGCATGCCTTCAAGGAGACCCTCTCCG
AATTTCCTCTGCATCTCCGCGAGAGGGTCACCAGCAAAAAAACTTACTCT
GACGGCAGAAGAGCGATCTTCTGCTACCAGGACGAGTGCACCTACAGGGC
CAACGACGGCCAGCGTTTCGCGTGGGTGCCACCCAACTATTACGCGCTCA
AAAAGCAGGGAGACGGTCAAGGCATTATGATCTCTGGCACCATCGTCGAC
AACGTGGGATTCGTTGCGGGTGACCAGGCTGATATCGACAAGGCGCAAAC
CTTGCGGCGTAAGCGGTGCGATACTTGGGCACCCGAACACGCGGCAGGTG
ACCCGACCAAGCCAGAGACGTATCGTAACATCGACAAGCTCTACAAGGAC
GAAGATGGCAAGTTCTGGACCTACTACAGATTCGAGTACGGCAAGAGCAG
GGACGGCTACTGGACGGGTGCGAATTTGGTTGAACAAATGGCAGATGTAT
TGGACCTCTTGGCGGTTAAGTATCCGAAGCCCATCTGCTTTTTCGACTGG
TCATCTCGCCACGACTACTGTATCGAAGACGGGGCACCGAGCGCAACTCG
CATGAACGCGGGGTACGGGGGGGGTGAGGAAGGGTAAACAGCTAGCTGTC
CAGGACGCTACGACCCTATTGGCAGACACGCCCAAACTCAAGAAAGGGAC
GGTGCAGTACCTCACCTTTCAGGAGGGCGAGAGTCCTTTCTACGACCCGG
GTGCCGAGGATTACATTGGCAAGCTCAAGGGGCTAAAGCAAGTTTTGTTT
GAGAGGGGGCTCTGGAACGCGGACATGAGCACGAAAGGAATCAAGAAAGG
CCAACAGAAGTATGACCCAGCGTTGTGTATGCCGGTGGTGTTGGGTACGC
AGGAGGACTTCGCGAGCGTAGAGCCTAGCCTAGTGGTGTTAGTGAAGCGC
CATGGAGGAGTGGCAATCATGCTCCCCAAGTTCCACTGCGAGATCAACCC
GATAGAGCTGGTGTGGGGTAGATCCAAGTATTGGGTCCGGCAGCACTGCA
AGTACACTATCGCGTGCTTGCAGACCAACGTTTCTTAAAGCTACGCGGTG
GCCGGAGACCGCTTGAGGCTAGCAATTGTGCAAGAGATCTGCAGGACGGT
GGCCAACTTCAAAGAGGTGAACTGCGACGGACTCCAGGGCGCGGAAGCAG
TACAGAAGAGGGACACCTTTAAGTCTCACCGCAAGCCAACTCCGTCAGAG
TACATTAACCCTAAGTGA
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Coding sequence (CDS) from alignment at Scaffold_358:1162..4179-

>EsuBft4845_2a-0001 ID=EsuBft4845_2a-0001|Name=EsuBft4845_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1686bp|location=Sequence derived from alignment at Scaffold_358:1162..4179- (Ectocarpus subulatus male Bft15b)
ATGACAGAGCAACAGGGGTGTGGGCAGGAAGGAGGCTCTTCGCAAGCTGC
GAAGCATCGATCGCAGCTGGAAAAGGCGGCCGCAGCATCTGCTGCATGTA
GATCGGGCTGGGAGCGGGGGCAGGATTATTTCCGCGCCGTCATCAAGGAA
TGCCAATCCGCTGTAGCAGTCACATCTGCTGGACTCAATGAGTATGTTAT
CGTCTCGCATGCGCAAGCCGGCAGCCTGCAGTTCAAGGTCTTGGTTCTGA
AAGGACTGTATCACAAGCTGCTCAGGGGGGTGTCCAAGAGGCAAGCTTTC
GAGGAAATGGCGGAGTTTTTGAAGTGGCATCCAGCACCCTCCGTGAGTGG
GAGCTTTCCTATCGCACCAAGGGCCATATCCAGGACGAGTGCACCTACAG
GGCCAACGACGGCCAGCGTTTCGCGTGGGTGCCACCCAACTATTACGCGC
TCAAAAAGCNCGGCGTACTTTGAGCACCGCGACTACATGGAGATCTGGAT
CGAGGCGACTACGGACGAGGCGCGGTCCTGGGAGGTGCAAGTGCAAGAGA
AGGACAGGCAAGAAGATGGACGTGTTTGGGTTTGCGTGCATGCCTTCAAG
GAGACCCTCTCCGAATTTCCTCTGCATCTCCGCGAGAGGGTCACCAGCAA
AAAAACTTACTCTGACGGCAGAAGAGCGATCTTCTGCTACCAGGACGAGT
GCACCTACAGGGCCAACGACGGCCAGCGTTTCGCGTGGGTGCCACCCAAC
TATTACGCGCTCAAAAAGCAGGGAGACGGTCAAGGCATTATGATCTCTGG
CACCATCGTCGACAACGTGGGATTCGTTGCGGGTGACCAGGCTGATATCG
ACAAGGCGCAAACCTTGCGGCGTAAGCGGTGCGATACTTGGGCACCCGAA
CACGCGGCAGGTGACCCGACCAAGCCAGAGACGTATCGTAACATCGACAA
GCTCTACAAGGACGAAGATGGCAAGTTCTGGACCTACTACAGATTCGAGT
ACGGCAAGAGCAGGGACGGCTACTGGACGGGTGCGAATTTGGTTGAACAA
ATGGCAGATGTATTGGACCTCTTGGCGGTTAAGTATCCGAAGCCCATCTG
CTTTTTCGACTGGTCATCTCGCCACGACTACTGTATCGAAGACGGGGCAC
CGAGCGCAACTCGCATGAACGCGGGGTACGGGGGGGACACGCCCAAACTC
AAGAAAGGGACGGTGCAGTACCTCACCTTTCAGGAGGGCGAGAGTCCTTT
CTACGACCCGGGTGCCGAGGATTACATTGGCAAGCTCAAGGGGCTAAAGC
AAGTTTTGTTTGAGAGGGGGCTCTGGAACGCGGACATGAGCACGAAAGGA
ATCAAGAAAGGCCAACAGAAGTATGACCCAGCGTTGTGTATGCCGGTGGT
GTTGGGTACGCAGGAGGACTTCGCGAGCGTAGAGCCTAGCCTAGTGGTGT
TAGTGAAGCGCCATGGAGGAGTGGCAATCATGCTCCCCAAGTTCCACTGC
GAGATCAACCCGATAGAGCTGGTGTGGGGTAGATCCAAGTATTGGGTCCG
GCAGCACTGCAAGACGGTGGCCAACTTCAAAGAGGTGAACTGCGACGGAC
TCCAGGGCGCGGAAGCAGTACAGAAGAGGGACACCTTTAAGTCTCACCGC
AAGCCAACTCCGTCAGAGTACATTAACCCTAAGTGA
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