EsuBft4827_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4827_2a-0001
Unique Name	EsuBft4827_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:309265..311802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft4827_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	67
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4827_2a	EsuBft4827_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 309265..311802 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4827_2a-0001	EsuBft4827_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 309366..311409 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4827_2a-0001-exon	agat-exon-29082	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 309265..309374 +
EsuBft4827_2a-0001-exon	EsuBft4827_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 309955..310121 +
EsuBft4827_2a-0001-exon	agat-exon-29083	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 311406..311802 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4827_2a-0001-exon	agat-five_prime_utr-10725	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_195 309265..309365 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4827_2a-0001-cds	EsuBft4827_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 309366..309374 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4827_2a-0001-exon	agat-three_prime_utr-16871	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 311410..311802 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:309265..311802+
coding sequence from alignment at Scaffold_195:309265..311802+

spliced messenger RNA

>EsuBft4827_2a-0001 ID=EsuBft4827_2a-0001|Name=EsuBft4827_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=674bp|location=Sequence derived from alignment at Scaffold_195:309265..311802+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACTTCAAAACCTTCCGGGTGGGGCACATCTGCGTCTGCTGGGTCCCAAC
GTTCCTCTCGTACTCACGACCGCCCGCATACACGAAAGTACCGCAGGCAG
GATGCAGGCCGCCGTTCGAGAGGGCATGACTCCCGCGGATGCACGGATGC
CCATCGGGACGCTGGCGGAGATGGTAATCGGAAGGACCGGGGTGGTAGTC
ACCAAAATACCAGGGGAGAGGCTCGTGGTAGCCACGGACCTACTCATTTC
TCCTTCTATGGTCCGAGCAGCAGGCAAGTGAAGCGTTTCTTGGAGACGAA
GGACAAGTCAGGGCCCTCGGCATACCGTCGGCTGCTCAAGCTGCTCGCGG
ATGAGTGGGAACCGAAAGGTCTCAACCGGGGCATCGACAAGCTGCAGGAT
TTTGGTGTGCCCAACGGCACGCCGTACAGCAAATGCGTTACAAAGCTTAA
GGCGTTGGCAATGTCGGAGTTGGCCTCGCACAGAGCTTTCGCGCCGGAAG
TGCGCATGGTACAGCGTGCGCTTCGGAACGCTTTGTTGGAGCAGTATCTG
AATGTTCTCTCGTCTTTGCCGTTGAAGGATAAGATTCTCCACAACGCAGT
GTTTTGTGATCAGGATGAGCTTTGGGATGCTTTGTCTTCGGAGGAAGCAC
TAAATCATTCGCCCGCCTACAATG

protein sequence of EsuBft4827_2a-0001

>EsuBft4827_2 ID=EsuBft4827_2|Name=EsuBft4827_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MQAAVREGMTPADARMPIGTLAEMVIGRTGVVVTKIPGERLVVATDLLIS
PSMVRAAGK

mRNA from alignment at Scaffold_195:309265..311802+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4827_2a-0001 ID=EsuBft4827_2a-0001|Name=EsuBft4827_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2538bp|location=Sequence derived from alignment at Scaffold_195:309265..311802+ (Ectocarpus subulatus male Bft15b)
AACTTCAAAACCTTCCGGGTGGGGCACATCTGCGTCTGCTGGGTCCCAAC
GTTCCTCTCGTACTCACGACCGCCCGCATACACGAAAGTACCGCAGGCAG
GATGCAGGCCGTTCGAGAGGGCATGACTCCCGCGGATGCACGGATGCCCA
TCGGGACGCTGGCGGAGATGGTAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGCAGGCAGGATGCAGGCCGTTCGAG
AGGGCATGACTCCCGCGGATGCACGGATGCCCATCGGGACGCTGGCGGAG
ATGGTAATCGGAAGGACCGGGGTGGTAGTCACCAAAATACCAGGGGAGAG
GCTCGTGGTAGCCACGGACCTACTCATTTCTCCTTCTATGGTCCGAGCAG
CAGGCAAGTGCAGTATGGTATAGCACCACAAAACTTGCCGTTTTTTCAGC
AGCCGTGGGCTATAGTTGCGCTCGGCAACCCGTACCCGTTGCAGCCGCCG
TCCATGAATCCTGGGGGTCAACAATGGAAGATGACAATCCCACAGGACCC
GCTTACTGTCGCTTCCGCCCGCATGATTGATGCCGCCATGCCCCCGGTTA
GTACTATGCCGCCCCACACCGTTGAGACGTCGGCCAAAGCGACCCAACCT
ATCGTTGACCACCCCGAGCTTGTGCTAGAACGTGCGCGGCAGCTATTGCA
TCGCATGTCTCTGTTGAGTTTCCCCGAGCAGCGACAACCGTCGGCGACGG
CGTCGCCGTCGGTAGCGGCTTTTGACGTGCCGTCGTCGAGACTGCCGTCG
CCGGTGTCACCGCTTTCGATACTGTCGCCGCCGGTACCGCCGCTGCAGAG
GACGGTGCCGCCGGTGCCGCCGTCGCAGATGCCGTAGCCGCCGGTGCAGG
TACCGCAACCGCCGTTGCTGCAGTCGTCGGTGCTGCTGCCGCCGGTGCCG
CACACACCGCCGCCGCCGCCGCCGCCGCCGGAACCGCAGCGGTCGGCGCC
GCACCCACCGGTACCACCGGTGCCGCCGGTGCCACCGATGCCGCCGGTAT
CGCAGCCGCCGGTGATGCCACAACATCCGGTGCCGTTCGTAAATTCAGAG
CCACCATCAATAGCCTCCGCTTTGCCCTCGCATGCATCTTTTGCTAATGT
GAAACCAGAGGTACCGCCCCCCGCCCCCGTTGTGACAACGGAGACGGCAC
AGATTTTTGGAATGGTACCAACGCCCTCCCAACGTATTTTGCCACAGGAA
TCGCCGGTCTCGGCTATCGCCGTGTCTGTAGCTAGGCCGCCGCTTCCGGC
CACGCAGGCGGCCGCAAGCGATTTCGCTGATGTACGGGCACTGCCCTTGT
CGTCTGCCGGTGCACGCACTGCGCAGGCACAGCTTGATGCGAACGCCGTT
GCCGCCGCAGAGGCGTACGCCCTCAGCGTGCGCAAAGGATACGGCAAGCT
CAAACTGTATGCGGTGGTGCCGCTTCCTCCTGCAGAATTTTCTGCTTTCG
TTCGTTCGACCGAAATTGTGTTGGCTGAAATCCTGTCGGCCGCTGATACC
TCCGGCAAGCAGACCATCAAGTCGCCCACATGGGTGGCTGGATGGTATGC
TCCCTTCCACAAGCATGTCCTCATGGCCATTTCGAATCCTCAAGGCGCTA
ATGCCGCAACCCACGAATTGGTGGATTCTTCATTTTCTCAGGTGAAGCGT
TTCTTGGAGACGAAGGACAAGTCAGGGCCCTCGGCATACCGTCGGCTGCT
CAAGCTGCTCGCGGATGAGTGGGAACCGAAAGGTCTCAACCGGGGCATCG
ACAAGCTGCAGGATTTTGGTGTGCCCAACGGCACGCCGTACAGCAAATGC
GTTACAAAGCTTAAGGCGTTGGCAATGTCGGAGTTGGCCTCGCACAGAGC
TTTCGCGCCGGAAGTGCGCATGGTACAGCGTGCGCTTCGGAACGCTTTGT
TGGAGCAGTATCTGAATGTTCTCTCGTCTTTGCCGTTGAAGGATAAGATT
CTCCACAACGCAGTGTTTTGTGATCAGGATGAGCTTTGGGATGCTTTGTC
TTCGGAGGAAGCACTAAATCATTCGCCCGCCTACAATG

Coding sequence (CDS) from alignment at Scaffold_195:309265..311802+

>EsuBft4827_2a-0001 ID=EsuBft4827_2a-0001|Name=EsuBft4827_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_195:309265..311802+ (Ectocarpus subulatus male Bft15b)
ATGCAGGCCGCCGTTCGAGAGGGCATGACTCCCGCGGATGCACGGATGCC
CATCGGGACGCTGGCGGAGATGGTAATCGGAAGGACCGGGGTGGTAGTCA
CCAAAATACCAGGGGAGAGGCTCGTGGTAGCCACGGACCTACTCATTTCT
CCTTCTATGGTCCGAGCAGCAGGCAAGTGA