EsuBft4781_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4781_2a-0001
Unique Name	EsuBft4781_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:234590..237644 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4558.Sb09g029620.1
ProteomeId	EsuBft4781_2
Protein domains	PTHR10492
Protein domains	IPR027417
Protein domains	IPR010285
Owner	apollo_admin@sb-roscoff.fr
Note	atp-dependent dna helicase pif1 os:homo sapiens gn:pif1 pe:1 sv:2 [Automatic annotation]
Nb exon	4
Max annot lvl	35493\|Streptophyta
Length	2586
Hectar predicted targeting category	other localisation
Evalue	1.31e-107
EggNOG OGs	COG0507@1\|root,KOG0987@2759\|Eukaryota,37I5H@33090\|Viridiplantae,3GMSB@35493\|Streptophyta,3M24Q@4447\|Liliopsida,3IEP6@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K15255
EC	3.6.4.12
Description	Belongs to the helicase family
COG category	D
BRITE	ko00000,ko01000,ko03029,ko03032

Cross References

External references for this mRNA


Database	Accession
GO	0003678
GO	0008026
GO	0000723
GO	0097159
GO	1901363
GO	0043231
GO	0006281

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4781_2a	EsuBft4781_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 234590..237644 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4781_2a-0001-exon	agat-exon-28478	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 234590..235228 -
EsuBft4781_2a-0001-exon	agat-exon-28477	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 235436..235883 -
EsuBft4781_2a-0001-exon	EsuBft4781_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 236096..236885 -
EsuBft4781_2a-0001-exon	agat-exon-28479	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 236936..237644 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4781_2a-0001-cds	EsuBft4781_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 234590..235228 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4781_2a-0001	EsuBft4781_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 234590..237644 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:234590..237644-
coding sequence from alignment at Scaffold_647:234590..237644-

spliced messenger RNA

>EsuBft4781_2a-0001 ID=EsuBft4781_2a-0001|Name=EsuBft4781_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2586bp|location=Sequence derived from alignment at Scaffold_647:234590..237644- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGATGATCGCAATCGTACTGGAGTTAAAGTTTGCGGCAAGAGATA
TCCTCAACCATGGCGTAAAGCTGCTGTAGTCAACAGTAAAAACGGGAGAG
CGGAATACCGTCGACGCGACACAGGAGAAAAATTTCCGTACAAGCACAAA
GTTAACGGCAAGTATGTAGAATCTTTCGCTACGAACCAATGGATCGCCCC
GTACACTATATGGCTCCTTTCCAAATACAACTGCCACATGTGTTTCGACG
TGTGCACCGGTAGCGCGATAGTCAAATACATATACAAGTATATAAACAAA
GGTGCTGATTTTATTAAGGCGAAGATTCTATGTGACGGCGACGAGATCGA
GGCATACCGCTCAGCTCGTTACATATCAGCTGCAGAGGCTGCGTGGCGGT
TGCTGGGTTTCCATGTCATCGAACGTAACCCGTCCGTCAGTTCTCTCCGA
CTGCACCTTCCCAACGAACAGCAAATTGTTGTAGACGAATCTCTTTCACG
CGCTGAGCAAAAGGTGGCGGCACGGGCGTCCACGTCCGATCTACTTCTTT
ACTTAGGGAGGCCTACTGACCAAACATTTGATTCGCTTACCTACTTGGAC
TACAATGAACAGTACATCGTCAAGAAAGACAAGGCCCGTCAGGGGACGTT
TTTCAGAGACAAATTCCGCAACTATGTCACACCGCGGTCGTCCGATAAAC
ATGTTGCGCGGAGGCCTTCTGACCAAACATTTTATTCGCTTACCTACTTG
GACTACAATGAACAGTACATCGTCAAGAAAGACAAGGCCCGTCAGGGGAC
GTTTTTCAGAGACAAATTCCGCAACTATGTCACACCGCGGTCGTCCGATA
AACATGTTGCGCGTGTGTCCGCCATGTCCCCGGACAAAGGTGATGTTTTC
TACTTGCGCCTGCTTCTACACCATAAACCAGCAAGATCTTTCGAACAGTT
GAGAACGCACGATGACACCGTCTACGACACGTTTCAGGACGCCGCCAGAG
CAATGGGAATTATAAAGCACGACGACGAGTACAGAATTTGCTTACAGGAG
GCGGTCATATTTAACACGGGTAGACAACTGCGTGAACTATTCGTTACCCT
TATTCTTGACGGCGCTCCGGCCAAAATATTGTGGGAGCAGTTCAACCAGG
ACTTCACCGAAGATTTGCGAATAAACATGTCTGATCGGGATGCCAACAAC
ACCGCACTCCGCCAAATTGATCTCGTTTTGCAGCACCACGGACGAACGAA
TGAGGTCGTTGGGCTGCCGGCGGTAATCCACCTAGATACCGAATACATAC
GATTTAAACACATGTTCGACCCAGCTCAGATGAGTGCATTCGTTGACGAG
CACTTGGCAAATCTCACCCACGAGCAACGGCATGTGTACGATACCGTCGT
TTCAAGCGTAACATCAGGCGCCTCGAACCTATTCATGATTGATGCGCCAG
CTGGCACTGGCAAGACGTACACGGAGAGCATACTGTGCGCCCGTCTCAGG
TCCATGAGCAAATTAGTTTTGTGTGTAGCCAGTACCGGAATTGCCGGACT
TCAATTGCCAGGAGGATGGACAGCGCACTCTATGTTTAAGCTTCCGCTGG
AAGAGAAAAACGTCAGTGGAGCAATGTGTAATATCTCTGCAGAATCACAA
CGAGCGGAAGTGCTACGTAAATGCGACCTTATTGTTTGGGATGAGATTCC
AATGAGTCACCGTTTTTCCGTTGAAGCGCTCAACCTTACACTGCAAGCAG
ACCTATTGGGTAATGACAACATAATGGGAGGAAAAACCGTACTCCTCAGC
GGCGATCTACGTCAAATAGGTCCTGTTGTCAAGCATGGTGGACCAGCTGA
GACTATTGATGCGTCGCTCATATCCAGCCCGCTTTGGCCTCATGTACAAC
GCATGCGACTAACAATTTCACAGCGTGATCGAGAAGACGCCGCGTACGCG
AGCGCAATTTTGTCGTCGACAAATGCCACAATTGACTTAATCAACTCCCA
CGTGCTTGACATTCTGCCCGGGGACATGCTAACGGCATATAGCTGTGACA
CAGTTGACCCTCACGATAATAACCTTGACTTCGTTGCTACGGCTGATCTC
AACGCAATCGACGTTTCAGGCGTGCCGCCACATGCATTGGAGTTGAAGTT
AAACTGCATGGTCATGATAACACGGAACCTCAATTTCAAGCAGGGTTTGG
TCAACGGTCAAAAGGCTATAGTGCGTGGTTACTCAACACGGATTGTGCAT
GTAGAACTCCTTGATGGACTGTCCTCTCTAGTTCTGATACCGCGTATACG
TCTTAATGCAAAAGTTGGGCGGAACGGGATCGCTTTCTCGAGGTTGCAGC
TGCCGCTTCGCGTTTGCTATGCCCTCACGATCAACAAGAGTCAAGGTCAA
ACTGTGCCCAAAATCGGGCTTGACTTGCGGTCACGTTTTCACCCATGGGC
AACTCTACGTAGCACTCAGCAGGGCGCAGAAGAGATCGTCGATTATGTGC
CTCACATTACCCGCGAGGTTGCGTGGTTCCCTAAACCGTACCGCATTTGT
TGCCAACATNTTTCACGCATGGGCAACTCTACGTAG

protein sequence of EsuBft4781_2a-0001

>EsuBft4781_2 ID=EsuBft4781_2|Name=EsuBft4781_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=861bp
MQDDRNRTGVKVCGKRYPQPWRKAAVVNSKNGRAEYRRRDTGEKFPYKHK
VNGKYVESFATNQWIAPYTIWLLSKYNCHMCFDVCTGSAIVKYIYKYINK
GADFIKAKILCDGDEIEAYRSARYISAAEAAWRLLGFHVIERNPSVSSLR
LHLPNEQQIVVDESLSRAEQKVAARASTSDLLLYLGRPTDQTFDSLTYLD
YNEQYIVKKDKARQGTFFRDKFRNYVTPRSSDKHVARRPSDQTFYSLTYL
DYNEQYIVKKDKARQGTFFRDKFRNYVTPRSSDKHVARVSAMSPDKGDVF
YLRLLLHHKPARSFEQLRTHDDTVYDTFQDAARAMGIIKHDDEYRICLQE
AVIFNTGRQLRELFVTLILDGAPAKILWEQFNQDFTEDLRINMSDRDANN
TALRQIDLVLQHHGRTNEVVGLPAVIHLDTEYIRFKHMFDPAQMSAFVDE
HLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLR
SMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLEEKNVSGAMCNISAESQ
RAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQADLLGNDNIMGGKTVLLS
GDLRQIGPVVKHGGPAETIDASLISSPLWPHVQRMRLTISQRDREDAAYA
SAILSSTNATIDLINSHVLDILPGDMLTAYSCDTVDPHDNNLDFVATADL
NAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYSTRIVH
VELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQ
TVPKIGLDLRSRFHPWATLRSTQQGAEEIVDYVPHITREVAWFPKPYRIC
CQHXSRMGNST

mRNA from alignment at Scaffold_647:234590..237644-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4781_2a-0001 ID=EsuBft4781_2a-0001|Name=EsuBft4781_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3055bp|location=Sequence derived from alignment at Scaffold_647:234590..237644- (Ectocarpus subulatus male Bft15b)
ATGCAGGATGATCGCAATCGTACTGGAGTTAAAGTTTGCGGCAAGAGATA
TCCTCAACCATGGCGTAAAGCTGCTGTAGTCAACAGTAAAAACGGGAGAG
CGGAATACCGTCGACGCGACACAGGAGAAAAATTTCCGTACAAGCACAAA
GTTAACGGCAAGTATGTAGAATCTTTCGCTACGAACCAATGGATCGCCCC
GTACACTATATGGCTCCTTTCCAAATACAACTGCCACATGTGTTTCGACG
TGTGCACCGGTAGCGCGATAGTCAAATACATATACAAGTATATAAACAAA
GGTGCTGATTTTATTAAGGCGAAGATTCTATGTGACGGCGACGAGATCGA
GGCATACCGCTCAGCTCGTTACATATCAGCTGCAGAGGCTGCGTGGCGGT
TGCTGGGTTTCCATGTCATCGAACGTAACCCGTCCGTCAGTTCTCTCCGA
CTGCACCTTCCCAACGAACAGCAAATTGTTGTAGACGAATCTCTTTCACG
CGCTGAGCAAAAGGTGGCGGCACGGGCGTCCACGTCCGATCTACTTCTTT
ACTTAGGGAGGCCTACTGACCAAACATTTGATTCGCTTACCTACTTGGAC
TACAATGAACAGTACATCGTCAAGAAAGACAAGGCCCGTCAGGGGACGTT
TTTCAGAGACAAATTCCGCAACTATGTCACACCGCGGTCGTCCGATAAAC
ATGTTGCGCGTGCGTTNTGGCGGCACGGGCGTCCACGTCCGATCTACTTC
TTTACTTAGGGAGGCCTTCTGACCAAACATTTTATTCGCTTACCTACTTG
GACTACAATGAACAGTACATCGTCAAGAAAGACAAGGCCCGTCAGGGGAC
GTTTTTCAGAGACAAATTCCGCAACTATGTCACACCGCGGTCGTCCGATA
AACATGTTGCGCGTGTGTCCGCCATGTCCCCGGACAAAGGTGATGTTTTC
TACTTGCGCCTGCTTCTACACCATAAACCAGCAAGATCTTTCGAACAGTT
GAGAACGCACGATGACACCGTCTACGACACGTTTCAGGACGCCGCCAGAG
CAATGGGAATTATAAAGCACGACGACGAGTACAGAATTTGCTTACAGGAG
GCGGTCATATTTAACACGGGTAGACAACTGCGTGAACTATTCGTTACCCT
TATTCTTGACGGCGCTCCGGCCAAAATATTGTGGGAGCAGTTCAACCAGG
ACTTCACCGAAGATTTGCGAATAAACATGTCTGATCGGGATGCCAACAAC
ACCGCACTCCGCCAAATTGATCTCGTTTTGCAGCACCACGGACGAACGAA
TGAGGTCGTTGGGCTGCCGGCGGTAATCCACCTAGATACCGAATACATAC
GATTTAAACACATGTTCGACCCAGCTCAGATGAGTGCATTCGTTGACGAG
CACTTGGCAAATCTCACCCACGAGCAACGGCATGTGTACGATACCGTCGT
TTCAAGCGTAACATCAGGCGCCTCGAACCTATTCATGATTGATGCGCCAG
CTGGCACTGGCAAGACGTACACGGAGAGCATACTGTGCGCCCGTCTCAGG
TCCATGAGCAAATTAGTTTTGTGTGTATCCAGTACCGGAATTGCCGGACT
TCAATTGCCAGGAGGATGGACAGCGCACTCTATGTTCAAGCTTCCGCTGG
AACAGAAAAACANTCAAGCGTAACATCAGGCGCCTCGAACCTATTCATGA
TTGATGCGCCAGCTGGCACTGGCAAGACGTACACGGAGAGCATACTGTGC
GCCCGTCTCAGGTCCATGAGCAAATTAGTTTTGTGTGTAGCCAGTACCGG
AATTGCCGGACTTCAATTGCCAGGAGGATGGACAGCGCACTCTATGTTTA
AGCTTCCGCTGGAAGAGAAAAACGTCAGTGGAGCAATGTGTAATATCTCT
GCAGAATCACAACGAGCGGAAGTGCTACGTAAATGCGACCTTATTGTTTG
GGATGAGATTCCAATGAGTCACCGTTTTTCCGTTGAAGCGCTCAACCTTA
CACTGCAAGCAGACCTATTGGGTAATGACAACATAATGGGAGGAAAAACC
GTACTCCTCAGCGGCGATCTACGTCAAATAGGTCCTGTTGTCAAGCATGG
TGGACCAGCTGAGACTATTGATGCGTCGCTCATATCCAGCCCGCTTTGGC
CTCATGTACAACGCATGCGACTAACAATTTCACAGCGTGATCGAGAAGAC
GCCGCGTACGTACGCTGCTTTTGTTCGAAATGTCGGTATTGGAACACAAG
CCCACACAACAACAGACGACGGTATCGATGCAGTGCCGTTAGCATATATT
CATGAAGTTCCGGACAGCCCGAAAGATCAGTTTGTCATCGACAACACGGA
CTCATTCGAAGAACTAATTGACTTTTTTACCAAGATATTCTCACCGCCGA
CCCTACCGACTTCAAGGCGAGCGCAATTTTGTCGTCGACAAATGCCACAA
TTGACTTAATCAACTCCCACGTGCTTGACATTCTGCCCGGGGACATGCTA
ACGGCATATAGCTGTGACACAGTTGACCCTCACGATAATAACCTTGACTT
CGTTGCTACGGCTGATCTCAACGCAATCGACGTTTCAGGCGTGCCGCCAC
ATGCATTGGAGTTGAAGTTAAACTGCATGGTCATGATAACACGGAACCTC
AATTTCAAGCAGGGTTTGGTCAACGGTCAAAAGGCTATAGTGCGTGGTTA
CTCAACACGGATTGTGCATGTAGAACTCCTTGATGGACTGTCCTCTCTAG
TTCTGATACCGCGTATACGTCTTAATGCAAAAGTTGGGCGGAACGGGATC
GCTTTCTCGAGGTTGCAGCTGCCGCTTCGCGTTTGCTATGCCCTCACGAT
CAACAAGAGTCAAGGTCAAACTGTGCCCAAAATCGGGCTTGACTTGCGGT
CACGTTTTCACCCATGGGCAACTCTACGTAGCACTCAGCAGGGCGCAGAA
GAGATCGTCGATTATGTGCCTCACATTACCCGCGAGGTTGCGTGGTTCCC
TAAACCGTACCGCATTTGTTGCCAACATNTTTCACGCATGGGCAACTCTA
CGTAG

Coding sequence (CDS) from alignment at Scaffold_647:234590..237644-

>EsuBft4781_2a-0001 ID=EsuBft4781_2a-0001|Name=EsuBft4781_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2586bp|location=Sequence derived from alignment at Scaffold_647:234590..237644- (Ectocarpus subulatus male Bft15b)
ATGCAGGATGATCGCAATCGTACTGGAGTTAAAGTTTGCGGCAAGAGATA
TCCTCAACCATGGCGTAAAGCTGCTGTAGTCAACAGTAAAAACGGGAGAG
CGGAATACCGTCGACGCGACACAGGAGAAAAATTTCCGTACAAGCACAAA
GTTAACGGCAAGTATGTAGAATCTTTCGCTACGAACCAATGGATCGCCCC
GTACACTATATGGCTCCTTTCCAAATACAACTGCCACATGTGTTTCGACG
TGTGCACCGGTAGCGCGATAGTCAAATACATATACAAGTATATAAACAAA
GGTGCTGATTTTATTAAGGCGAAGATTCTATGTGACGGCGACGAGATCGA
GGCATACCGCTCAGCTCGTTACATATCAGCTGCAGAGGCTGCGTGGCGGT
TGCTGGGTTTCCATGTCATCGAACGTAACCCGTCCGTCAGTTCTCTCCGA
CTGCACCTTCCCAACGAACAGCAAATTGTTGTAGACGAATCTCTTTCACG
CGCTGAGCAAAAGGTGGCGGCACGGGCGTCCACGTCCGATCTACTTCTTT
ACTTAGGGAGGCCTACTGACCAAACATTTGATTCGCTTACCTACTTGGAC
TACAATGAACAGTACATCGTCAAGAAAGACAAGGCCCGTCAGGGGACGTT
TTTCAGAGACAAATTCCGCAACTATGTCACACCGCGGTCGTCCGATAAAC
ATGTTGCGCGGAGGCCTTCTGACCAAACATTTTATTCGCTTACCTACTTG
GACTACAATGAACAGTACATCGTCAAGAAAGACAAGGCCCGTCAGGGGAC
GTTTTTCAGAGACAAATTCCGCAACTATGTCACACCGCGGTCGTCCGATA
AACATGTTGCGCGTGTGTCCGCCATGTCCCCGGACAAAGGTGATGTTTTC
TACTTGCGCCTGCTTCTACACCATAAACCAGCAAGATCTTTCGAACAGTT
GAGAACGCACGATGACACCGTCTACGACACGTTTCAGGACGCCGCCAGAG
CAATGGGAATTATAAAGCACGACGACGAGTACAGAATTTGCTTACAGGAG
GCGGTCATATTTAACACGGGTAGACAACTGCGTGAACTATTCGTTACCCT
TATTCTTGACGGCGCTCCGGCCAAAATATTGTGGGAGCAGTTCAACCAGG
ACTTCACCGAAGATTTGCGAATAAACATGTCTGATCGGGATGCCAACAAC
ACCGCACTCCGCCAAATTGATCTCGTTTTGCAGCACCACGGACGAACGAA
TGAGGTCGTTGGGCTGCCGGCGGTAATCCACCTAGATACCGAATACATAC
GATTTAAACACATGTTCGACCCAGCTCAGATGAGTGCATTCGTTGACGAG
CACTTGGCAAATCTCACCCACGAGCAACGGCATGTGTACGATACCGTCGT
TTCAAGCGTAACATCAGGCGCCTCGAACCTATTCATGATTGATGCGCCAG
CTGGCACTGGCAAGACGTACACGGAGAGCATACTGTGCGCCCGTCTCAGG
TCCATGAGCAAATTAGTTTTGTGTGTAGCCAGTACCGGAATTGCCGGACT
TCAATTGCCAGGAGGATGGACAGCGCACTCTATGTTTAAGCTTCCGCTGG
AAGAGAAAAACGTCAGTGGAGCAATGTGTAATATCTCTGCAGAATCACAA
CGAGCGGAAGTGCTACGTAAATGCGACCTTATTGTTTGGGATGAGATTCC
AATGAGTCACCGTTTTTCCGTTGAAGCGCTCAACCTTACACTGCAAGCAG
ACCTATTGGGTAATGACAACATAATGGGAGGAAAAACCGTACTCCTCAGC
GGCGATCTACGTCAAATAGGTCCTGTTGTCAAGCATGGTGGACCAGCTGA
GACTATTGATGCGTCGCTCATATCCAGCCCGCTTTGGCCTCATGTACAAC
GCATGCGACTAACAATTTCACAGCGTGATCGAGAAGACGCCGCGTACGCG
AGCGCAATTTTGTCGTCGACAAATGCCACAATTGACTTAATCAACTCCCA
CGTGCTTGACATTCTGCCCGGGGACATGCTAACGGCATATAGCTGTGACA
CAGTTGACCCTCACGATAATAACCTTGACTTCGTTGCTACGGCTGATCTC
AACGCAATCGACGTTTCAGGCGTGCCGCCACATGCATTGGAGTTGAAGTT
AAACTGCATGGTCATGATAACACGGAACCTCAATTTCAAGCAGGGTTTGG
TCAACGGTCAAAAGGCTATAGTGCGTGGTTACTCAACACGGATTGTGCAT
GTAGAACTCCTTGATGGACTGTCCTCTCTAGTTCTGATACCGCGTATACG
TCTTAATGCAAAAGTTGGGCGGAACGGGATCGCTTTCTCGAGGTTGCAGC
TGCCGCTTCGCGTTTGCTATGCCCTCACGATCAACAAGAGTCAAGGTCAA
ACTGTGCCCAAAATCGGGCTTGACTTGCGGTCACGTTTTCACCCATGGGC
AACTCTACGTAGCACTCAGCAGGGCGCAGAAGAGATCGTCGATTATGTGC
CTCACATTACCCGCGAGGTTGCGTGGTTCCCTAAACCGTACCGCATTTGT
TGCCAACATNTTTCACGCATGGGCAACTCTACGTAG