EsuBft4772_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4772_2a-0001
Unique NameEsuBft4772_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:177129..177524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV58439
ProteomeIdEsuBft4772_2
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length396
Hectar predicted targeting categoryother localisation
Evalue9.97e-26
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0005488
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4772_2aEsuBft4772_2aEctocarpus subulatus male Bft15bgeneScaffold_630 177129..177524 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4772_2a-0001-exonEsuBft4772_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 177129..177524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4772_2a-0001-cdsEsuBft4772_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 177129..177524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4772_2a-0001EsuBft4772_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 177129..177524 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4772_2a-0001 ID=EsuBft4772_2a-0001|Name=EsuBft4772_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_630:177129..177524- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCAGGAGGGGCAATTGCATGGTTCTCCAAGACTCATAAGTGTGT
GACTTTGTCTACCACGCAGGCTGAATACGTGGCAATGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCGAAGGAG
TTGCGGCCATGCATTCCACTGTATGAGGATAACGAAGGTGCTATACAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGCAGTATCAGCATGCCGATTTCCTCACGAAGGCGCTACCTGA
GAAAGAGTTTGTTTTCCACCGGGACTACGTGATGAATTTGAAGTGA
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protein sequence of EsuBft4772_2a-0001

>EsuBft4772_2 ID=EsuBft4772_2|Name=EsuBft4772_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MCAGGAIAWFSKTHKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKE
LRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIH
VASQYQHADFLTKALPEKEFVFHRDYVMNLK
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mRNA from alignment at Scaffold_630:177129..177524-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4772_2a-0001 ID=EsuBft4772_2a-0001|Name=EsuBft4772_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_630:177129..177524- (Ectocarpus subulatus male Bft15b)
ATGTGTGCAGGAGGGGCAATTGCATGGTTCTCCAAGACTCATAAGTGTGT
GACTTTGTCTACCACGCAGGCTGAATACGTGGCAATGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCGAAGGAG
TTGCGGCCATGCATTCCACTGTATGAGGATAACGAAGGTGCTATACAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGCAGTATCAGCATGCCGATTTCCTCACGAAGGCGCTACCTGA
GAAAGAGTTTGTTTTCCACCGGGACTACGTGATGAATTTGAAGTGA
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Coding sequence (CDS) from alignment at Scaffold_630:177129..177524-

>EsuBft4772_2a-0001 ID=EsuBft4772_2a-0001|Name=EsuBft4772_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_630:177129..177524- (Ectocarpus subulatus male Bft15b)
ATGTGTGCAGGAGGGGCAATTGCATGGTTCTCCAAGACTCATAAGTGTGT
GACTTTGTCTACCACGCAGGCTGAATACGTGGCAATGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCGAAGGAG
TTGCGGCCATGCATTCCACTGTATGAGGATAACGAAGGTGCTATACAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGCAGTATCAGCATGCCGATTTCCTCACGAAGGCGCTACCTGA
GAAAGAGTTTGTTTTCCACCGGGACTACGTGATGAATTTGAAGTGA
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