EsuBft471_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft471_8a-0001
Unique NameEsuBft471_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:290313..294080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8Z1
ProteomeIdEsuBft471_8
Protein domainsPTHR24089
Protein domainsIPR023395
Protein domainsIPR018108
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized mitochondrial carrier os:schizosaccharomyces pombe (strain 972 atcc 24843) gn: pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1178
Evalue5.67e-97
EggNOG OGsKOG0760@1|root,KOG0760@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-15_002540.1
Date last modified2016-09-21
Date creation2016-06-15
KEGG koko:K15113
KEGG TC2.A.29.5
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0034755,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048250,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0097286,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:1990542
DescriptionMitochondrial substrate carrier family protein
Descriptioniron import into the mitochondrion
COG categoryU
BRITEko00000,ko02000,ko03029
NoteGroisillier A., annotator
Cross References
External references for this mRNA
DatabaseAccession
TCDB2.A.29...
GO0048250
GO0034755
GO0003824
GO0005381
GO0005739
GO0005794
GO0009792
GO0035162
GO0043249
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft471_8aEsuBft471_8aEctocarpus subulatus male Bft15bgeneScaffold_242 290313..294080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_8a-0001-exonagat-exon-43100Ectocarpus subulatus male Bft15bexonScaffold_242 290313..290953 +
EsuBft471_8a-0001-exonEsuBft471_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 293148..293333 +
EsuBft471_8a-0001-exonagat-exon-43099Ectocarpus subulatus male Bft15bexonScaffold_242 293730..294080 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_8a-0001-exonagat-five_prime_utr-10593Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 290313..290626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_8a-0001-cdsEsuBft471_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 290627..290953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_8a-0001EsuBft471_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 290627..294080 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft471_8a-0001 ID=EsuBft471_8a-0001|Name=EsuBft471_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_242:290313..294080+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCAGCCAACAGCTCCGTTCCGAGAGGTGTGCAAGGCAGCGAGGAGAGGCG
CGCGACCTACGTTCGCCATCTCTGTGTAGCTGCAGCTGACGGAAAGCTTG
GCCTCAACGCTTGAGAGGCCAGGTGTCTCTTTTGGGATCAAGTTTCTCGT
GCCAACGGGCTGCCTGTATAAGCCGCGCACAAGGCGAAAACAGGCCGCCG
CTTCTCTCCCGCTCTCTGCGACGGAGGGCGCCTTCTCGAACCGCAGTTGT
TTCGGTTGACGAGAGACTGGGGGACGGACAGACAGGTTGCGTGAGGGCTA
GGAGAAGTCCATAAATGGCGGAGAGCGGAACCATGGCCGGAGCGTCCTCC
GATTTCAACGAAGACTGGGAAGACTGGGACCCGTCCCAGGGCAACTTTTT
GCACCACATGGTGGCGGGCTCGATCGCGGGTATCACGGAGCACACCGTCA
TGTACCCGGTGGACACCTTCAAGACCTACGTGCAGTGCATGCGTGAGTGC
CCCGAGGCCGTGGCAGGGAGGAGGGTGATGGAGATGGTGCGTGGGCAGGG
CATGCTCCGGCTCTGGCGAGGAGTTGGCACAATGTTCACGGGCTGTGTGC
CGGCACACGCTCTCTACTTCAGCGTCCTCGAGAATTGCAAGGACCGCCTG
GGTGTCAACCAACCCGGGCATCAGCCGGCGGGGGCAGCCGTCGCAGGCGC
GGCGGCGACGGTTTTTCACGACGCGGTGATGACCCCAATGGACGTCGTCA
AGCAGCGCCTGCAGCTGGGCTACCACAAGGGGATGCTGGACTGCGTGTTG
ACTATCCAGCGGACGGAAGGGACGCAGGCTTTTTATCGAAGTTTCCCGAC
GACGTTGTTCATGAACATCCCGTACGGGTGCGTCATGGTGGCCGTGAACG
AGAGCCTGAAGCGCGTCATGCGTCCGGCGGGTGACTACGACGCAAAGACC
TTCCTCCTTGCCGGGAGCGGCGCCGGTGCCATCGCGGCGGTGGCCACGAA
CCCCCTCGACGTCGTCAAGACGCGCTTACAGACGCAAGCGTTCCGGGGTG
TAGCGGCGCCGCAAGCAGCGCGCTCGGAAGGCTTCGCAGCGCCCAAGGAA
GGGGCAGCGGTAGGGGGGAGGGGAGGGATTGTTCTACCGCAGTTCTTGCG
AGCGAGCGGGGGAGCGGCGGGGGGGNNN
back to top

protein sequence of EsuBft471_8a-0001

>EsuBft471_8 ID=EsuBft471_8|Name=EsuBft471_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=288bp
MAESGTMAGASSDFNEDWEDWDPSQGNFLHHMVAGSIAGITEHTVMYPVD
TFKTYVQCMRECPEAVAGRRVMEMVRGQGMLRLWRGVGTMFTGCVPAHAL
YFSVLENCKDRLGVNQPGHQPAGAAVAGAAATVFHDAVMTPMDVVKQRLQ
LGYHKGMLDCVLTIQRTEGTQAFYRSFPTTLFMNIPYGCVMVAVNESLKR
VMRPAGDYDAKTFLLAGSGAGAIAAVATNPLDVVKTRLQTQAFRGVAAPQ
AARSEGFAAPKEGAAVGGRGGIVLPQFLRASGGAAGGX
back to top

mRNA from alignment at Scaffold_242:290313..294080+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft471_8a-0001 ID=EsuBft471_8a-0001|Name=EsuBft471_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3768bp|location=Sequence derived from alignment at Scaffold_242:290313..294080+ (Ectocarpus subulatus male Bft15b)
CCAGCCAACAGCTCCGTTCCGAGAGGTGTGCAAGGCAGCGAGGAGAGGCG
CGCGACCTACGTTCGCCATCTCTGTGTAGCTGCAGCTGACGGAAAGCTTG
GCCTCAACGCTTGAGAGGCCAGGTGTCTCTTTTGGGATCAAGTTTCTCGT
GCCAACGGGCTGCCTGTATAAGCCGCGCACAAGGCGAAAACAGGCCGCCG
CTTCTCTCCCGCTCTCTGCGACGGAGGGCGCCTTCTCGAACCGCAGTTGT
TTCGGTTGACGAGAGACTGGGGGACGGACAGACAGGTTGCGTGAGGGCTA
GGAGAAGTCCATAAATGGCGGAGAGCGGAACCATGGCCGGAGCGTCCTCC
GATTTCAACGAAGACTGGGAAGACTGGGACCCGTCCCAGGGCAACTTTTT
GCACCACATGGTGGCGGGCTCGATCGCGGGTATCACGGAGCACACCGTCA
TGTACCCGGTGGACACCTTCAAGACCTACGTGCAGTGCATGCGTGAGTGC
CCCGAGGCCGTGGCAGGGAGGAGGGTGATGGAGATGGTGCGTGGGCAGGG
CATGCTCCGGCTCTGGCGAGGAGTTGGCACAATGTTCACGGGCTGTGTGC
CGGCACACGCTCTCTACTTCAGCGTCCTCGAGAATTGCAAGGTAAATTAT
CTACCAGCAGAGAGGGACGCATCTACGATGTAAATCCGCCGAGCCTTTTT
GACAGCAGTAATTCGTGGCCAAGCAAGACTGACCGAAGGACCGGTTGCGT
CGGTTTTCTTTTGTGGTGCTGTTGTAGCTGCACGACACGTGAGGGTGGTG
CTCTGGGTCACATGTCTAGAGCAACGCTCCGCCCTGACTGCTTCCGTGGT
TGTATTTTAGTTTTTTTGAAAAATGACGCCAGGCATATCATCTATATGCA
TACGTTGGAGACCAAACCACGCACAAGGTCTGATTTCCAACCAAATTCAG
GAAGTTCGGTGGCACTAACTGACACCCGGCAGATCGAGTAGAGACTCCTT
GAATTCCTCATCGTTGTATACGGGTCATGTGTCTCCGATAGTGTTGGGTA
TCTATGCAATACTAGATTCGATATGATATCGACCGCCTTTTGACCGCGAA
GCCGTCGGTATGTCCGTATCGATACATCGATTTCGATTTGGGCGAGCCGT
TGGTCGGCGCAGCGAGCCGGCGAAGCCCAAGCGACCCCCCCTCTGCTGGT
GAGGGGGCGCCGCTGGAGGCGCCGCCGTAGGCAAATAAAAGAAGCAAATT
CACTTCAGTTGCCATCAATATCACCGCAACACAGACCTCCCGGCAATGCA
GCCAACTGTTCAACAGAAAAAGAAAAAGTATTCGTACAAATTGTTGGTGT
TTCAAAAAGTACATACAGTTCATCATTCCAACTATTGGCACAGCGCTGTT
GCTTCAATGCTCAGTGGTGTCGTACACCATAAAAGAAACAATCTTGTCGC
AAAAGCTAAGCTCTCACAATGAGAGATGGATTGAGAGCAGAGTATGTAGC
TGCCGCTGCTACCCACCTACCGCTAAATGCACGCGTTTCGTGAACTCCTT
CACGGCGTGCATCTGATGCGTGCTGCGTGCTGTGCAGCTGTGGGGGTACC
GTATGGACATCGGGGGTTCCGTGGAGGTTTTATGGATTAAGCGCATCCAT
ATCGAAATATTGGAATATCGTTAAGGCCATTTTTTTTCGATTCCCGATAT
CGATGCGATACGTTGATACGACATACCGAGATATTGATAAGAATCGATAC
GATCTCCTCCACTAGTCTCCTATTTAGTTCTGCTTGCTAGGAATCATTTT
GCTCTCATCGTGGAAAGCATCGGTCACTTTTGTACGCCCTCACACTCCTC
GCACTTGTTTTATCTGGGTAGCAATTCTCGGCGCCAAGCAAAGGGGCGTT
CCGCATGGTGTCCGCGAGATATTGCGTGCATCTTGATTCCTTCCCATTCA
GGAAAGCCCACCATTTTCTGAGCACCAATTTGCACCCAGCCTGCGGGACT
CACGCACCGATCAAAGAACGTCCACAGTGTACAAGCACATCAACGTCTCT
TGATCTCCCGCTCCCCGAGACGCTCCATGGGTTAGAGAGTTGTCTTTGAG
GGTTGTCTTTTATCACCACACTTCAGTACCGCTGGCGCAATTGAACCGCA
AGGGCGACCAGCAGCATGTCGAGCAGTGCCTCTTGCCCACCTAGATAGTA
GTCTAATGACACAGATTGTTTGCTAATTGTTTATTCTCCTGTGTGGTCTC
TCAAACCTAACAGTAGGGAACACGACCTAAATAGGCACGTGATCCTGACA
AGCATCCTCGAGTTATTTTCGCCACAAAGATTCTCCTCGGATAGAGTCAA
GGACGGGTCTTTGGATCGTTCTTTTTCTCCCCCATGAAACTCAAAGGTTA
CGTTTGTGTAAAACTGCAGCCCTGAGCGACATGCATGCACACAGGCTCGT
ATGTGCGAGGGAGCACGTACAGGAACAACATTCCAGCAGACGACTTTGCA
CCCTAACATTCGAGAGCATAGCAGTAGTTTCCCCCCTTCAGTCGGACTCA
ACGTAACGCTTACCCGACGCGCGATTGTCGAGAACTGATCATCACGGCCT
ACATAGAACGCTCGCGGAATGTCAAAAGAGATTGCTGTCAAGTGGATGCA
GCCACTAAATGGCACTGCAGCAGTGTCTTCCTTCTCCACTTGTGTGCGAC
CTTCCTACCTCTTGTGTGATCCCGGCTGATACATAAAAACGTTTACACCA
CGAGGTGTATAGACTAGCGCCAACACACGCACACCCGTTGACGTTTATGC
CCGACTTTTCCCTCATCTCTGCACCGTCTCCGCAGGACCGCCTGGGTGTC
AACCAACCCGGGCATCAGCCGGCGGGGGCAGCCGTCGCAGGCGCGGCGGC
GACGGTTTTTCACGACGCGGTGATGACCCCAATGGACGTCGTCAAGCAGC
GCCTGCAGCTGGGCTACCACAAGGGGATGCTGGACTGCGTGTTGACTATC
CAGCGGACGGAAGGGACGCAGGTGTGTCTGCGTGCCTGTTCATTGTTCAA
GTGAAATTCAATACTAGTGGACGTACTAAATTTTTGTCGCCGCCGCACTA
ACTATACTTCTCTCTTGTTTGTAGCGGGACACAGGCTGCATGTACAGTCC
TCGAACGTGGATGAAAGGATTCTGTCAATTTCAAGCGAGTAGCTGGAGAA
CGAGGACGTTCGAGTGGAGGCGGTATTCGACCCTACTCAAACTGAAAATC
TCTTGGGGTGGACCAAGGCTTGGCGCTGGTCGGTCGGCATCATGGATTGA
AGCTTGCCGCCATGTATCAGAGTACCGCTCGCTCATGTCCCCGCTGTTTT
GCCCCAACATTGGCACCTGAACCCTAAATTTGCACAACCGTCGTTGCTGC
CCCCGCCTGGGAACCAGGCTTTTTATCGAAGTTTCCCGACGACGTTGTTC
ATGAACATCCCGTACGGGTGCGTCATGGTGGCCGTGAACGAGAGCCTGAA
GCGCGTCATGCGTCCGGCGGGTGACTACGACGCAAAGACCTTCCTCCTTG
CCGGGAGCGGCGCCGGTGCCATCGCGGCGGTGGCCACGAACCCCCTCGAC
GTCGTCAAGACGCGCTTACAGACGCAAGCGTTCCGGGGTGTAGCGGCGCC
GCAAGCAGCGCGCTCGGAAGGCTTCGCAGCGCCCAAGGAAGGGGCAGCGG
TAGGGGGGAGGGGAGGGATTGTTCTACCGCAGTTCTTGCGAGCGAGCGGG
GGAGCGGCGGGGGGGNNN
back to top

Coding sequence (CDS) from alignment at Scaffold_242:290313..294080+

>EsuBft471_8a-0001 ID=EsuBft471_8a-0001|Name=EsuBft471_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=864bp|location=Sequence derived from alignment at Scaffold_242:290313..294080+ (Ectocarpus subulatus male Bft15b)
ATGGCGGAGAGCGGAACCATGGCCGGAGCGTCCTCCGATTTCAACGAAGA
CTGGGAAGACTGGGACCCGTCCCAGGGCAACTTTTTGCACCACATGGTGG
CGGGCTCGATCGCGGGTATCACGGAGCACACCGTCATGTACCCGGTGGAC
ACCTTCAAGACCTACGTGCAGTGCATGCGTGAGTGCCCCGAGGCCGTGGC
AGGGAGGAGGGTGATGGAGATGGTGCGTGGGCAGGGCATGCTCCGGCTCT
GGCGAGGAGTTGGCACAATGTTCACGGGCTGTGTGCCGGCACACGCTCTC
TACTTCAGCGTCCTCGAGAATTGCAAGGACCGCCTGGGTGTCAACCAACC
CGGGCATCAGCCGGCGGGGGCAGCCGTCGCAGGCGCGGCGGCGACGGTTT
TTCACGACGCGGTGATGACCCCAATGGACGTCGTCAAGCAGCGCCTGCAG
CTGGGCTACCACAAGGGGATGCTGGACTGCGTGTTGACTATCCAGCGGAC
GGAAGGGACGCAGGCTTTTTATCGAAGTTTCCCGACGACGTTGTTCATGA
ACATCCCGTACGGGTGCGTCATGGTGGCCGTGAACGAGAGCCTGAAGCGC
GTCATGCGTCCGGCGGGTGACTACGACGCAAAGACCTTCCTCCTTGCCGG
GAGCGGCGCCGGTGCCATCGCGGCGGTGGCCACGAACCCCCTCGACGTCG
TCAAGACGCGCTTACAGACGCAAGCGTTCCGGGGTGTAGCGGCGCCGCAA
GCAGCGCGCTCGGAAGGCTTCGCAGCGCCCAAGGAAGGGGCAGCGGTAGG
GGGGAGGGGAGGGATTGTTCTACCGCAGTTCTTGCGAGCGAGCGGGGGAG
CGGCGGGGGGGNNN
back to top