EsuBft471_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft471_18a-0001
Unique NameEsuBft471_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:373766..374587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog126957.SMAR000971-PA
ProteomeIdEsuBft471_18
Protein domainsIPR012337
Protein domainsIPR001584
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length822
Hectar predicted targeting categoryother localisation
Evalue6.61e-29
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria
Date last modified2016-06-15
Date creation2016-06-15
DescriptionEncoded by
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft471_18aEsuBft471_18aEctocarpus subulatus male Bft15bgeneScaffold_242 373766..374587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_18a-0001-exonEsuBft471_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 373766..374587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_18a-0001-cdsEsuBft471_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 373766..374587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_18a-0001EsuBft471_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 373766..374587 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft471_18a-0001 ID=EsuBft471_18a-0001|Name=EsuBft471_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=822bp|location=Sequence derived from alignment at Scaffold_242:373766..374587- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTGGGGCATTCCCCTGAAGACGAAGGATGAAGTGACTGACGCGCT
CGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCATCTGCATCGGGA
AAATCCGTTGCGATGGCGCAGCCGACTTCAAGGGTAGGTTCTTAGCAATG
TGTCGGTCCTTCGGGATCGCCGTGGAGACAAGCCCCCCGTACGTCCCTCA
AGGAAATGCTGTCGCCGAACGCGGTTTCGGGACCGTCATCGGTGCAGCAC
GTAGCCTCATGCTTGGAGCTCTGCACCTGCCGCGTCAACTGTGGGCGGAA
GCCGTCAAGGCCGCCATTTACGTCAAGAACCGCACACCTACTGACGTCCT
GGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACCACTCGGCAGCT
TGAAGCACATGCATGAGTGGGGGTTCGTAGCGTTCAAACACGTGGAAGCT
CGCTCGCGTAACGATAAGTTTTCTGCCAGGGCGAAGAAGTATTACATGGT
GGGATACAATACAACCGACAAGACGTGGCGGCTTTGGGACCCGGCGGAAC
CACTCAAAATTACAAACTCTGCTGAAGTGTCATTCCGCGAGGTAGATGCC
CGCGACGTCGCTCGCCCCATGCACGGGTCTGACCCATTTCCCGAACAAGG
CCAGATTTTCCAGCCCGGCATTATCACTGGGGCCGAAACAAGAGACGAGG
AACCAGACCCGGCAGAACCGAACGACGGACCGGACGAAGAACCGCCCGCG
GTGCGCAAAAGCGGTCGCACGACAAGGCCGCGGGACCGTCTGAACCTGTT
TACGACGGAGCCGGTTTGCTGA
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protein sequence of EsuBft471_18a-0001

>EsuBft471_18 ID=EsuBft471_18|Name=EsuBft471_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=273bp
MRWGIPLKTKDEVTDALETLIKEVADPEGICIGKIRCDGAADFKGRFLAM
CRSFGIAVETSPPYVPQGNAVAERGFGTVIGAARSLMLGALHLPRQLWAE
AVKAAIYVKNRTPTDVLDGKAPLEVWEDKPLGSLKHMHEWGFVAFKHVEA
RSRNDKFSARAKKYYMVGYNTTDKTWRLWDPAEPLKITNSAEVSFREVDA
RDVARPMHGSDPFPEQGQIFQPGIITGAETRDEEPDPAEPNDGPDEEPPA
VRKSGRTTRPRDRLNLFTTEPVC
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mRNA from alignment at Scaffold_242:373766..374587-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft471_18a-0001 ID=EsuBft471_18a-0001|Name=EsuBft471_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=822bp|location=Sequence derived from alignment at Scaffold_242:373766..374587- (Ectocarpus subulatus male Bft15b)
ATGCGGTGGGGCATTCCCCTGAAGACGAAGGATGAAGTGACTGACGCGCT
CGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCATCTGCATCGGGA
AAATCCGTTGCGATGGCGCAGCCGACTTCAAGGGTAGGTTCTTAGCAATG
TGTCGGTCCTTCGGGATCGCCGTGGAGACAAGCCCCCCGTACGTCCCTCA
AGGAAATGCTGTCGCCGAACGCGGTTTCGGGACCGTCATCGGTGCAGCAC
GTAGCCTCATGCTTGGAGCTCTGCACCTGCCGCGTCAACTGTGGGCGGAA
GCCGTCAAGGCCGCCATTTACGTCAAGAACCGCACACCTACTGACGTCCT
GGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACCACTCGGCAGCT
TGAAGCACATGCATGAGTGGGGGTTCGTAGCGTTCAAACACGTGGAAGCT
CGCTCGCGTAACGATAAGTTTTCTGCCAGGGCGAAGAAGTATTACATGGT
GGGATACAATACAACCGACAAGACGTGGCGGCTTTGGGACCCGGCGGAAC
CACTCAAAATTACAAACTCTGCTGAAGTGTCATTCCGCGAGGTAGATGCC
CGCGACGTCGCTCGCCCCATGCACGGGTCTGACCCATTTCCCGAACAAGG
CCAGATTTTCCAGCCCGGCATTATCACTGGGGCCGAAACAAGAGACGAGG
AACCAGACCCGGCAGAACCGAACGACGGACCGGACGAAGAACCGCCCGCG
GTGCGCAAAAGCGGTCGCACGACAAGGCCGCGGGACCGTCTGAACCTGTT
TACGACGGAGCCGGTTTGCTGA
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Coding sequence (CDS) from alignment at Scaffold_242:373766..374587-

>EsuBft471_18a-0001 ID=EsuBft471_18a-0001|Name=EsuBft471_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=822bp|location=Sequence derived from alignment at Scaffold_242:373766..374587- (Ectocarpus subulatus male Bft15b)
ATGCGGTGGGGCATTCCCCTGAAGACGAAGGATGAAGTGACTGACGCGCT
CGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCATCTGCATCGGGA
AAATCCGTTGCGATGGCGCAGCCGACTTCAAGGGTAGGTTCTTAGCAATG
TGTCGGTCCTTCGGGATCGCCGTGGAGACAAGCCCCCCGTACGTCCCTCA
AGGAAATGCTGTCGCCGAACGCGGTTTCGGGACCGTCATCGGTGCAGCAC
GTAGCCTCATGCTTGGAGCTCTGCACCTGCCGCGTCAACTGTGGGCGGAA
GCCGTCAAGGCCGCCATTTACGTCAAGAACCGCACACCTACTGACGTCCT
GGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACCACTCGGCAGCT
TGAAGCACATGCATGAGTGGGGGTTCGTAGCGTTCAAACACGTGGAAGCT
CGCTCGCGTAACGATAAGTTTTCTGCCAGGGCGAAGAAGTATTACATGGT
GGGATACAATACAACCGACAAGACGTGGCGGCTTTGGGACCCGGCGGAAC
CACTCAAAATTACAAACTCTGCTGAAGTGTCATTCCGCGAGGTAGATGCC
CGCGACGTCGCTCGCCCCATGCACGGGTCTGACCCATTTCCCGAACAAGG
CCAGATTTTCCAGCCCGGCATTATCACTGGGGCCGAAACAAGAGACGAGG
AACCAGACCCGGCAGAACCGAACGACGGACCGGACGAAGAACCGCCCGCG
GTGCGCAAAAGCGGTCGCACGACAAGGCCGCGGGACCGTCTGAACCTGTT
TACGACGGAGCCGGTTTGCTGA
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