EsuBft471_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft471_14a-0001
Unique NameEsuBft471_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:337139..340171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft471_14
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length221
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft471_14aEsuBft471_14aEctocarpus subulatus male Bft15bgeneScaffold_242 337139..340171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_14a-0001EsuBft471_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 337751..339924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_14a-0001-exonEsuBft471_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 337139..337186 -
EsuBft471_14a-0001-exonagat-exon-43117Ectocarpus subulatus male Bft15bexonScaffold_242 337517..337958 -
EsuBft471_14a-0001-exonagat-exon-43118Ectocarpus subulatus male Bft15bexonScaffold_242 338170..338466 -
EsuBft471_14a-0001-exonagat-exon-43119Ectocarpus subulatus male Bft15bexonScaffold_242 338744..340171 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_14a-0001-exonagat-three_prime_utr-16648Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 337139..337186 -
EsuBft471_14a-0001-exonagat-three_prime_utr-16649Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 337517..337750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_14a-0001-cdsEsuBft471_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 337751..337958 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_14a-0001-exonagat-five_prime_utr-10587Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 339925..340171 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft471_14a-0001 ID=EsuBft471_14a-0001|Name=EsuBft471_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2215bp|location=Sequence derived from alignment at Scaffold_242:337139..340171- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATATATCACCAACTCTGCGAAGGGATCTTTCAATGCTAAATTGGTTCAGA
TTGACAGCCGTTGATTGGACAGCAGTCTACACACACGTCATCCGAACCAG
CTTTTTTACAAGCGAGCGGCGGCGAGGTGTGCTCGTGCTCGAAGCTGCTG
GGTCGCGTGCTTTCTCGCACACGGTGGCGTCCGCCACAGCTCACCCCACC
CATAAAGGTTGTAGAAGCACGCATCCGCCTAGCGAACCATTCGGCCGATG
GCTTCTCCCCACGGAAGCGGAGGAGGAGGCACAGGCCAGCCACATAGCGG
CACCACATCCAGCAGCAGTTCGTGGGATCATGCTGCGACTGCCGGTCCCC
ACCCTGCACCCGGAGAGCTCGAGCGCGAACACCTTGTCTCTCACGCGATC
AACGGACAGGAGATGGTGGATACCTTCCAGCAAGCAGCAGCGTCGCAGCA
AGGCTCTAGCAGCACTTGCCATCAACCCCACGCGTGGAATTCCAGCTCAA
CGGCCGGCCCCGACAACGTTTCGCGCAATTTTCTTGGTGCCGGGGATGAG
GGCGGGAGCCAACAACAGACCCAACCAAGCGCCTGCGATGCCGTCCCGAC
TAGTATCAACGGCGGTATACCTCGGGTGGAGCTCAGCAGCAGCTCGCGTG
GAGTGGGACTCCACAACCCGCAGCATCTGGGGTGGATGCAGACAAGGGCG
TATCAACACGGCCATTCATCACATAACGGCCTTACCGCTGCTGTCATGGC
ATCGCAGCAGCCATCGCAGGCGCCAAGGGCGGTGGGGACGTTTGTGGGTA
TGCCCGATGGCACAGATGCTGGAATGGCAGCACCGCATGCTGTGCGTGTG
CCTCTCTCCTCTGCTCTTGGGCAGGCAGGTGCGACGGAACTCGAAAATTT
CGGAATTGCGGGAATGGGCGCATCGGGGGTTGGAGCTCGGGGCGGGCAAG
GGGCGGCGTGGGAAGGATCGGCGTGGGAAGGATCGGGAGCAGCGGGATCG
GGAGCAGCGGGAGGATTGGTGGCTTCATCCGTTGCTGCTTCTCTGCATTT
TTCGGCGCAGGCGGCCGGTGGGGTGGTGATCCAGCCACCTCTCCCAGCGG
ACAGTGGCGCACGTGATGAACTTGATGCGCCACTGCCTCTGTTTGCAGCA
CCCGGTGGCGACGGAGCCGGCGACGAGGAAGAGGAGGAAGAAGATGACAG
CGTTGCTGACAGGGCCCCGATCGCGATCTCCATACCAGATGGGTTCTCTC
TGAAGGCACGCAGCTGGTGCTGTGGGAGAAGTGAAACGATTCGGTCTATA
TGCAGCAAGTGCAATGCCCGATGGCATTGCCACATCTCCCATGGGTTCAT
CGATATGGACAAAGATCGCTTCATCTGCTGTTTTTGCGACGGGGGGGGTC
GGACTCAGTCGGGATGTAAATGTAAAAGGCACTCGGAAAACTTGAGGGTC
AGGGCCAATTCCGCAAGACGCGCACAAGACGGAATCGTACGACGGAGCGC
CGTTGAGAGAACGGCGACGCGGCGGAAGCCAGCGACCAGCGCTTTCAAGC
TCCCGGTCCAGCTCGACCCCCTGGTCGCAGGAGATAGCTCCAGCGGGGGG
CTAAAGGCGGTGTACTCTGTTTCCACGACCGCTCGGGGTGACCGCTACAC
CGTCATCACGAACTTCGACCCCCAGCAGCCTGGCAGCTACAAGATTGTCT
GCTGCAACAACGAATGCACCTCCACTGTCCACGCGCAGGAACCCGACCTC
GCTGAAAACGTTCAGCGAAGGGCCGTCGCCCGGTGTGAGCACACCATCGT
AGTCGTTGGAAGCGAGACGGTCCCAGTTATGACGGCAGACATTCCTGACG
CCGAGCCTGTCGTCTTCGGTAAGGATGGAGAAGGCTTCGAAGCCGTGGCT
AACCAAGCAGCGAACGAGCTGAAGCTGGGGTGAAGCGGTCTGGAGAACGT
TTTGCGAATGGCGGCGATCGCCGAGGGGCATGGGATGCCGTTGTTGGTGC
GCTTCGGCGAGACCAGGAGCTACGCCGTGTACCATCCAGGGCACCGATCT
ATTGCTGAAGGCTGGGCGGTGGTGTTGTGCGAAGTCGACCTGCAAGGTGG
AGCTGGTGGTGCACGAACGAGCAGGAGGACACCCACGAAGAAGAGTTCCC
AAAGTTTCCGATGCAAGGCTAACGGAGCGACGCCATGCGGTGTAGCGAGG
AAGTCTACGCGTGGC
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protein sequence of EsuBft471_14a-0001

>EsuBft471_14 ID=EsuBft471_14|Name=EsuBft471_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=561bp
MASPHGSGGGGTGQPHSGTTSSSSSWDHAATAGPHPAPGELEREHLVSHA
INGQEMVDTFQQAAASQQGSSSTCHQPHAWNSSSTAGPDNVSRNFLGAGD
EGGSQQQTQPSACDAVPTSINGGIPRVELSSSSRGVGLHNPQHLGWMQTR
AYQHGHSSHNGLTAAVMASQQPSQAPRAVGTFVGMPDGTDAGMAAPHAVR
VPLSSALGQAGATELENFGIAGMGASGVGARGGQGAAWEGSAWEGSGAAG
SGAAGGLVASSVAASLHFSAQAAGGVVIQPPLPADSGARDELDAPLPLFA
APGGDGAGDEEEEEEDDSVADRAPIAISIPDGFSLKARSWCCGRSETIRS
ICSKCNARWHCHISHGFIDMDKDRFICCFCDGGGRTQSGCKCKRHSENLR
VRANSARRAQDGIVRRSAVERTATRRKPATSAFKLPVQLDPLVAGDSSSG
GLKAVYSVSTTARGDRYTVITNFDPQQPGSYKIVCCNNECTSTVHAQEPD
LAENVQRRAVARCEHTIVVVGSETVPVMTADIPDAEPVVFGKDGEGFEAV
ANQAANELKLG
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mRNA from alignment at Scaffold_242:337139..340171-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft471_14a-0001 ID=EsuBft471_14a-0001|Name=EsuBft471_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3033bp|location=Sequence derived from alignment at Scaffold_242:337139..340171- (Ectocarpus subulatus male Bft15b)
ATATATCACCAACTCTGCGAAGGGATCTTTCAATGCTAAATTGGTTCAGA
TTGACAGCCGTTGATTGGACAGCAGTCTACACACACGTCATCCGAACCAG
CTTTTTTACAAGCGAGCGGCGGCGAGGTGTGCTCGTGCTCGAAGCTGCTG
GGTCGCGTGCTTTCTCGCACACGGTGGCGTCCGCCACAGCTCACCCCACC
CATAAAGGTTGTAGAAGCACGCATCCGCCTAGCGAACCATTCGGCCGATG
GCTTCTCCCCACGGAAGCGGAGGAGGAGGCACAGGCCAGCCACATAGCGG
CACCACATCCAGCAGCAGTTCGTGGGATCATGCTGCGACTGCCGGTCCCC
ACCCTGCACCCGGAGAGCTCGAGCGCGAACACCTTGTCTCTCACGCGATC
AACGGACAGGAGATGGTGGATACCTTCCAGCAAGCAGCAGCGTCGCAGCA
AGGCTCTAGCAGCACTTGCCATCAACCCCACGCGTGGAATTCCAGCTCAA
CGGCCGGCCCCGACAACGTTTCGCGCAATTTTCTTGGTGCCGGGGATGAG
GGCGGGAGCCAACAACAGACCCAACCAAGCGCCTGCGATGCCGTCCCGAC
TAGTATCAACGGCGGTATACCTCGGGTGGAGCTCAGCAGCAGCTCGCGTG
GAGTGGGACTCCACAACCCGCAGCATCTGGGGTGGATGCAGACAAGGGCG
TATCAACACGGCCATTCATCACATAACGGCCTTACCGCTGCTGTCATGGC
ATCGCAGCAGCCATCGCAGGCGCCAAGGGCGGTGGGGACGTTTGTGGGTA
TGCCCGATGGCACAGATGCTGGAATGGCAGCACCGCATGCTGTGCGTGTG
CCTCTCTCCTCTGCTCTTGGGCAGGCAGGTGCGACGGAACTCGAAAATTT
CGGAATTGCGGGAATGGGCGCATCGGGGGTTGGAGCTCGGGGCGGGCAAG
GGGCGGCGTGGGAAGGATCGGCGTGGGAAGGATCGGGAGCAGCGGGATCG
GGAGCAGCGGGAGGATTGGTGGCTTCATCCGTTGCTGCTTCTCTGCATTT
TTCGGCGCAGGCGGCCGGTGGGGTGGTGATCCAGCCACCTCTCCCAGCGG
ACAGTGGCGCACGTGATGAACTTGATGCGCCACTGCCTCTGTTTGCAGCA
CCCGGTGGCGACGGAGCCGGCGACGAGGAAGAGGAGGAAGAAGATGACAG
CGTTGCTGACAGGGCCCCGATCGCGATCTCCATACCAGATGGGTTCTCTC
TGAAGGCACGCAGCTGGTGCTGTGGGAGAAGTGAAACGATTCGGTCTATA
TGCAGCAAGTGCAATGCCCGATGGCATTGCCACATCTCCCATGGGTTCAT
CGATATGGACAAAGATCGCTTCATCTGCTGTTTTTGCGACGGGGGGGGTC
GGACTCAGTCGGGATGTAAATGTAAAAGGTGAGCAAGTTTTTTCCGCATT
TCGCATTTCCGTCTTCTGCGATTCCATGCCGCCGTTTGATGGGTTCCGCG
CGCAAGAGCAATCAGGGTCGGTACCAAAGGGACAATGTATGCAAGGTTCG
TTCAACATTGTGCAGTGTGTATTGAATCAAAAAACGTATAACATGCCACG
CCTCCGACTTGTTCGTTTCCGTCTGACAACTCTTCTCTGACGTTTGCTGT
GGACCTTACCACCATCGATTCTCGTCGCCGCCACGCTCCGCATTTCATGA
TCCAGGCACTCGGAAAACTTGAGGGTCAGGGCCAATTCCGCAAGACGCGC
ACAAGACGGAATCGTACGACGGAGCGCCGTTGAGAGAACGGCGACGCGGC
GGAAGCCAGCGACCAGCGCTTTCAAGCTCCCGGTCCAGCTCGACCCCCTG
GTCGCAGGAGATAGCTCCAGCGGGGGGCTAAAGGCGGTGTACTCTGTTTC
CACGACCGCTCGGGGTGACCGCTACACCGTCATCACGAACTTCGACCCCC
AGCAGCCTGGCAGCTACAAGATTGTCTGCTGCAACAACGAATGCACCTCC
ACGTAAGTAGGTTTTGAGGAATACGGAAATGCAGTTAGGTTCAACCCCGG
CCATTTTGAGTTTCTCGTTTCTCGTATCGAAGCTAAGAAATTTGAATGCT
TTCCCGGACCTATGTTCATGAGCTACTAGAGTGCGTGCGATCAATGCTCT
ACAGGTGGTCATCTTCGATTGAATCTACATGTATTTTTTTCTTCGTGATT
TCGTGATTCGCAGTGTCCACGCGCAGGAACCCGACCTCGCTGAAAACGTT
CAGCGAAGGGCCGTCGCCCGGTGTGAGCACACCATCGTAGTCGTTGGAAG
CGAGACGGTCCCAGTTATGACGGCAGACATTCCTGACGCCGAGCCTGTCG
TCTTCGGTAAGGATGGAGAAGGCTTCGAAGCCGTGGCTAACCAAGCAGCG
AACGAGCTGAAGCTGGGGTGAAGCGGTCTGGAGAACGTTTTGCGAATGGC
GGCGATCGCCGAGGGGCATGGGATGCCGTTGTTGGTGCGCTTCGGCGAGA
CCAGGAGCTACGCCGTGTACCATCCAGGGCACCGATCTATTGCTGAAGGC
TGGGCGGTGGTGTTGTGCGAAGTCGACCTGCAAGGTGGAGCTGGTGGTGC
ACGAACGAGCAGGAGGACACCCACGAAGAAGAGTTCCCAAAGTTTCCGAT
GCAAGGTATCATCCGTCCGACGTAGTAGTGGGGAACGTACATGCTCGAAT
GTAGACTGTTTTAGAGTCGTGGTGGTCTGGACGTACACGTGTGTCATGTT
TGGTGGAACTCAGAGGTATACCTGCGTGCTATGTACGCTCGGAACAGAGT
GGTGTTTCTGACGAACGGGCTGAGATGGCTCAAGTCTTCGTCGCCTCCAG
CTTGAAACACTCAGCCACAAGGCAAGGCGTTATGATGTGGCTGTTGCCGC
AATTTACGATTCCTGACCAACCATATGATTAAATGGCATGGTTTCTCTAC
CCCCGTTTGATCCCCTATGTCCTTTGGTTGGCTAGGCTAACGGAGCGACG
CCATGCGGTGTAGCGAGGAAGTCTACGCGTGGC
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Coding sequence (CDS) from alignment at Scaffold_242:337139..340171-

>EsuBft471_14a-0001 ID=EsuBft471_14a-0001|Name=EsuBft471_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1686bp|location=Sequence derived from alignment at Scaffold_242:337139..340171- (Ectocarpus subulatus male Bft15b)
ATGGCTTCTCCCCACGGAAGCGGAGGAGGAGGCACAGGCCAGCCACATAG
CGGCACCACATCCAGCAGCAGTTCGTGGGATCATGCTGCGACTGCCGGTC
CCCACCCTGCACCCGGAGAGCTCGAGCGCGAACACCTTGTCTCTCACGCG
ATCAACGGACAGGAGATGGTGGATACCTTCCAGCAAGCAGCAGCGTCGCA
GCAAGGCTCTAGCAGCACTTGCCATCAACCCCACGCGTGGAATTCCAGCT
CAACGGCCGGCCCCGACAACGTTTCGCGCAATTTTCTTGGTGCCGGGGAT
GAGGGCGGGAGCCAACAACAGACCCAACCAAGCGCCTGCGATGCCGTCCC
GACTAGTATCAACGGCGGTATACCTCGGGTGGAGCTCAGCAGCAGCTCGC
GTGGAGTGGGACTCCACAACCCGCAGCATCTGGGGTGGATGCAGACAAGG
GCGTATCAACACGGCCATTCATCACATAACGGCCTTACCGCTGCTGTCAT
GGCATCGCAGCAGCCATCGCAGGCGCCAAGGGCGGTGGGGACGTTTGTGG
GTATGCCCGATGGCACAGATGCTGGAATGGCAGCACCGCATGCTGTGCGT
GTGCCTCTCTCCTCTGCTCTTGGGCAGGCAGGTGCGACGGAACTCGAAAA
TTTCGGAATTGCGGGAATGGGCGCATCGGGGGTTGGAGCTCGGGGCGGGC
AAGGGGCGGCGTGGGAAGGATCGGCGTGGGAAGGATCGGGAGCAGCGGGA
TCGGGAGCAGCGGGAGGATTGGTGGCTTCATCCGTTGCTGCTTCTCTGCA
TTTTTCGGCGCAGGCGGCCGGTGGGGTGGTGATCCAGCCACCTCTCCCAG
CGGACAGTGGCGCACGTGATGAACTTGATGCGCCACTGCCTCTGTTTGCA
GCACCCGGTGGCGACGGAGCCGGCGACGAGGAAGAGGAGGAAGAAGATGA
CAGCGTTGCTGACAGGGCCCCGATCGCGATCTCCATACCAGATGGGTTCT
CTCTGAAGGCACGCAGCTGGTGCTGTGGGAGAAGTGAAACGATTCGGTCT
ATATGCAGCAAGTGCAATGCCCGATGGCATTGCCACATCTCCCATGGGTT
CATCGATATGGACAAAGATCGCTTCATCTGCTGTTTTTGCGACGGGGGGG
GTCGGACTCAGTCGGGATGTAAATGTAAAAGGCACTCGGAAAACTTGAGG
GTCAGGGCCAATTCCGCAAGACGCGCACAAGACGGAATCGTACGACGGAG
CGCCGTTGAGAGAACGGCGACGCGGCGGAAGCCAGCGACCAGCGCTTTCA
AGCTCCCGGTCCAGCTCGACCCCCTGGTCGCAGGAGATAGCTCCAGCGGG
GGGCTAAAGGCGGTGTACTCTGTTTCCACGACCGCTCGGGGTGACCGCTA
CACCGTCATCACGAACTTCGACCCCCAGCAGCCTGGCAGCTACAAGATTG
TCTGCTGCAACAACGAATGCACCTCCACTGTCCACGCGCAGGAACCCGAC
CTCGCTGAAAACGTTCAGCGAAGGGCCGTCGCCCGGTGTGAGCACACCAT
CGTAGTCGTTGGAAGCGAGACGGTCCCAGTTATGACGGCAGACATTCCTG
ACGCCGAGCCTGTCGTCTTCGGTAAGGATGGAGAAGGCTTCGAAGCCGTG
GCTAACCAAGCAGCGAACGAGCTGAAGCTGGGGTGA
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