EsuBft471_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft471_10a-0001
Unique NameEsuBft471_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:316950..319445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft471_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length53
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft471_10aEsuBft471_10aEctocarpus subulatus male Bft15bgeneScaffold_242 316950..319445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_10a-0001EsuBft471_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 316950..318985 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_10a-0001-exonagat-exon-43106Ectocarpus subulatus male Bft15bexonScaffold_242 316950..316955 +
EsuBft471_10a-0001-exonagat-exon-43104Ectocarpus subulatus male Bft15bexonScaffold_242 317288..317369 +
EsuBft471_10a-0001-exonagat-exon-43102Ectocarpus subulatus male Bft15bexonScaffold_242 317964..318036 +
EsuBft471_10a-0001-exonEsuBft471_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 318317..318499 +
EsuBft471_10a-0001-exonagat-exon-43103Ectocarpus subulatus male Bft15bexonScaffold_242 318961..319102 +
EsuBft471_10a-0001-exonagat-exon-43105Ectocarpus subulatus male Bft15bexonScaffold_242 319401..319445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_10a-0001-cdsEsuBft471_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 316950..316955 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft471_10a-0001-exonagat-three_prime_utr-16643Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 318986..319102 +
EsuBft471_10a-0001-exonagat-three_prime_utr-16644Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 319401..319445 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft471_10a-0001 ID=EsuBft471_10a-0001|Name=EsuBft471_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=531bp|location=Sequence derived from alignment at Scaffold_242:316950..319445+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTGGAGACGCGTCGAATTCCCTTGCGGTCAGAGTGGTACACCGG
ACCTCCGGACGCAAACGACGAAGACAGCAACGAAGAAGCGGAACTCTTCA
AGCTGCTGCTCACAACCAGGCACATGTACACGTACATGGCGGAGTACGTT
TTTGAACCAAGGCGGATACAGCGGTGGGCTTCGTTTGCGCAGCCTGGGCT
CCACACGCTCAGCAATGTCTCCACGCAGCGAGTGGAAGCGACCAACAGTG
CGTTGAAGACGGCGATGGACAGGTCGGGGAGTATGGATGACGTACATGAC
GCCATCGTGGGCAAGGTCCAGGACGACGCCAACAAAAGCTTAAGGCAAAC
CGCTGGGGGCGCGGTCTAACGCGTGCGCCAACCGACTGCCACGCCCTTTG
AAAGAGTGAAGGACAGATGGCTGGGAGATTTCGACTTCGTCCGGCAGGGT
ACGCGTCACGCGAAATGTAGCGCCTTCGCTATGAAGGACATGTCGGCCGA
GGCCTTGGCGGTTATGGTCTACAAGGCCGAG
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protein sequence of EsuBft471_10a-0001

>EsuBft471_10 ID=EsuBft471_10|Name=EsuBft471_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=122bp
MKVETRRIPLRSEWYTGPPDANDEDSNEEAELFKLLLTTRHMYTYMAEYV
FEPRRIQRWASFAQPGLHTLSNVSTQRVEATNSALKTAMDRSGSMDDVHD
AIVGKVQDDANKSLRQTAGGAV
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mRNA from alignment at Scaffold_242:316950..319445+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft471_10a-0001 ID=EsuBft471_10a-0001|Name=EsuBft471_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2496bp|location=Sequence derived from alignment at Scaffold_242:316950..319445+ (Ectocarpus subulatus male Bft15b)
ATGAAGGTAGGAGGAGGGTGCACCGCGAGCAACGCCGTTGGAGAGTTTTG
GACCCTAGCTGTGATCAACAGCCGGCTGGAAACAGGTGGTTCGGCCCTGC
GCCCTATCGCAGGCTGTTGCGGGGCGCTACCGCACTTTCCTGTTGCTCGT
CACTGAAAGCACAAAGGGCGGAGCGTGCGCGCATGTGTTGCACTTGCCCA
CCAGCAGCGAAACTTTTTGTGACGGATACCATCATTGAAGTTGTGTTGCA
CACCCACCAGTGACATGTCAAAGTCCGCCTCGCTGTCCTTCCAGCTTGTC
CCTGCAGCCCAGGAGCAAGCTCGGCTGACGAAGAACAGGTGGAGACGCGT
CGAATTCCCTTGCGGTCAGAGTGGTACACCGGACCTCCGGACGCAAACGA
CGAAGACAGCAACGAAGAAGGTGGTTCTGTAGTTAAATCCTATGTTGAGT
AGAGCTTGCCGACGCTGTTGTTTTTATGGTTAGCCAGGTCTGTTTGCGGT
TGGACGGAAAAAATCGAGGGTCAACTCGTACTGCAATGTAGGAAGACCCT
CGCCCTGATGAAACAATCCACAATAGTCGGATGGAAACCCCCTTGCTGTG
GAGTCTAAATTCCTCTAGCAATTAAGAACACTTGTTGTGCGTCGTTTTAG
TTTTTTTTTGTAGATTTATATGGAACGGAAACACTAGCGCGCTCTCATCT
TCATGTCCACGTGTGCTCGCTCTGGAAGTACTACAAAATCCACAAGTATG
AAGGCGCGGGCTGTATTCTGAAGGCCCTGTTTTCTTTGTTGCTGTCTTTC
CTCGTCCTCGGCAAAGCACATCGAAAAGGCTTGTGGTGCGTGCAGACGGT
GCATCATTGGAGCATGCATTTGCAGCTTTTCTTAGTTCTTTCCTGATAGC
TTTTCAGGTAAGAGCTTGAACGTGCAGTTCCCTCCGCCGCCCCGCCCGAT
TCCCCCCTCGCGCTCGCCTCTTCCGCGCATTTCTCGACGTCACAAATGTT
CCTTCACCACAAAGCGGAACTCTTCAAGCTGCTGCTCACAACCAGGCACA
TGTACACGTACATGGCGGAGTACGTTTTTGAACCAAGGTAAGCAGTGTCT
GGCACGGCAGCAGCCGAGGTACGGATGCACAATCGGCAATCTCCCAAGAC
CTTCCCCGGGGAAATCTTCGTCTGTTGCGGTTGCTCCCCCGGGTGCCTTG
TTGTTCTCCCAGCTTATGTGGACTTTGCCCGCCCCCCTGGGAACCTCTGC
GACCCGTTGTGTTTGGTTGTTCAACTTGTTCGCTGATTAGCTACTTGTCG
TTCAGCGTTGCACGAGTAGCTTTCCTCGCCTTTGACCCCGTGGCTTCCTT
CCCGCCGCACGTAACAGGCGGATACAGCGGTGGGCTTCGTTTGCGCAGCC
TGGGCTCCACACGCTCAGCAATGTCTCCACGCAGCGAGTGGAAGCGACCA
ACAGTGCGTTGAAGACGGCGATGGACAGGTCGGGGAGTATGGATGACGTA
CATGACGCCATCGTGGGCAAGGTCCAGGACGACGCCAACAAAAGCTTAAG
GTGAGCATGTTATTGATTTGGCGTTCATTTTTCAAGGTCGTTGTCTTCGT
TGTCTTCGTTGCGTCTCAATCGACTGCAGAAATGGCGTGAGGCGACGGCT
TGTATGCTATAAAATATTGTGGCCAACCGCGCACAAGGGGAAAGGTTCTG
GCCTGCCCATAGAATATCTTCCACCATTTGAAAACCAGCGTGCGTCCCCA
GGGCCGTCTGTCGACAGCGACTATAGCGACGAAGCATGTCTAAACATGTG
TCGTTCCATGTAACGATAGTCATCTTAGGTCGTAAGACTGGCCCGTGCAA
TCACGGCATGGAGTCAACATTGCACATCCACTCGCGAGGTCCATGCCCCG
GCGGTCCACCGCTTCATTACTTGGGGCCTCGCAAAATGCGTGTTGTTATC
CCGTCATCAACTAATTCCACCTTCTACCCGCCTTCTTGCTACTGGCTCGT
GCGCTTTGAAGGCAAACCGCTGGGGGCGCGGTCTAACGCGTGCGCCAACC
GACTGCCACGCCCTTTGAAAGAGTGAAGGACAGATGGCTGGGAGATTTCG
ACTTCGTCCGGCAGGGTACGCGTCACGCGAAATGTAGCGCCTTCGCTATG
AAGGTCAGTTTTTTGCGTTCGTAGGTCTGCTGAGGGAAGAACCTTTCGGG
CATCGCTCCTCTCTGGCCCCGCACCGTTCATCATTCCCTCCCCGCCCACC
CGTGCGACCCTGCCGTACTTCTCTATTGGTATGCCTACCGTAGAGCGCGG
CAACAGTGATATCTGCGAGCTTTGCACGGCACCCAATGATACTGTTGGGT
GAAGATAGGTGAAGACCGTGCAGTTTCAATGCCTTGATTTCTTTCCTCCC
GCCCCCTTGCTCGTACACCGGCTTCACGTTGTCGTTCCGTAAAATTTGCA
GGACATGTCGGCCGAGGCCTTGGCGGTTATGGTCTACAAGGCCGAG
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Coding sequence (CDS) from alignment at Scaffold_242:316950..319445+

>EsuBft471_10a-0001 ID=EsuBft471_10a-0001|Name=EsuBft471_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=369bp|location=Sequence derived from alignment at Scaffold_242:316950..319445+ (Ectocarpus subulatus male Bft15b)
ATGAAGGTGGAGACGCGTCGAATTCCCTTGCGGTCAGAGTGGTACACCGG
ACCTCCGGACGCAAACGACGAAGACAGCAACGAAGAAGCGGAACTCTTCA
AGCTGCTGCTCACAACCAGGCACATGTACACGTACATGGCGGAGTACGTT
TTTGAACCAAGGCGGATACAGCGGTGGGCTTCGTTTGCGCAGCCTGGGCT
CCACACGCTCAGCAATGTCTCCACGCAGCGAGTGGAAGCGACCAACAGTG
CGTTGAAGACGGCGATGGACAGGTCGGGGAGTATGGATGACGTACATGAC
GCCATCGTGGGCAAGGTCCAGGACGACGCCAACAAAAGCTTAAGGCAAAC
CGCTGGGGGCGCGGTCTAA
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