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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXA8 |
| ProteomeId | EsuBft468_7 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR24188 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR002110 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | IPR020683 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | ankyrin repeat domain-containing protein 50 os:homo sapiens gn:ankrd50 pe:1 sv:4 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 813 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.17e-38 |
| EggNOG OGs | COG0666@1|root,KOG4177@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K21440 |
| GOs | GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259 |
| Description | spectrin binding |
| COG category | I |
| BRITE | ko00000,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft468_7a-0001 ID=EsuBft468_7a-0001|Name=EsuBft468_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=813bp|location=Sequence derived from alignment at Scaffold_189:373797..374707+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCACCTTCCCCGACCGTGCCACGCCAGAGCAGTGGGCCGAGTGGCT
TCGGGTGCCGCTCGAGCACGCCGCCGCACAGGGCAGCCTGGTGCTGGTGG
ACAAGTTGCTCGGAGCCGGGGCGGACGGGAGCGCCAATTATAAGGGCTGT
GCCGGGCGAATTCTCCGGCAGGCTGCCGCTGTCGGTGGAAGCAAAGGCGT
GGTGTCCTCCTTGCTTCGAGCACGAGCTCAGCCAGACGTGAACGAGTTCG
TTGATGATTTGAGCGTGCTACATGAGGGCCATCAACCCTTTCCCAACTTT
CGCTCGCCGCTGTACCAGGCAACACTGAACGGCCACGAGGCTACTGCGAG
GCTACCCATTCTGGCTGGCGCGAATGTCAACTTCGTGGACCTCTGGGGAG
GGCATAGTGTGATTATGAGCGGGGCGGACGTGCGGGCACACGACTCGCAC
GATCGCACCCCTCTTCATCTGGCAACTATGGAAGGCTTGGACGGGATTGT
CTCCCCCCTCGTGTTCCGGGGGGTGGACAAGGATGCAGTGGATAAATATG
GACGTTCTGCGTTAATCATCGCGTCCTGTGTTGGTGACAAGGCTCACTCG
ACTGTCGACGAGACTCTTTTGGCCGCTGGTGCTGACTTAAGCATCCGAAA
TAACTTTCGAGCTTCGGCTCTGGACTCGGCTTCTTTACATGGGCACGTTC
CCACTATACACGCTCTCGTTCGGCATGGGGTGGCAATTCTTGTGATGACC
GCGGCGACAGCGCTCTGCACAAGGCTGCTTTCCAAAATCAGGCGGGTTCG
GTCGACGCCCTGA back to topprotein sequence of EsuBft468_7a-0001 >EsuBft468_7 ID=EsuBft468_7|Name=EsuBft468_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=270bp
MSTFPDRATPEQWAEWLRVPLEHAAAQGSLVLVDKLLGAGADGSANYKGC
AGRILRQAAAVGGSKGVVSSLLRARAQPDVNEFVDDLSVLHEGHQPFPNF
RSPLYQATLNGHEATARLPILAGANVNFVDLWGGHSVIMSGADVRAHDSH
DRTPLHLATMEGLDGIVSPLVFRGVDKDAVDKYGRSALIIASCVGDKAHS
TVDETLLAAGADLSIRNNFRASALDSASLHGHVPTIHALVRHGVAILVMT
AATALCTRLLSKIRRVRSTP back to topmRNA from alignment at Scaffold_189:373797..374707+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft468_7a-0001 ID=EsuBft468_7a-0001|Name=EsuBft468_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_189:373797..374707+ (Ectocarpus subulatus male Bft15b)
ATGAGCACCTTCCCCGACCGTGCGTCCCTGGAAGGACTGGAGATCGAGAT
CTTGAAAATAGTCTCGAAGGTGCCACGCCAGAGCAGTGGGCCGAGTGGCT
TCGGGTGCCGCTCGAGCACGCCGCCGCACAGGGCAGCCTGGTGCTGGTGG
ACAAGTTGCTCGGAGCCGGGGCGGACGGGAGCGCCAATTATAAGGGCTGT
GCCGGGCGAATTCTCCGGCAGGCTGCCGCTGTCGGTGGAAGCAAAGGCGT
GGTGTCCTCCTTGCTTCGAGCACGAGCTCAGCCAGACGTGAACGAGTTCG
TTGATGATTTGAGCGTGCTACATGAGGGCCATCAACCCTTTCCCAACTTT
CGCTCGCCGCTGTACCAGGCAACACTGAACGGCCACGAGGCTACTGCGAG
GCTACCCATTCTGGCTGGCGCGAATGTCAACTTCGTGGACCTCTGGGGAG
GGCATAGTGTACTCCACCAAGCTATTTAAGGCGGTCATGAACGGCTCGCG
AACGAGGTGATTATGAGCGGGGCGGACGTGCGGGCACACGACTCGCACGA
TCGCACCCCTCTTCATCTGGCAACTATGGAAGGCTTGGACGGGATTGTCT
CCCCCCTCGTGTTCCGGGGGGTGGACAAGGATGCAGTGGATAAATATGGA
CGTTCTGCGTTAATCATCGCGTCCTGTGTTGGTGACAAGGCTCACTCGAC
TGTCGACGAGACTCTTTTGGCCGCTGGTGCTGACTTAAGCATCCGAAATA
ACTTTCGAGCTTCGGCTCTGGACTCGGCTTCTTTACATGGGCACGTTCCC
ACTATACACGCTCTCGTTCGGCATGGGGTGGCAATTCTTGTGATGACCGC
GGCGACAGCGCTCTGCACAAGGCTGCTTTCCAAAATCAGGCGGGTTCGGT
CGACGCCCTGA back to topCoding sequence (CDS) from alignment at Scaffold_189:373797..374707+ >EsuBft468_7a-0001 ID=EsuBft468_7a-0001|Name=EsuBft468_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=813bp|location=Sequence derived from alignment at Scaffold_189:373797..374707+ (Ectocarpus subulatus male Bft15b)
ATGAGCACCTTCCCCGACCGTGCCACGCCAGAGCAGTGGGCCGAGTGGCT
TCGGGTGCCGCTCGAGCACGCCGCCGCACAGGGCAGCCTGGTGCTGGTGG
ACAAGTTGCTCGGAGCCGGGGCGGACGGGAGCGCCAATTATAAGGGCTGT
GCCGGGCGAATTCTCCGGCAGGCTGCCGCTGTCGGTGGAAGCAAAGGCGT
GGTGTCCTCCTTGCTTCGAGCACGAGCTCAGCCAGACGTGAACGAGTTCG
TTGATGATTTGAGCGTGCTACATGAGGGCCATCAACCCTTTCCCAACTTT
CGCTCGCCGCTGTACCAGGCAACACTGAACGGCCACGAGGCTACTGCGAG
GCTACCCATTCTGGCTGGCGCGAATGTCAACTTCGTGGACCTCTGGGGAG
GGCATAGTGTGATTATGAGCGGGGCGGACGTGCGGGCACACGACTCGCAC
GATCGCACCCCTCTTCATCTGGCAACTATGGAAGGCTTGGACGGGATTGT
CTCCCCCCTCGTGTTCCGGGGGGTGGACAAGGATGCAGTGGATAAATATG
GACGTTCTGCGTTAATCATCGCGTCCTGTGTTGGTGACAAGGCTCACTCG
ACTGTCGACGAGACTCTTTTGGCCGCTGGTGCTGACTTAAGCATCCGAAA
TAACTTTCGAGCTTCGGCTCTGGACTCGGCTTCTTTACATGGGCACGTTC
CCACTATACACGCTCTCGTTCGGCATGGGGTGGCAATTCTTGTGATGACC
GCGGCGACAGCGCTCTGCACAAGGCTGCTTTCCAAAATCAGGCGGGTTCG
GTCGACGCCCTGA back to top
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