EsuBft468_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft468_5a-0001
Unique Name	EsuBft468_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:359812..365583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft468_5
Protein domains	Coil
Protein domains	PF14223
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	549
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft468_5a	EsuBft468_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 359812..365583 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_5a-0001	EsuBft468_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 359812..361257 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_5a-0001-exon	agat-exon-28077	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 359812..360205 +
EsuBft468_5a-0001-exon	agat-exon-28078	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 360440..365262 +
EsuBft468_5a-0001-exon	EsuBft468_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 365311..365583 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_5a-0001-cds	EsuBft468_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 359812..360205 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_5a-0001-exon	agat-three_prime_utr-16578	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 361258..365262 +
EsuBft468_5a-0001-exon	agat-three_prime_utr-16579	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 365311..365583 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:359812..365583+
coding sequence from alignment at Scaffold_189:359812..365583+

spliced messenger RNA

>EsuBft468_5a-0001 ID=EsuBft468_5a-0001|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5490bp|location=Sequence derived from alignment at Scaffold_189:359812..365583+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGCATCGACCTCTCCGCCCTTAGCGAGGAAGAGGTACAGCAAGA
AGTGGAGGAGATCGTCCAGCAACGAGTGCAAGCCGAACTCGAAGCCAACA
GGATAAACGAGGGTGAAGTCACCTACGCCCCACCACCTGCCGGCAACCCG
GTCCCACCTACCGGCAGCCAGCCATCACCCTCCAGCCAGGGTAAAACACC
TTCCTTCAACGACCCCAGCAGCGTCGCACACATCGTGGCGCAAGCGGCCA
AGGCGACAGCTGAGGCCATCGCTGAACAACAGGGCTTTGCCCGCTCAGGC
ACGTTACGTGTAAATCCAGGCTCAGAAATCGAACCTTGGCTTGGTAGTGT
GAAGAAGGAGCAGGATCTGTACATTATGTTTGATATTTTTCGTGTGACAG
AGTTCTACCAGGAGAAAAAGCAGTCAGAAAAGTCGAGGTTGGAGCAGGAC
TGGAAGCAGTTGGAGATGAAAGAGTCCGAGAGTCCACAGGATTACATTGC
CCGCTCAGAGGCCCTTCGCCTGCGTCTCGCATCTGTAGGCACGATTAAGG
ATGAAACAGATGCCAACAAAGACATTGCTCGTGGCCTTCCCTCTTCGTTG
TATGCCGTGCAAAAAGGAATACTGCTTGCCCATGATGTCCTGACGTTGCG
TACCCTTGAGACTGTGGTGAGGGACGCCCACGTGGAGATGGAGCGCGAGA
GGAGCAAGGGGGAGAGGCGCGAGGTGGAGCTCGCTCTCGCCGCGTCCGGC
ATGGGCCGGCGCGGCGGGGGCAGTGGGGGGGCATCCGGGGGTCAAGACGG
GGGTCACGCAGCAGCTGGCGGCCAAAATCGTGACGGAGAGAAGAAAAATA
GTGACATGTTCAACGACGAACCCGGCGGATTTTGCCGCTACCACCAGTCC
GAGCTTCACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGC
GCGTTCGATAGAGGGCGCCAAGGAACGCCGCTCGGGCGGTGGCAGCCGCG
GTGGCGGCGGTAGCCAGCGAGGAGGTAGACCGCCGCCGGGGCCCGGCCGC
GGTGGCGGGCGATGGGTGAGGATAGAAGGGCAGCAGCACCACACCGGTCA
TGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCCCCGAGGCCTCTTCGTG
GACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCC
GCGGGACGCNNNNNNNNNNNNNNNNNNATAGTTCTGTTCTCGGCAGCGCC
TGGCGAGGGGTCCGTCCCCGGAGATCTCTACTCACAGCCCGGGATTCTAC
GAGCCGAGAGTGTATCTTTTGATAGTATTTGGTAAACCATTTGTCTAGTC
ATCGATGACTGTGCACGTAGTCAAATGGTCAGCCTTTAGCGAATAAGGAG
ATGAAAGTGGTCGCGAGTCTGAGTTTCAACTTGTTTTCGACACATGCTGT
TTCCCTTCGGCAACGAATAATCCATGACGAGCGTGGTGTGACCCTGCGTA
ACGGACTGCTGTTTGCTAGAGAGGAGAAAGCTTCTGCCGCCTATGCAATG
CGCATGCCTTACGACCCGTCTGCGATTGTGGTAGACTCTGCTGCCTTGCC
TGCCTTCGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AATTTCGGTCATTCACGTGCCGTCGCCGTACCAGCGTGCAGACTTCCTTA
CGAAGAGTTTGTCGAAGGATGCTTTCGAGTCTCACCGTGATTTTGTGATG
AATTTGGCATGAACATTTTGTTGTTTTTCTGATAGGTTGTATTTTGGTTT
TGGTTTGTTTCTCGTTTTGTTTCCCGTTTTCTTTCATTTCCCGCGCCAAG
TATTTGTTACGCGCGATGCAGCATTCATATTCCTTTGAATTGTTTTTCTT
TCTCTTATGTTATTCTGTCTTGGTGGCATATCGTCTGGGAAAGACGTCTT
TTGGTTGAGATATCGGGTGTTAGCGAAGTTTTCAGTGAGAGACTGTTGCG
AGCAGGGGGGATGTTAGATATACTCGCAGCAGTATCTGGTCGTGAGGATC
CCAGGGGATACGTGTTGGAAATTTCGTGTGTAGTAGGGTACCACCGGTGC
AGTCACGGGGATCCTTTTGGCGTGGTTGGTGCGATGGAGCTTGCGTGCTT
TTTGCGCACTTCTTCTTCCCTCTCTCTCTCCACCACCACC

protein sequence of EsuBft468_5a-0001

>EsuBft468_5 ID=EsuBft468_5|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MEGIDLSALSEEEVQQEVEEIVQQRVQAELEANRINEGEVTYAPPPAGNP
VPPTGSQPSPSSQGKTPSFNDPSSVAHIVAQAAKATAEAIAEQQGFARSG
TLRVNPGSEIEPWLGSVKKEQDLYIMFDIFRVTEFYQEKKQSEKSRLEQD
WKQLEMKESESPQDYIARSEALRLRLASVGTIKDETDANKDIARGLPSSL
YAVQKGILLAHDVLTLRTLETVVRDAHVEMERERSKGERREVELALAASG
MGRRGGGSGGASGGQDGGHAAAGGQNRDGEKKNSDMFNDEPGGFCRYHQS
ELHTNEQCRLQQQLRRARSIEGAKERRSGGGSRGGGGSQRGGRPPPGPGR
GGGRWVRIEGQQHHTGHGGGGWSQASPPPRPLRGRGPGGRLGRHPGGRGP
AGRX

mRNA from alignment at Scaffold_189:359812..365583+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft468_5a-0001 ID=EsuBft468_5a-0001|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5772bp|location=Sequence derived from alignment at Scaffold_189:359812..365583+ (Ectocarpus subulatus male Bft15b)
ATGGAGGGCATCGACCTCTCCGCCCTTAGCGAGGAAGAGGTACAGCAAGA
AGTGGAGGAGATCGTCCAGCAACGAGTGCAAGCCGAACTCGAAGCCAACA
GGATAAACGAGGGTGAAGTCACCTACGCCCCACCACCTGCCGGCAACCCG
GTCCCACCTACCGGCAGCCAGCCATCACCCTCCAGCCAGGGTAAAACACC
TTCCTTCAACGACCCCAGCAGCGTCGCACACATCGTGGCGCAAGCGGCCA
AGGCGACAGCTGAGGCCATCGCTGAACAACAGGGCTTTGCCCGCTCAGGC
ACGTTACGTGTAAATCCAGGCTCAGAAATCGAACCTTGGCTTGGTAGTGT
GAAGAAGGAGCAGGATCTGTACATTATGTTTGATATTTTTCGTGGTAAGA
TGATTTCATATTTTCAGGAGGAGGGTGTGCACGATGCGTTGGAACTGGAG
GTTGAGGTCAAGGTCGGGAAGAGAGGTGTGAATGTAGGAGACCTTCGGAG
ACTTTTTGGTAATGAAGTGGTAGACAAATCTTTCAAATTGTGGAATATCC
TTATCAGCAAGGTTTTGTATCCCCCGATTCAGAGCTTGATTCTGGCGTGT
GAGAGTCCTCAAAAAGGCTGGAAAATAGTGACAGAGTTCTACCAGGAGAA
AAAGCAGTCAGAAAAGTCGAGGTTGGAGCAGGACTGGAAGCAGTTGGAGA
TGAAAGAGTCCGAGAGTCCACAGGATTACATTGCCCGCTCAGAGGCCCTT
CGCCTGCGTCTCGCATCTGTAGGCACGATTAAGGATGAAACAGATGCCAA
CAAAGACATTGCTCGTGGCCTTCCCTCTTCGTTGTATGCCGTGCAAAAAG
GAATACTGCTTGCCCATGATGTCCTGACGTTGCGTACCCTTGAGACTGTG
GTGAGGGACGCCCACGTGGAGATGGAGCGCGAGAGGAGCAAGGGGGAGAG
GCGCGAGGTGGAGCTCGCTCTCGCCGCGTCCGGCATGGGCCGGCGCGGCG
GGGGCAGTGGGGGGGCATCCGGGGGTCAAGACGGGGGTCACGCAGCAGCT
GGCGGCCAAAATCGTGACGGAGAGAAGAAAAATAGTGACATGTTCAACGA
CGAACCCGGCGGATTTTGCCGCTACCACCAGTCCGAGCTTCACACCAACG
AGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGCGCGTTCGATAGAGGGC
GCCAAGGAACGCCGCTCGGGCGGTGGCAGCCGCGGTGGCGGCGGTAGCCA
GCGAGGAGGTAGACCGCCGCCGGGGCCCGGCCGCGGTGGCGGGCGATGGG
TGAGGATAGAAGGGCAGCAGCACCACACCGGTCATGGTGGCGGTGGCTGG
AGCCAAGCCTCACCCCCCCCGAGGCCTCTTCGTGGACGTGGGCCTGGTGG
TCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCCGCGGGACGCNNNNNNN
NNNNNNNNNNNATAGTTCTGTTCTCGGCAGCGCCTGGCGAGGGGTCCGTC
CCCGGAGATCTCTACTCACAGCCCGGGATTCTACGAGCCGAGAGTGTATC
TTTTGATAGTATTTGGTAAACCATTTGTCTAGTCATCGATGACTGTGCAC
GTAGTCAAATGGTCAGCCTTTAGCGAATAAGGAGATGAAAGTGGTCGCGA
GTCTGAGTTTCAACTTGTTTTCGACACATGCTGTTTCCCTTCGGCAACGA
ATAATCCATGACGAGCGTGGTGTGACCCTGCGTAACGGACTGCTGTTTGC
TAGAGAGGAGAAAGCTTCTGCCGCCTATGCAATGCGCATGCCTTACGACC
CGTCTGCGATTGTGGTAGACTCTGCTGCCTTGCCTGCCTTCGTGANNNNN
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NNNNNNNNNNNNNNNNNNNNNNAGAGAGGAAGGAAATTTCGGTCATTCAC
GTGCCGTCGCCGTACCAGCGTGCAGACTTCCTTACGAAGAGTTTGTCGAA
GGATGCTTTCGAGTCTCACCGTGATTTTGTGATGAATTTGGCATGAACAT
TTTGTTGTTTTTCTGATAGGTTGTATTTTGGTTTTGGTTTGTTTCTCGTT
TTGTTTCCCGTTTTCTTTCATTTCCCGCGCCAAGTATTTGTTACGCGCGA
TGCAGCATTCATATTCCTTTGAATTGTTTTTCTTTCTCTTATGTTATTCT
GGTAAAGTCTTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGT
CTTGGTGGCATATCGTCTGGGAAAGACGTCTTTTGGTTGAGATATCGGGT
GTTAGCGAAGTTTTCAGTGAGAGACTGTTGCGAGCAGGGGGGATGTTAGA
TATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAGGGGATACGTGTTGG
AAATTTCGTGTGTAGTAGGGTACCACCGGTGCAGTCACGGGGATCCTTTT
GGCGTGGTTGGTGCGATGGAGCTTGCGTGCTTTTTGCGCACTTCTTCTTC
CCTCTCTCTCTCCACCACCACC

Coding sequence (CDS) from alignment at Scaffold_189:359812..365583+

>EsuBft468_5a-0001 ID=EsuBft468_5a-0001|Name=EsuBft468_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1212bp|location=Sequence derived from alignment at Scaffold_189:359812..365583+ (Ectocarpus subulatus male Bft15b)
ATGGAGGGCATCGACCTCTCCGCCCTTAGCGAGGAAGAGGTACAGCAAGA
AGTGGAGGAGATCGTCCAGCAACGAGTGCAAGCCGAACTCGAAGCCAACA
GGATAAACGAGGGTGAAGTCACCTACGCCCCACCACCTGCCGGCAACCCG
GTCCCACCTACCGGCAGCCAGCCATCACCCTCCAGCCAGGGTAAAACACC
TTCCTTCAACGACCCCAGCAGCGTCGCACACATCGTGGCGCAAGCGGCCA
AGGCGACAGCTGAGGCCATCGCTGAACAACAGGGCTTTGCCCGCTCAGGC
ACGTTACGTGTAAATCCAGGCTCAGAAATCGAACCTTGGCTTGGTAGTGT
GAAGAAGGAGCAGGATCTGTACATTATGTTTGATATTTTTCGTGTGACAG
AGTTCTACCAGGAGAAAAAGCAGTCAGAAAAGTCGAGGTTGGAGCAGGAC
TGGAAGCAGTTGGAGATGAAAGAGTCCGAGAGTCCACAGGATTACATTGC
CCGCTCAGAGGCCCTTCGCCTGCGTCTCGCATCTGTAGGCACGATTAAGG
ATGAAACAGATGCCAACAAAGACATTGCTCGTGGCCTTCCCTCTTCGTTG
TATGCCGTGCAAAAAGGAATACTGCTTGCCCATGATGTCCTGACGTTGCG
TACCCTTGAGACTGTGGTGAGGGACGCCCACGTGGAGATGGAGCGCGAGA
GGAGCAAGGGGGAGAGGCGCGAGGTGGAGCTCGCTCTCGCCGCGTCCGGC
ATGGGCCGGCGCGGCGGGGGCAGTGGGGGGGCATCCGGGGGTCAAGACGG
GGGTCACGCAGCAGCTGGCGGCCAAAATCGTGACGGAGAGAAGAAAAATA
GTGACATGTTCAACGACGAACCCGGCGGATTTTGCCGCTACCACCAGTCC
GAGCTTCACACCAACGAGCAGTGTCGTCTCCAGCAGCAACTGCGGCGCGC
GCGTTCGATAGAGGGCGCCAAGGAACGCCGCTCGGGCGGTGGCAGCCGCG
GTGGCGGCGGTAGCCAGCGAGGAGGTAGACCGCCGCCGGGGCCCGGCCGC
GGTGGCGGGCGATGGGTGAGGATAGAAGGGCAGCAGCACCACACCGGTCA
TGGTGGCGGTGGCTGGAGCCAAGCCTCACCCCCCCCGAGGCCTCTTCGTG
GACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCC
GCGGGACGCNNN