EsuBft468_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft468_14a-0001
Unique NameEsuBft468_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:442566..447089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog248742.XP_005651074.1
ProteomeIdEsuBft468_14
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsPF05529
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl3041|Chlorophyta
Length141
Hectar predicted targeting categorysignal anchor
Evalue0.000258
EggNOG OGsCOG2940@1|root,KOG4443@2759|Eukaryota,382I6@33090|Viridiplantae,34NZ2@3041|Chlorophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004620.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionhistone methyltransferase activity (H3-K4 specific)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft468_14aEsuBft468_14aEctocarpus subulatus male Bft15bgeneScaffold_189 442566..447089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_14a-0001EsuBft468_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 443475..447010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_14a-0001-exonagat-exon-28141Ectocarpus subulatus male Bft15bexonScaffold_189 442566..443761 -
EsuBft468_14a-0001-exonEsuBft468_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 444882..444919 -
EsuBft468_14a-0001-exonagat-exon-28143Ectocarpus subulatus male Bft15bexonScaffold_189 446146..446198 -
EsuBft468_14a-0001-exonagat-exon-28142Ectocarpus subulatus male Bft15bexonScaffold_189 446963..447089 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_14a-0001-exonagat-three_prime_utr-16566Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 442566..443474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_14a-0001-cdsEsuBft468_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 443475..443761 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_14a-0001-exonagat-five_prime_utr-10527Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 447011..447089 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft468_14a-0001 ID=EsuBft468_14a-0001|Name=EsuBft468_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1414bp|location=Sequence derived from alignment at Scaffold_189:442566..447089- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACCACAACCGCTTGTCACTCCCCTCCTTGTCCTGCTTCTCTCTCTGTC
ACCTTCTTCGAACACGCAGCAGCATTACGATGGCGTCAAACAATTTGTGG
CCGATGCTCATCAAAATCATATTTCCGATACCAGCGAGCTTCTTGCTTTT
GATTTGTTTGCCTCTGTCAACCCAAAGCAGGATAATGCGATGGACGCGCC
GTCTCTACGACAAGATCTTCTCTTTCCAGGTGATGAGCATCCCCCTCATC
TACCTCATCATGGCGGCCTCCTGCGCCCTCTTCGCCGCCATGTGCCTCGA
GACCTACGGCCTGCGCGTGCGGGAGGTGAACGCGACGCAGTTCGACGAGA
AGATGAACCTGCGGGGCCGCCGCTGGAGGGCCGAGCGCAACTTCTACATC
TCCTTCATGTTCCTCTCGTGCTCCGTGCTGGCGAACCGGGTGCGGCTCAT
GCTTAAGGAGGTGGACTCGCTCACCGAGCAGATTCGAGAGATGCGCAAGA
GATGACCATCGGTGGAGAAATGACCGGCCGGGGACGGCGTTGCTAGAAGT
TTTGGTCATGTGTTTTTGTTTTCACTACAGGGCGGTGTGTCTTACTAGTG
GTGCGTTTCGTATTTCGTATTCTATCTGTTGGTGTGTGTTTTTTTGTGAT
GTTGTGAGGTGTGTTTATTTGTGGTACTGTTTAACGATGCAGCACTCGAG
GGACACAAAGAGAGAGAGACGATGACGCCAGTCGTGCCCTTAGCTCCCTC
GGCACAAGATGGTACAACTGTCAGTTAACACAAGAAGGCGAGTAGGGTGT
TCCAACAACGGGTGGACGTCGACATGGGGAGGGATGATGCCGAGAAGGGT
CTATTACATAGCGCAAGAGGTGGTCTTGCACACCTATCGAGTGGTCATGC
TTGTACGTACCGGTGACCCCTCTTCGTAACTTGTGGAGTGAGACCATTGA
CTCGAACAAGCAAGGAAGTGCTTTCATGAACTTCGATGGATGTGATTTCT
TTCTTTCGCTGCATACACGACCATCGCCCTCTCGTCTAAACGGGAAAGAG
ATGGCTCGGTCAACACCAACCCGTCTTAATCTAGCTGAAAGCGAGTGAGT
GTATGGGGAAGCCTATCGGCATGGCTACTACTACTGCGGCGCGCGCTCGA
CACCTGTTTTCATCGGTTTTCTTTCGAGCTTTACTAGCACAAGGGGGATT
GATGGCAGCGATGGAGTCAAGATTATGTGCAGTCTTGTTCCTATCGGAAG
GAACGACGTGCTGCTCCTGTCCCTTTGTATCGCTCTCTTTTTCTTCGTCG
CTCTCGAGCATGTGCATGTTCGTCTAGCCAAGGAAAGCGTGAGGTAATCT
TCGGTTGACGCGCGCGGTACGCGTCTTCTTGGCCGCACGAGGAATGATAC
GACCCTTTTGCTCG
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protein sequence of EsuBft468_14a-0001

>EsuBft468_14 ID=EsuBft468_14|Name=EsuBft468_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=141bp
MASNNLWPMLIKIIFPIPASFLLLICLPLSTQSRIMRWTRRLYDKIFSFQ
VMSIPLIYLIMAASCALFAAMCLETYGLRVREVNATQFDEKMNLRGRRWR
AERNFYISFMFLSCSVLANRVRLMLKEVDSLTEQIREMRKR
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mRNA from alignment at Scaffold_189:442566..447089-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft468_14a-0001 ID=EsuBft468_14a-0001|Name=EsuBft468_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4524bp|location=Sequence derived from alignment at Scaffold_189:442566..447089- (Ectocarpus subulatus male Bft15b)
GTACCACAACCGCTTGTCACTCCCCTCCTTGTCCTGCTTCTCTCTCTGTC
ACCTTCTTCGAACACGCAGCAGCATTACGATGGCGTCAAACAATTTGTGG
CCGATGCTCATCAAAATCATATTTCCGGTAAGAGAGAAAGAGAGAGCACA
TGTCGACGGCGGTGAAAAACGTCTGTGTAGTTGCTGCTGTTGCGCTGCGG
CCGTTAATTAATGGAACAAATCTTGCAGAAGTACGACGTTGTCTACGACG
CTAGAACATGCGGTGAACAAGTGCTTGAACCACATTAGGTTCCATGTCAC
GAATGATAGTCTGTCTTGGCGTGGGTGCGTTTTCACGAAGACGCGTGGCC
ATTCCCGAGCACACCACAGCAGTCCTTGCAGCAGTCCGCTGGTTTGTCCG
CGTGGAACGTTCCGCAAAAACACACGGACCAATCAATCACAAACCCGACT
CAGTTTCAGCAGTCGTGTTGACACGTTCCACCCCACGGCTGTGAATTGTG
GGATGTGTCGACGATAATGGTTACAGCAGGTGAGAGCCTACAACCGCTGA
CTTCGGACCCTTCAGATACGCCGGAACAACGCTGTCTCGACGCTCTCTCT
TGCTCTCACCAGTCTCCTTCTCCACTTTAGTATATATGAGTATATAGTTT
ATGTACCCACTCTATTGCAGCTGCTACATACCCACCCACGTGCTGCACCG
CCGTTTGCTTGCACTACTGCTGTAGGATACCGCCGAGGCAATTGCCCACT
GCTGCTGCTCTCCACCATGAATAATTGTGCTCATGTCTTGGCTGACGATT
GCCGCCATTCTGCTCTGTGACCGCTGCTCTTGCCGCCGCTGCCGTTTCCC
TGCTGTGTCGGTTGTTGCATGCTTCGGGAAAATCACGGCAGATACCAGCG
AGCTTCTTGCTTTTGATTTGTTTGCCTCTGTCAACCCAAAGCAGGTGAAA
GATGCCGGCACTATCATGTTAGTCCGCCCGAAGCAGAGTTATCTCCTCAA
CTCCATGTGAAGTATCAGGCGTGATCGCCTTCGTAAGAATCTGTACGCCA
ATCATGAGAATCGCGCAACGGCCGAACGCGCCCTGTGTCAATTTTCCCCA
CGCCCTCCCCTCGGCGTGTGTGCCTTCTTCGTGCTGAACTGTTCGAACTC
ATAGGAAACGCCTTTGTGTGAGGATGTTGAGGAAACACCTTGATTCGGGT
TTGCGCGAAAAGCGAAACAAGGCTTTCTTAACCTTAGCACAATATAGTGC
CGTTTGTGATTTCGTTGTCCGCAAGCCATGCCGTAGACATGCCCTACGGT
CTTGTCGCGTAGTACGCTTGAAATCACGTACCACCACCTTCAGCATAGGA
CGCCTGATTTCAGGCATCCGTGGACTGCCGCACAGCAAGAATTCCGTGTG
TAGATTCCTCGTCACTACTCCACCCCCAGACCATCCGCCGTATCACCATC
CTTCCTGTTAAACGATGGCCTCTGCCCCCAGCATAGCTCTCACCTCGCGT
TCGTCTCTCGCGACTGTTGAGGAATTCACGATCATTTGTTAGTACACTCG
CACCTCAAGCCAAGTGAGATGCCAGGGTGAGCAGAAACGAAGTCACCATT
CGGGTCAATCTTTAGGGGCGCGAAGGGCCCGTTTCAAAAGTCGCGGCCAG
CATGAACACAGAGCCGACTTGGCACCCGACAGCGGGTATGCCCCGACGGT
AACCTACTCTGCGGAGGTGGTGGCTGCGAGCAACAAGATGATGGTGATAT
TTTCACGTTCGGGGTGTAAACGAAGGGCTCTGTAAACCCGAAGGTTAAGG
TTGAGTAGGAGTTCCCCTGTCTTCTCAGGCAGAGAATGTAGTCAGAGAAC
CTTCTGTGTGCCGACCTTCAATCAGGCAGTTGGTGGCGTACCCACACCGT
GGAATAAGTTTCGGGCTTTTCGGCCCTCGACTGAGGACTTTGGGGTGGCC
GTGCGTCACTTCTGCTCCGCCTCCTTAGGCCTTTTGCGCTGCCCTCTTTC
TTGGCAAGACACAACAACACTTCATGCGTGCTCAAAATTGTCACTTAACA
TTGTCGCTTCGAACGTCATTTCTTACTTTCTGTCGTTGCTGCTGATCTCC
TGCTCGTGTCGTTTTGGGTAACCGCCCGTTATTTCGCGGACTTCGGAAAC
ACGTCTTCGCCATCAACAAGGATAATGCGATGGACGCGCCGTCTCTACGA
CAAGATCTGTGAGTTCACCCTTGTATTTGTTAACGGTCACCTTTCCGTGC
GATCATCTTTGTCCGACTGACGCCAACCATACGGAAGCCGCCAATCGGGA
AGCCGCCAGTCTCGATGCGGCGAAACCGACGCCAAATCGAGCTCCATTCC
GCGGCGTCCTCCAACTTGGGAGGGGGCGGCGGAGGAGACTGCTTGTGTAC
ATGCTTCTTGCACTAGCAGGGAGTACCCCTTGAGACCCGCTGGCCAACGC
CGCTTTTGTGTCTCCGATGTGATCGCCATGCGTTTGCGCGTTGTGTGCAC
TCCATTTTTTGTTTGATTCGATAGGATGTAACACTCTCCAGACTACGGCT
GGACCGTTTTGGGATAGCTGCATCGTGAGGACGTGGGGCGGTCGATGTGT
TCATCTTCAGCACCTGCTTTGCACCTTACAATGACACACCAGATAGAGGT
TGATCGAATTGCATTCTCGTACTAAAGCAAGATCTACAACACCCAACGAA
CGGACTTGGCATCAGTTAAGGTTCCGCGCCGAGGGGGGTACAGGTTCCTC
AAAAAGAAAAATCTCACTTCGAGCCCGCGACCTACAGTCGACGGTCCCAT
AAAAAAAAAAAAAAGTCGACGGTCCATAGCGTTTTTTTCTAGCGCGTGAG
CAAGGAGGCCGAGGACAGCTGGAGCGATTGCGCCTTTTTCTCGGACACCT
GCTGTATGTTTACTGCTGTTCTCACAGCATGGTCTTATTGGAATGTTCTC
GTGTAGTAGGTCTCACTGGATATATCCATGCGCTCATCCGCGCTCGGCTC
TTTCATTTCCCACCGCTCGACCCCGCGGAACTATCGACCATGTCATGTCT
TAAAGTGAGACAATGTGCGACGGGGAAGGCACAACAGTCCTAATACTGTA
TTAGTGCATCCGTGTCTACGGGATGGGCCGGAATAGGATAGGTTCCGGCC
GGCGTGTCATGTCCCACCCATGTCTCCTGGCTCTTTGGTGAGTCTTCCGT
GTTAACCCACCGCTGCGCTCGTGGAGCCTCCTCCTCTGTTACAATGGTAT
ATGTTCTTCGTCGCCCCCCGTCTTGTGTGCTACAGTGCTAACTATTCTGT
GTGCCCCCCCCTTTCGTTCGCGCCGCAGTCTCTTTCCAGGTGATGAGCAT
CCCCCTCATCTACCTCATCATGGCGGCCTCCTGCGCCCTCTTCGCCGCCA
TGTGCCTCGAGACCTACGGCCTGCGCGTGCGGGAGGTGAACGCGACGCAG
TTCGACGAGAAGATGAACCTGCGGGGCCGCCGCTGGAGGGCCGAGCGCAA
CTTCTACATCTCCTTCATGTTCCTCTCGTGCTCCGTGCTGGCGAACCGGG
TGCGGCTCATGCTTAAGGAGGTGGACTCGCTCACCGAGCAGATTCGAGAG
ATGCGCAAGAGATGACCATCGGTGGAGAAATGACCGGCCGGGGACGGCGT
TGCTAGAAGTTTTGGTCATGTGTTTTTGTTTTCACTACAGGGCGGTGTGT
CTTACTAGTGGTGCGTTTCGTATTTCGTATTCTATCTGTTGGTGTGTGTT
TTTTTGTGATGTTGTGAGGTGTGTTTATTTGTGGTACTGTTTAACGATGC
AGCACTCGAGGGACACAAAGAGAGAGAGACGATGACGCCAGTCGTGCCCT
TAGCTCCCTCGGCACAAGATGGTACAACTGTCAGTTAACACAAGAAGGCG
AGTAGGGTGTTCCAACAACGGGTGGACGTCGACATGGGGAGGGATGATGC
CGAGAAGGGTCTATTACATAGCGCAAGAGGTGGTCTTGCACACCTATCGA
GTGGTCATGCTTGTACGTACCGGTGACCCCTCTTCGTAACTTGTGGAGTG
AGACCATTGACTCGAACAAGCAAGGAAGTGCTTTCATGAACTTCGATGGA
TGTGATTTCTTTCTTTCGCTGCATACACGACCATCGCCCTCTCGTCTAAA
CGGGAAAGAGATGGCTCGGTCAACACCAACCCGTCTTAATCTAGCTGAAA
GCGAGTGAGTGTATGGGGAAGCCTATCGGCATGGCTACTACTACTGCGGC
GCGCGCTCGACACCTGTTTTCATCGGTTTTCTTTCGAGCTTTACTAGCAC
AAGGGGGATTGATGGCAGCGATGGAGTCAAGATTATGTGCAGTCTTGTTC
CTATCGGAAGGAACGACGTGCTGCTCCTGTCCCTTTGTATCGCTCTCTTT
TTCTTCGTCGCTCTCGAGCATGTGCATGTTCGTCTAGCCAAGGAAAGCGT
GAGGTAATCTTCGGTTGACGCGCGCGGTACGCGTCTTCTTGGCCGCACGA
GGAATGATACGACCCTTTTGCTCG
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Coding sequence (CDS) from alignment at Scaffold_189:442566..447089-

>EsuBft468_14a-0001 ID=EsuBft468_14a-0001|Name=EsuBft468_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=426bp|location=Sequence derived from alignment at Scaffold_189:442566..447089- (Ectocarpus subulatus male Bft15b)
ATGGCGTCAAACAATTTGTGGCCGATGCTCATCAAAATCATATTTCCGAT
ACCAGCGAGCTTCTTGCTTTTGATTTGTTTGCCTCTGTCAACCCAAAGCA
GGATAATGCGATGGACGCGCCGTCTCTACGACAAGATCTTCTCTTTCCAG
GTGATGAGCATCCCCCTCATCTACCTCATCATGGCGGCCTCCTGCGCCCT
CTTCGCCGCCATGTGCCTCGAGACCTACGGCCTGCGCGTGCGGGAGGTGA
ACGCGACGCAGTTCGACGAGAAGATGAACCTGCGGGGCCGCCGCTGGAGG
GCCGAGCGCAACTTCTACATCTCCTTCATGTTCCTCTCGTGCTCCGTGCT
GGCGAACCGGGTGCGGCTCATGCTTAAGGAGGTGGACTCGCTCACCGAGC
AGATTCGAGAGATGCGCAAGAGATGA
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