EsuBft4590_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4590_2a-0001
Unique Name	EsuBft4590_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:170247..173018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FQN9
ProteomeId	EsuBft4590_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	248
Hectar predicted targeting category	other localisation
Evalue	0.0
EggNOG OGs	2E3IK@1\|root,2SAKM@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4590_2a	EsuBft4590_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 170247..173018 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4590_2a-0001-exon	agat-exon-18105	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 170247..170362 +
EsuBft4590_2a-0001-exon	agat-exon-18104	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 170424..172285 +
EsuBft4590_2a-0001-exon	agat-exon-18103	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 172461..172939 +
EsuBft4590_2a-0001-exon	EsuBft4590_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 172995..173018 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4590_2a-0001-cds	EsuBft4590_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 170247..170362 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4590_2a-0001	EsuBft4590_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 170247..173018 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:170247..173018+
coding sequence from alignment at Scaffold_246:170247..173018+

spliced messenger RNA

>EsuBft4590_2a-0001 ID=EsuBft4590_2a-0001|Name=EsuBft4590_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2481bp|location=Sequence derived from alignment at Scaffold_246:170247..173018+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGGGCAACCACGGCAGCTGTATCATCACCACATGCCACCAGCTA
CCGGTGGTGCTACGTGGAGCAGGTAGACCAGGTCGCTCCCGTCGTAGGCA
GGAGCAACGGGTGGCGGGTTCGTATCTCCTTCCCTTCGTCGCCGGGGCCG
GGATACAGGTGGTTCAACTCGCACCCCCTCGGAGGAGATCCCAACCTGTA
CAATTTTCAAACTTGGGCGAGGACGGTGCTGCAGGGAGGCATGGTCCACC
CGCGTGACGCCGAGGCTTGGCGCACGGCGTTTGTGGAGGTAGAGGGTGGT
GGCCTTGGACAGCTGGTTGTGTCAGCGGCCGACGAGAGCTGGCGAGTAAT
CCTCTGCTGGGCGTCAGCTGGCAGGAGGATCGAAGTCGACACCGGCATCC
CGATCTCTCTTGTGAGCCTCCAGGTCCGATCTGGTATCGACTCACAGAGC
CCCTTTTTCAGACAGCTTAACATAGCGACCTTCGGGCACAGAGTTGTGAG
ATATGCCCCCATCACCGCATTCGGCAAAAAATGGCAGAAACAGCTTCCCG
GAGCCTGTCTCGCTGTCCTCGTCGCCGACGTTTGGCGCGATAGTCAAGTC
TACCTGCTTAAAAAAACGAAGGAGAGGAGAAGGTTTGGATTCCGCGATGT
AGATCCCACGGGTGCGTTCATGATCTCATCTCGTGGTGGTCGACCAAAAA
AGGGCGCGCCTGTACACAACAAGAACGCTCTTGACGGTGGGAACTACTTC
CGCAACCTGTATTCGATTCTACTGGAGCGAGACATCGGGGAAGTAGAGTT
CGACACATGGGTTTCGGGGGATGCAGAACCACCCGCCCTGACATTACTGC
ATCTCGAAAAGTGGCTCCATATGACCAACGCCAGCGTGGTGGTGTGGTCA
CATCGGGGCACTGGTGCCAACATTCTTGGACCATCCGACGGGAAAACGAA
CCTCCAACCGCCCACACTACACGTTGGGGTTCGTGAGGGACACGTGTACC
GGCTTGTGCTCGAGGGGCCTTGGGGAGACAGGTTTGGATCGTCTCTAGAC
GTGGCAATCGATCACAGCGTACGAACTTACCGTAAATTCCGTCGAATTTC
TGAGATGACCGTGGAAGAACAGGAACCAGATACGACTGGGTTTGGCACCA
AGACCTTCTCGTGTGTCGCTGACATTGTGAGTGATATCATGGCCATCAAC
CAAACAGGGGGGGACCACAACCGACAGCCAGTAGAAAAGCGGAAGCATGG
GAGGAAGGTAGCAGAAAGCAAGACGTGGTACGCGCCTCCAGGAACGGCCC
TCGACGAACTCATGCTCCACCTACACCTCGCTGGGGTCTCTTGCAAGGGT
AAACTCACGAACTACAGTCGCTGGGATTCACTGTCCTTACCAGCGCACGG
TGTAGTCATCCGAACCTGGTGCAGCGCGAGCATGGGTGGGCTCGATCCCG
ATGACTTCGAGCCCGACCAGGCAACACGATTGATCGAGCTGCATAATGCC
CTGGGTCTGAAGTTCCACCGCGGGGTATTGGATTTTCGAGTATCGAGCCA
GTACAGCCAGTCTCTGCTCGCCCTCCTTGAGGTGTGCTGGCGGGGGCCGA
TCGTCGGGGCAGAGGACGCGTCCGGGAGTTCCTACGGAAGGGAAGACTGG
CAATGTGACATAAACGGGGCCCACACGGCCGCCCTAATGAACATGGAGAC
GGTGCCCGTTTTCGGCCACATGGATGAGGTGGAGGAGTTCGATGGCCACA
ACATCGAGGATTGGACGCTATACACCATCAAGCTGGACGCGCTCGGTGAG
CCAGACGTATTCCTTGATGCGGATGTGATGCCGGTCTTCGGTCGAAACTA
CAAGCGTTACCTCGACCTCATCGACAACGCGCCTCGCCATAGAGTCACCC
ACTTCGTGCGACCATCCAGAACGGTCAGCAGGTGCCACATACCCAAACTT
GTAAGAGACCTGCTCGCGCATGAGCTGGAACGAACCTGGTACAGAGATGG
CTTCTGGGCGTTAGGTGCGCTCATTCTCGACGAAACTCGATTACGAGTGT
TGGAGGCGAGGAACGCTCTCGAACTATGCGGCGCGTCCGACTTTAGCTTC
CAGTGTGACGCGGTGTTCTTCAGGGGATCTTCTTCGGTGCAAGAAAATAT
GAGACTCCGCTTCAACCAGTTGTTTAGCGGCAACGACAAAACCCCCGGCA
CTCTCAAGTTTGAACCGGCATTGAAGAACCCGCTGTGTGGAGAGAGGAGG
GTGTTCGAAGGCATCGTGGTCAAGCTATCGCTGGATGCGTTACCTCCGGC
AATGAGGAAAATTCCTTGCTCGTTAAAACCCCGGCTTTTAGTGATCCCTC
TGTGGGATGGCATCGGCACCGGCTTCAGTTCGATGGAAGAAGCTCACAAC
GCCTGGCGTCGTCTCGGCAAGAACACCAAGCGCAATATGTGGCCGGAAAT
ATGCGAGGTTCAAGGATTGTTTGTGCGGTGA

protein sequence of EsuBft4590_2a-0001

>EsuBft4590_2 ID=EsuBft4590_2|Name=EsuBft4590_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=826bp
MARATTAAVSSPHATSYRWCYVEQVDQVAPVVGRSNGWRVRISFPSSPGP
GYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEGG
GLGQLVVSAADESWRVILCWASAGRRIEVDTGIPISLVSLQVRSGIDSQS
PFFRQLNIATFGHRVVRYAPITAFGKKWQKQLPGACLAVLVADVWRDSQV
YLLKKTKERRRFGFRDVDPTGAFMISSRGGRPKKGAPVHNKNALDGGNYF
RNLYSILLERDIGEVEFDTWVSGDAEPPALTLLHLEKWLHMTNASVVVWS
HRGTGANILGPSDGKTNLQPPTLHVGVREGHVYRLVLEGPWGDRFGSSLD
VAIDHSVRTYRKFRRISEMTVEEQEPDTTGFGTKTFSCVADIVSDIMAIN
QTGGDHNRQPVEKRKHGRKVAESKTWYAPPGTALDELMLHLHLAGVSCKG
KLTNYSRWDSLSLPAHGVVIRTWCSASMGGLDPDDFEPDQATRLIELHNA
LGLKFHRGVLDFRVSSQYSQSLLALLEVCWRGPIVGAEDASGSSYGREDW
QCDINGAHTAALMNMETVPVFGHMDEVEEFDGHNIEDWTLYTIKLDALGE
PDVFLDADVMPVFGRNYKRYLDLIDNAPRHRVTHFVRPSRTVSRCHIPKL
VRDLLAHELERTWYRDGFWALGALILDETRLRVLEARNALELCGASDFSF
QCDAVFFRGSSSVQENMRLRFNQLFSGNDKTPGTLKFEPALKNPLCGERR
VFEGIVVKLSLDALPPAMRKIPCSLKPRLLVIPLWDGIGTGFSSMEEAHN
AWRRLGKNTKRNMWPEICEVQGLFVR

mRNA from alignment at Scaffold_246:170247..173018+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4590_2a-0001 ID=EsuBft4590_2a-0001|Name=EsuBft4590_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2772bp|location=Sequence derived from alignment at Scaffold_246:170247..173018+ (Ectocarpus subulatus male Bft15b)
ATGGCACGGGCAACCACGGCAGCTGTATCATCACCACATGCCACCAGCTA
CCGGTGGTGCTACGTGGAGCAGGTAGACCAGGTCGCTCCCGTCGTAGGCA
GGAGCAACGGGTGGCGGTACATGGGGCCTTTTAGGGATCACCTATAGGCG
CCAGGCCGTCTTCGGCACGGGGTTTAGGGTTCGTATCTCCTTCCCTTCGT
CGCCGGGGCCGGGATACAGGTGGTTCAACTCGCACCCCCTCGGAGGAGAT
CCCAACCTGTACAATTTTCAAACTTGGGCGAGGACGGTGCTGCAGGGAGG
CATGGTCCACCCGCGTGACGCCGAGGCTTGGCGCACGGCGTTTGTGGAGG
TAGAGGGTGGTGGCCTTGGACAGCTGGTTGTGTCAGCGGCCGACGAGAGC
TGGCGAGTAATCCTCTGCTGGGCGTCAGCTGGCAGGAGGATCGAAGTCGA
CACCGGCATCCCGATCTCTCTTGTGAGCCTCCAGGTCCGATCTGGTATCG
ACTCACAGAGCCCCTTTTTCAGACAGCTTAACATAGCGACCTTCGGGCAC
AGAGTTGTGAGATATGCCCCCATCACCGCATTCGGCAAAAAATGGCAGAA
ACAGCTTCCCGGAGCCTGTCTCGCTGTCCTCGTCGCCGACGTTTGGCGCG
ATAGTCAAGTCTACCTGCTTAAAAAAACGAAGGAGAGGAGAAGGTTTGGA
TTCCGCGATGTAGATCCCACGGGTGCGTTCATGATCTCATCTCGTGGTGG
TCGACCAAAAAAGGGCGCGCCTGTACACAACAAGAACGCTCTTGACGGTG
GGAACTACTTCCGCAACCTGTATTCGATTCTACTGGAGCGAGACATCGGG
GAAGTAGAGTTCGACACATGGGTTTCGGGGGATGCAGAACCACCCGCCCT
GACATTACTGCATCTCGAAAAGTGGCTCCATATGACCAACGCCAGCGTGG
TGGTGTGGTCACATCGGGGCACTGGTGCCAACATTCTTGGACCATCCGAC
GGGAAAACGAACCTCCAACCGCCCACACTACACGTTGGGGTTCGTGAGGG
ACACGTGTACCGGCTTGTGCTCGAGGGGCCTTGGGGAGACAGGTTTGGAT
CGTCTCTAGACGTGGCAATCGATCACAGCGTACGAACTTACCGTAAATTC
CGTCGAATTTCTGAGATGACCGTGGAAGAACAGGAACCAGATACGACTGG
GTTTGGCACCAAGACCTTCTCGTGTGTCGCTGACATTGTGAGTGATATCA
TGGCCATCAACCAAACAGGGGGGGACCACAACCGACAGCCAGTAGAAAAG
CGGAAGCATGGGAGGAAGGTAGCAGAAAGCAAGACGTGGTACGCGCCTCC
AGGAACGGCCCTCGACGAACTCATGCTCCACCTACACCTCGCTGGGGTCT
CTTGCAAGGGTAAACTCACGAACTACAGTCGCTGGGATTCACTGTCCTTA
CCAGCGCACGGTGTAGTCATCCGAACCTGGTGCAGCGCGAGCATGGGTGG
GCTCGATCCCGATGACTTCGAGCCCGACCAGGCAACACGATTGATCGAGC
TGCATAATGCCCTGGGTCTGAAGTTCCACCGCGGGGTATTGGATTTTCGA
GTATCGAGCCAGTACAGCCAGTCTCTGCTCGCCCTCCTTGAGGTGTGCTG
GCGGGGGCCGATCGTCGGGGCAGAGGACGCGTCCGGGAGTTCCTACGGAA
GGGAAGACTGGCAATGTGACATAAACGGGGCCCACACGGCCGCCCTAATG
AACATGGAGACGGTGCCCGTTTTCGGCCACATGGATGAGGTGGAGGAGTT
CGATGGCCACAACATCGAGGATTGGACGCTATACACCATCAAGCTGGACG
CGCTCGGTGAGCCAGACGTATTCCTTGATGCGGATGTGATGCCGGTCTTC
GGTCGAAACTACAAGCGTTACCTCGACCTCATCGACAACGCGCCTCGCCA
TAGAGTCACCCACTTCGTGCGACCATCCAGAACGGTCAGCAGGTGCCACA
TACCCAAACTTGTAAGAGACCTGCTCGCGCATGAGCTGGGTGATCCTCTC
CTCGAGGATGCCGACTGTGCACGCCGATTTAAAAAAGGAATATTCGTGCG
GGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
TTGTTTCGACGCAGAACGAACCTGGTACAGAGATGGCTTCTGGGCGTTAG
GTGCGCTCATTCTCGACGAAACTCGATTACGAGTGTTGGAGGCGAGGAAC
GCTCTCGAACTATGCGGCGCGTCCGACTTTAGCTTCCAGTGTGACGCGGT
GTTCTTCAGGGGATCTTCTTCGGTGCAAGAAAATATGAGACTCCGCTTCA
ACCAGTTGTTTAGCGGCAACGACAAAACCCCCGGCACTCTCAAGTTTGAA
CCGGCATTGAAGAACCCGCTGTGTGGAGAGAGGAGGGTGTTCGAAGGCAT
CGTGGTCAAGCTATCGCTGGATGCGTTACCTCCGGCAATGAGGAAAATTC
CTTGCTCGTTAAAACCCCGGCTTTTAGTGATCCCTCTGTGGGATGGCATC
GGCACCGGCTTCAGTTCGATGGAAGAAGCTCACAACGCCTGGCGTCGTCT
CGGCAAGAACACCAAGCGCAATATGTGGCCGGAAATATGCGAGGTCGAGT
CACCATCGAAACTAGAAATTTTAATCCGCGGCTTGTTGTCTCGACAAGGT
TCAAGGATTGTTTGTGCGGTGA

Coding sequence (CDS) from alignment at Scaffold_246:170247..173018+

>EsuBft4590_2a-0001 ID=EsuBft4590_2a-0001|Name=EsuBft4590_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2481bp|location=Sequence derived from alignment at Scaffold_246:170247..173018+ (Ectocarpus subulatus male Bft15b)
ATGGCACGGGCAACCACGGCAGCTGTATCATCACCACATGCCACCAGCTA
CCGGTGGTGCTACGTGGAGCAGGTAGACCAGGTCGCTCCCGTCGTAGGCA
GGAGCAACGGGTGGCGGGTTCGTATCTCCTTCCCTTCGTCGCCGGGGCCG
GGATACAGGTGGTTCAACTCGCACCCCCTCGGAGGAGATCCCAACCTGTA
CAATTTTCAAACTTGGGCGAGGACGGTGCTGCAGGGAGGCATGGTCCACC
CGCGTGACGCCGAGGCTTGGCGCACGGCGTTTGTGGAGGTAGAGGGTGGT
GGCCTTGGACAGCTGGTTGTGTCAGCGGCCGACGAGAGCTGGCGAGTAAT
CCTCTGCTGGGCGTCAGCTGGCAGGAGGATCGAAGTCGACACCGGCATCC
CGATCTCTCTTGTGAGCCTCCAGGTCCGATCTGGTATCGACTCACAGAGC
CCCTTTTTCAGACAGCTTAACATAGCGACCTTCGGGCACAGAGTTGTGAG
ATATGCCCCCATCACCGCATTCGGCAAAAAATGGCAGAAACAGCTTCCCG
GAGCCTGTCTCGCTGTCCTCGTCGCCGACGTTTGGCGCGATAGTCAAGTC
TACCTGCTTAAAAAAACGAAGGAGAGGAGAAGGTTTGGATTCCGCGATGT
AGATCCCACGGGTGCGTTCATGATCTCATCTCGTGGTGGTCGACCAAAAA
AGGGCGCGCCTGTACACAACAAGAACGCTCTTGACGGTGGGAACTACTTC
CGCAACCTGTATTCGATTCTACTGGAGCGAGACATCGGGGAAGTAGAGTT
CGACACATGGGTTTCGGGGGATGCAGAACCACCCGCCCTGACATTACTGC
ATCTCGAAAAGTGGCTCCATATGACCAACGCCAGCGTGGTGGTGTGGTCA
CATCGGGGCACTGGTGCCAACATTCTTGGACCATCCGACGGGAAAACGAA
CCTCCAACCGCCCACACTACACGTTGGGGTTCGTGAGGGACACGTGTACC
GGCTTGTGCTCGAGGGGCCTTGGGGAGACAGGTTTGGATCGTCTCTAGAC
GTGGCAATCGATCACAGCGTACGAACTTACCGTAAATTCCGTCGAATTTC
TGAGATGACCGTGGAAGAACAGGAACCAGATACGACTGGGTTTGGCACCA
AGACCTTCTCGTGTGTCGCTGACATTGTGAGTGATATCATGGCCATCAAC
CAAACAGGGGGGGACCACAACCGACAGCCAGTAGAAAAGCGGAAGCATGG
GAGGAAGGTAGCAGAAAGCAAGACGTGGTACGCGCCTCCAGGAACGGCCC
TCGACGAACTCATGCTCCACCTACACCTCGCTGGGGTCTCTTGCAAGGGT
AAACTCACGAACTACAGTCGCTGGGATTCACTGTCCTTACCAGCGCACGG
TGTAGTCATCCGAACCTGGTGCAGCGCGAGCATGGGTGGGCTCGATCCCG
ATGACTTCGAGCCCGACCAGGCAACACGATTGATCGAGCTGCATAATGCC
CTGGGTCTGAAGTTCCACCGCGGGGTATTGGATTTTCGAGTATCGAGCCA
GTACAGCCAGTCTCTGCTCGCCCTCCTTGAGGTGTGCTGGCGGGGGCCGA
TCGTCGGGGCAGAGGACGCGTCCGGGAGTTCCTACGGAAGGGAAGACTGG
CAATGTGACATAAACGGGGCCCACACGGCCGCCCTAATGAACATGGAGAC
GGTGCCCGTTTTCGGCCACATGGATGAGGTGGAGGAGTTCGATGGCCACA
ACATCGAGGATTGGACGCTATACACCATCAAGCTGGACGCGCTCGGTGAG
CCAGACGTATTCCTTGATGCGGATGTGATGCCGGTCTTCGGTCGAAACTA
CAAGCGTTACCTCGACCTCATCGACAACGCGCCTCGCCATAGAGTCACCC
ACTTCGTGCGACCATCCAGAACGGTCAGCAGGTGCCACATACCCAAACTT
GTAAGAGACCTGCTCGCGCATGAGCTGGAACGAACCTGGTACAGAGATGG
CTTCTGGGCGTTAGGTGCGCTCATTCTCGACGAAACTCGATTACGAGTGT
TGGAGGCGAGGAACGCTCTCGAACTATGCGGCGCGTCCGACTTTAGCTTC
CAGTGTGACGCGGTGTTCTTCAGGGGATCTTCTTCGGTGCAAGAAAATAT
GAGACTCCGCTTCAACCAGTTGTTTAGCGGCAACGACAAAACCCCCGGCA
CTCTCAAGTTTGAACCGGCATTGAAGAACCCGCTGTGTGGAGAGAGGAGG
GTGTTCGAAGGCATCGTGGTCAAGCTATCGCTGGATGCGTTACCTCCGGC
AATGAGGAAAATTCCTTGCTCGTTAAAACCCCGGCTTTTAGTGATCCCTC
TGTGGGATGGCATCGGCACCGGCTTCAGTTCGATGGAAGAAGCTCACAAC
GCCTGGCGTCGTCTCGGCAAGAACACCAAGCGCAATATGTGGCCGGAAAT
ATGCGAGGTTCAAGGATTGTTTGTGCGGTGA