EsuBft457_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft457_12a-0001
Unique Name	EsuBft457_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D7G008
ProteomeId	EsuBft457_12
Protein domains	PTHR23115
Protein domains	IPR004160
Protein domains	G3DSA
Protein domains	IPR009001
Owner	apollo_admin@sb-roscoff.fr
Note	eukaryotic peptide chain release factor gtp-binding subunit erf3b os:mus musculus gn:gspt2 pe:1 [Automatic annotation]
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	2354
Hectar predicted targeting category	other localisation
Evalue	9.82e-44
EggNOG OGs	COG5256@1\|root,KOG0459@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	SUP35
KEGG ko	ko:K03267
KEGG Pathway	ko03015,map03015
GOs	GO:0000166,GO:0000287,GO:0000288,GO:0000956,GO:0001882,GO:0001883,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0003824,GO:0003924,GO:0005085,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006464,GO:0006479,GO:0006518,GO:0006725,GO:0006807,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008213,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018444,GO:0019001,GO:0019003,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0022411,GO:0032259,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048519,GO:0050789,GO:0051020,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Description	cytoplasmic translational termination
COG category	J
BRITE	ko00000,ko00001,ko03012,ko03019

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:507915..511008-
coding sequence from alignment at Scaffold_373:507915..511008-

spliced messenger RNA

>EsuBft457_12a-0001 ID=EsuBft457_12a-0001|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2354bp|location=Sequence derived from alignment at Scaffold_373:507915..511008- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCACTGCCACACGTGCGAGGAAGAGTGCACGGTGGTTGAGATCCT
GAGCGTGGTCGACCGCAAGACCGGGGCTAAGAAGAGGCAGCGCTTCGCTA
AGGAGGGAGCCATGGTTACGGCGAAGTTCAAGGGAGCCATGGTTACTGCC
AACTTCAAGGGAGCCATGTTCACGGCCAAGGGTAAGGTGAGGATCCTGGA
CCTCCTTTTCTATGGCAACCGGGTGGATCGCTCGATGTGCATGGAGTCCT
TCGAGGAGATGCCGCACTTGGGACGATTCACTCTGAGAACGGAGGGGAAG
ACAATCGCGATCGGGAAGATTCTCGCCGTGCAGAAGCCCGTCTCCAAGTG
ATGCGGTGGCAGCAGCAGCAGGCATGGCGTAGCACGGTGAGCTTGCTGGC
GAAAGTAAGGCTGCTGTATACAGGTTTACTAGTTGATATGATCGTTGAAG
TTCGCCGGTCTGTTCGAGTCAACAAGCCGTCAGCTGTGTGAGCTGTTGAG
CTTGGGAAACGTCGCACCACCGTTGGCAGCCAGCTGTGGGTTGGTCCCGC
CGGCCTGGTTTATTTCATCTTGCTTCACATCTCTTGATAACGCTGCTGTG
CTCTCACGAACCCACTCCAGAGGGATTCCTTGTTTCATGGGTGTTCTTGG
TTCTGCCTGAGTGAGTGAGAATCATGTGCCCGTCTGTCTGTCGTGCGTAT
GTGGCACTCTCTATCTCCGTCCAAGCATCCCGCTAGTGGGGTGGTGGCCC
TGCGATGTAGCAGGAGGTGGCAGAGGCGATTGTTTCCTGTCGGACACGCA
GCCAATGAAATGAACTTGAACGAAGTCTCCCGTGCCTCCTAGCGAGTGGT
CTGGCGAAGAGTTGTTCTGATGCCCATGAGACCAACGAGCGAATGACTGA
TGGTCAAGGCCTCGAAAGTGGCTGCTGACAGTCCGACCCACGTTTTTTCC
GTTTGCGTAAAGTGCCATGGTTCGACAAGCAATCTGAAGGATCGATCCGT
TGAGATTGGCGGACACCCATCTCGTGCGTCTGATTGGTCTCTTCGGCCAA
GGGTTGTCTTGCCCAATGAAATGTGTAATTGGCGTCGTCGCCTGACGCNG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGCAGTTGCGTGTATTTTGGGGCGAAGGAAGGTGCTCCGTTAA
CCGTCGCCATGCCCTTTGATGGCGGGGGGTAGCTACGTTGGCTGTTAGCT
GGGTGCTTATCTGTGTCTTATACTTCGGTGCGGAATGCGTCTGGCTTTGA
AAGAGGCGTTGGTGATGTAGGGGGACGTGTCCTGCTAGTATGCGGTAGAG
GACGCACCCGCCTTCTGCTCAGAAGAAACACGGTATTTTAGGGTGAGGCT
GGGCCTGTGGTTTGTGCCTGATGGGGATATGGAGTAAGTTTATGCGTTCG
TTGACGCGAGATTACCCGGCCGCATTAAGTTGCGGTGCCTCACGTCACAA
CGCATTGACACAGCTGCAGCTACTTCAGTTCTATATTTATCTCCCCCCCT
AAATACTCCGTGGGATAGTTCATTTTTGCATGAAGTGATTGCTACTTGTA
ACGTTTTTTTGTAATTTGTTGTTCCTCGTTGAATCTCATTTCGGAAAACG
CCGTTGTTTCTCCGGACTGGTGAAAGGGCAGGCCACCTTTGACTGAGTTG
GCGAGGGTTAAAGTTCGAAAAAGAATGGTAAAATGTACGTGTATGAACGA
AAGACCCTGACTCTGTCACCTGGTCAGCGTGCCCTTGTGAGCTAGGTAAC
CTCTCGGTGCGTGTTGGGCAGACTGGGGGTTGTCTTGAAGCAGCGTGTTT
TTGCCCGGCACAGCCCCGTAATTCCGCAGCAAAAAATGTCCTTGCAGTGA
ATGCCGGTGTACCACGGCTGTGGGAGCCCCGGAGGACAGGGAAGGGTGGT
TCGGAGAGACGTTTCCCGAATATTGCTCAATGTCTAGTTGCTCAACATGC
TACTCTGTAACATTCATTCAGTATTTTGTTGCAAAGCAGGGGCTCGCTCT
CTCCATAATGCTGCAAGTTGTGCTAACCAACAACTCAGTGTTTTTTGCTG
TCGTGGGCACCTCCTCGGCACCAATCAATGCAGACTTTGAAAAACAACAT
TGATTGTCAAGTATTCTTTGTTGTCGGGTCGTCCCCCGCCTGTTTTTTTT
TCGGTTGCGCGGGCGGTGTTTAACCCAATCGTTGTTTTTGCAATCTTCAT
AGCAGTAAGTTTTCGGTTACGTCCGCACCGGTCCGACTGAGCGCGGTCCC
TTTCCTTCCGTGCTCTTTGGCTAGAGTCTACACAGTCATTTTTGTGACCA
CGCA

protein sequence of EsuBft457_12a-0001

>EsuBft457_12 ID=EsuBft457_12|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=116bp
MCHCHTCEEECTVVEILSVVDRKTGAKKRQRFAKEGAMVTAKFKGAMVTA
NFKGAMFTAKGKVRILDLLFYGNRVDRSMCMESFEEMPHLGRFTLRTEGK
TIAIGKILAVQKPVSK

mRNA from alignment at Scaffold_373:507915..511008-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft457_12a-0001 ID=EsuBft457_12a-0001|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3094bp|location=Sequence derived from alignment at Scaffold_373:507915..511008- (Ectocarpus subulatus male Bft15b)
ATGTGCCACTGCCACACGTGCGAGGAAGAGTGCACGGTGGTTGAGATCCT
GAGCGTGGTCGACCGCAAGACCGGGGCTAAGAAGAGGCAGCGCTTCGCTA
AGGAGGGAGCCATGGTTACGGCGAAGTTCAAGGTAGGTGCTACGGTAATA
ACAACATTTCACGCTAGGGTTAGGGTCAGGGAGCCATGGTTACTGCCAAC
TTCAAGGTGAAGCAAGTGCTGCAAAGTCTAAGGTCTCCTTGTTTGAGGTG
AAGAAGGAGCTTCAAGGTGAGACAAGTGCTATTAAGTCTAAGGTCTCCTT
ATTTGAGGCGCTAAAGGAACGTTTTACCGTAGGGTTACGGTTAGGGAGCC
ATGTTCACGGCCAAGGGTAAGGTGAGGTAAGTGCTACAATAGCAACATTT
CAACTCTCACCTATTAACCTCTCACCTATGCATACTCTTGTTAGTAAGAG
TCCCTTATTTTGCCCGAGACCCGCTGCTTTTTCCCTCTTGGTGAAAACCC
ACCATGGAATATTATTGTACAAGCAAGGTTTTATGTGCAAGGGTGGGCTT
CGAGTACTTGTGCTTGGAAAGGTAAGGATCCTGGACCTCCTTTTCTATGG
CAACCGGGTTCGTCGTGTCGCTCTGTTACATATTGCTATTGGGAGTGGAG
ACACCGCGATTGTGGCGGGTGCACTCTCGCTTATTTCTTGATCAGTCCGT
TTCAATGCTGAAAGCTTGAGACACCACAGCAGCAGCAGCAGCAGCAGCGT
TGTTGCTGCGTCTCAGCTGTTGAGATGCCGAACAAGAACGCCTGCTACGT
GCGTCACGTCAGGTGGATCGCTCGATGTGCATGGAGTCCTTCGAGGAGAT
GCCGCACTTGGGACGATTCACTCTGAGAACGGAGGGGAAGACAATCGCGA
TCGGGAAGATTCTCGCCGTGCAGAAGCCCGTCTCCAAGTGATGCGGTGGC
AGCAGCAGCAGGCATGGCGTAGCACGGTGAGCTTGCTGGCGAAAGTAAGG
CTGCTGTATACAGGTTTACTAGTTGATATGATCGTTGAAGTTCGCCGGTC
TGTTCGAGTCAACAAGCCGTCAGCTGTGTGAGCTGTTGAGCTTGGGAAAC
GTCGCACCACCGTTGGCAGCCAGCTGTGGGTTGGTCCCGCCGGCCTGGTT
TATTTCATCTTGCTTCACATCTCTTGATAACGCTGCTGTGCTCTCACGAA
CCCACTCCAGAGGGATTCCTTGTTTCATGGGTGTTCTTGGTTCTGCCTGA
GTGAGTGAGAATCATGTGCCCGTCTGTCTGTCGTGCGTATGTGGCACTCT
CTATCTCCGTCCAAGCATCCCGCTAGTGGTAAGTTCTTCCTGTCTGAGTG
AGTGAGAATTCATGCGCCCTTGCTGTCTTCCGTGCGTACATGACCACGAG
CATGCCCATCCTCACTCTGTCCATGCATGCCCCTCGTTGTTTTCCCGCCG
TCTGCCTTCCTCCCTGCGCCTCGGGTAGGGGTGGTGGCCCTGCGATGTAG
CAGGAGGTGGCAGAGGCGATTGTTTCCTGTCGGACACGCAGCCAATGAAA
TGAACTTGAACGAAGTCTCCCGTGCCTCCTAGCGAGTGGTCTGGCGAAGA
GTTGTTCTGATGCCCATGAGACCAACGAGCGAATGACTGATGGTCAAGGC
CTCGAAAGTGGCTGCTGACAGTCCGACCCACGTTTTTTCCGTTTGCGTAA
AGTGCCATGGTTCGACAAGCAATCTGAAGGATCGATCCGTTGAGATTGGC
GGACACCCATCTCGTGCGTCTGATTGGTCTCTTCGGCCAAGGGTTGTCTT
GCCCAATGAAATGTGTAATTGGCGTCGTCGCCTGACGCNGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
AGTTGCGTGTATTTTGGGGCGAAGGAAGGTGCTCCGTTAACCGTCGCCAT
GCCCTTTGATGGCGGGGGGTAGCTACGTTGGCTGTTAGCTGGGTGCTTAT
CTGTGTCTTATACTTCGGTGCGGAATGCGTCTGGCTTTGAAAGAGGCGTT
GGTGATGTAGGGGGACGTGTCCTGCTAGTATGCGGTAGAGGACGCACCCG
CCTTCTGCTCAGAAGAAACACGGTATTTTAGGGTGAGGCTGGGCCTGTGG
TTTGTGCCTGATGGGGATATGGAGTAAGTTTATGCGTTCGTTGACGCGAG
ATTACCCGGCCGCATTAAGTTGCGGTGCCTCACGTCACAACGCATTGACA
CAGCTGCAGCTACTTCAGTTCTATATTTATCTCCCCCCCTAAATACTCCG
TGGGATAGTTCATTTTTGCATGAAGTGATTGCTACTTGTAACGTTTTTTT
GTAATTTGTTGTTCCTCGTTGAATCTCATTTCGGAAAACGCCGTTGTTTC
TCCGGACTGGTGAAAGGGCAGGCCACCTTTGACTGAGTTGGCGAGGGTTA
AAGTTCGAAAAAGAATGGTAAAATGTACGTGTATGAACGAAAGACCCTGA
CTCTGTCACCTGGTCAGCGTGCCCTTGTGAGCTAGGTAACCTCTCGGTGC
GTGTTGGGCAGACTGGGGGTTGTCTTGAAGCAGCGTGTTTTTGCCCGGCA
CAGCCCCGTAATTCCGCAGCAAAAAATGTCCTTGCAGTGAATGCCGGTGT
ACCACGGCTGTGGGAGCCCCGGAGGACAGGGAAGGGTGGTTCGGAGAGAC
GTTTCCCGAATATTGCTCAATGTCTAGTTGCTCAACATGCTACTCTGTAA
CATTCATTCAGTATTTTGTTGCAAAGCAGGGGCTCGCTCTCTCCATAATG
CTGCAAGTTGTGCTAACCAACAACTCAGTGTTTTTTGCTGTCGTGGGCAC
CTCCTCGGCACCAATCAATGCAGACTTTGAAAAACAACATTGATTGTCAA
GTATTCTTTGTTGTCGGGTCGTCCCCCGCCTGTTTTTTTTTCGGTTGCGC
GGGCGGTGTTTAACCCAATCGTTGTTTTTGCAATCTTCATAGCAGTAAGT
TTTCGGTTACGTCCGCACCGGTCCGACTGAGCGCGGTCCCTTTCCTTCCG
TGCTCTTTGGCTAGAGTCTACACAGTCATTTTTGTGACCACGCA

Coding sequence (CDS) from alignment at Scaffold_373:507915..511008-

>EsuBft457_12a-0001 ID=EsuBft457_12a-0001|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=351bp|location=Sequence derived from alignment at Scaffold_373:507915..511008- (Ectocarpus subulatus male Bft15b)
ATGTGCCACTGCCACACGTGCGAGGAAGAGTGCACGGTGGTTGAGATCCT
GAGCGTGGTCGACCGCAAGACCGGGGCTAAGAAGAGGCAGCGCTTCGCTA
AGGAGGGAGCCATGGTTACGGCGAAGTTCAAGGGAGCCATGGTTACTGCC
AACTTCAAGGGAGCCATGTTCACGGCCAAGGGTAAGGTGAGGATCCTGGA
CCTCCTTTTCTATGGCAACCGGGTGGATCGCTCGATGTGCATGGAGTCCT
TCGAGGAGATGCCGCACTTGGGACGATTCACTCTGAGAACGGAGGGGAAG
ACAATCGCGATCGGGAAGATTCTCGCCGTGCAGAAGCCCGTCTCCAAGTG
A