EsuBft4558_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4558_3a-0001
Unique NameEsuBft4558_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:398661..399928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHJ2
ProteomeIdEsuBft4558_3
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length67
Hectar predicted targeting categoryother localisation
Evalue1.07e-16
EggNOG OGsCOG5409@1|root,KOG1162@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionphosphate ion transport
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_3aEsuBft4558_3aEctocarpus subulatus male Bft15bgeneScaffold_68 398661..399928 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_3a-0001-exonagat-exon-33579Ectocarpus subulatus male Bft15bexonScaffold_68 398661..399083 -
EsuBft4558_3a-0001-exonEsuBft4558_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 399628..399794 -
EsuBft4558_3a-0001-exonagat-exon-33580Ectocarpus subulatus male Bft15bexonScaffold_68 399841..399928 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_3a-0001-exonagat-three_prime_utr-16245Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 398661..398843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_3a-0001-cdsEsuBft4558_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 398844..399083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_3a-0001EsuBft4558_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 398844..399928 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4558_3a-0001 ID=EsuBft4558_3a-0001|Name=EsuBft4558_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=678bp|location=Sequence derived from alignment at Scaffold_68:398661..399928- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCAAACCAGGAAGACGTTGTCGTGGGCGGGAGTGGCGGCGGCGG
CGACAGCAGCAGCACCGGGGCCACGAGAGTCCGCGCAGGGCGAGGACGGG
AACGGGGGGGCTCCGGCTGGAGTCCGTCCTCCTCGACAACCCCTGCCCCT
TCTCTGCAGCAGGGGAGCGGTGGTGGTGGTGGTGGCGACGTGGACGGCGG
CATGGGCTTCATGGGTAACAGCAGCGGCGACGAAAACTTTTTCCACCGAA
GACACGCGACGTGGGACTGCATCGCGGAGGACGCTTTGGGTCAGCATGTG
TGGCACTACCCGGCCTTCAAGATGTACCTCGGGCTTGGCAACCTCACCCT
GCTCGTGTACATGTGGGGGGTCAACATCTGGGTAAGCGAGAGAGAGATAG
ACCAAGAGAGACACACGCAGAGAAAGAGAGAGGGGGACAGAGACAGAAGG
AGAGACAGCGATAGCCCCTGTGACAGAGGCAGAGAAGGGAAATAGATAAA
CTTGTTGTCACACTCTATTTTTTCGTGCTGGTAAGACTTGAAACAGGGCG
AGGCAATCGTGTTTTTTGCGGTCCTGCTTGCACAATGTGTTCATGCTCTC
CGTGTCGCGTCACGAGCCAATCTTAAGGGCGAAACAGGTCGGGTTAGACA
CCCTTTGCGACGTGAACGAGGTCTGCGT
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protein sequence of EsuBft4558_3a-0001

>EsuBft4558_3 ID=EsuBft4558_3|Name=EsuBft4558_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=164bp
MTANQEDVVVGGSGGGGDSSSTGATRVRAGRGRERGGSGWSPSSSTTPAP
SLQQGSGGGGGGDVDGGMGFMGNSSGDENFFHRRHATWDCIAEDALGQHV
WHYPAFKMYLGLGNLTLLVYMWGVNIWVSEREIDQERHTQRKREGDRDRR
RDSDSPCDRGREGK
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mRNA from alignment at Scaffold_68:398661..399928-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4558_3a-0001 ID=EsuBft4558_3a-0001|Name=EsuBft4558_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1268bp|location=Sequence derived from alignment at Scaffold_68:398661..399928- (Ectocarpus subulatus male Bft15b)
ATGACCGCAAACCAGGAAGACGTTGTCGTGGGCGGGAGTGGCGGCGGCGG
CGACAGCAGCAGCACCGGGGCCACGAGAGTCCGCGCAGGTCAGCCTCGAG
CGCGATGGCGGGCACGACGTCATCTCCGCAGCAGGGCGAGGACGGGAACG
GGGGGGCTCCGGCTGGAGTCCGTCCTCCTCGACAACCCCTGCCCCTTCTC
TGCAGCAGGGGAGCGGTGGTGGTGGTGGTGGCGACGTGGACGGCGGCATG
GGCTTCATGGGTAACAGCAGCGGCGACGAAAACTTTTTCCACCGAAGACA
CGTACGTGCGGCCGTCCCTCAAGAGGGCCATCGTCGAGCTGTAGGACACC
TGCCACCGGCTGCTGTCGTTCGAGGTGGGCGAAGCCAGGGTTGCTTGTTG
CTGCTTGCTCCGGTTGCTGCACAATCGACGGTACTTGTCGAGGCGGTATG
AGACTCCAAACCGTGAGAGACCCGCCTCAATTGCCTGGGCGCTTGTTATT
TCCCCCCCGCATTCGAGAGGGTAGTCCCTGTCCTACAGTACGTCCTCGAG
TGTGTTATATGAGTGCTTTTTCAACGGCTTCCCCTAGCGTGCGCAAATGA
ATGACTTTGTGCTATGAGGAGATCGATGTCCCGCAGGCGAACAGACATCG
ATTTCCAGAGCACGTTTGCTTGGGAAATAGTGCCCACCTCTTGTTTTGCT
GGTGCACTCAACTAGACGTCAACAATAAAGCAAGAACATATTGCATGATA
ATTGAACGAGTTGCATGCTTTTTTTTTTGTTTCATGCATGAGCAAATAGA
CAAACTATACACGGAAACGATGACAACGAACAATTGCAGTTGTAGGCGAC
GTGGGACTGCATCGCGGAGGACGCTTTGGGTCAGCATGTGTGGCACTACC
CGGCCTTCAAGATGTACCTCGGGCTTGGCAACCTCACCCTGCTCGTGTAC
ATGTGGGGGGTCAACATCTGGGTAAGCGAGAGAGAGATAGACCAAGAGAG
ACACACGCAGAGAAAGAGAGAGGGGGACAGAGACAGAAGGAGAGACAGCG
ATAGCCCCTGTGACAGAGGCAGAGAAGGGAAATAGATAAACTTGTTGTCA
CACTCTATTTTTTCGTGCTGGTAAGACTTGAAACAGGGCGAGGCAATCGT
GTTTTTTGCGGTCCTGCTTGCACAATGTGTTCATGCTCTCCGTGTCGCGT
CACGAGCCAATCTTAAGGGCGAAACAGGTCGGGTTAGACACCCTTTGCGA
CGTGAACGAGGTCTGCGT
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Coding sequence (CDS) from alignment at Scaffold_68:398661..399928-

>EsuBft4558_3a-0001 ID=EsuBft4558_3a-0001|Name=EsuBft4558_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=495bp|location=Sequence derived from alignment at Scaffold_68:398661..399928- (Ectocarpus subulatus male Bft15b)
ATGACCGCAAACCAGGAAGACGTTGTCGTGGGCGGGAGTGGCGGCGGCGG
CGACAGCAGCAGCACCGGGGCCACGAGAGTCCGCGCAGGGCGAGGACGGG
AACGGGGGGGCTCCGGCTGGAGTCCGTCCTCCTCGACAACCCCTGCCCCT
TCTCTGCAGCAGGGGAGCGGTGGTGGTGGTGGTGGCGACGTGGACGGCGG
CATGGGCTTCATGGGTAACAGCAGCGGCGACGAAAACTTTTTCCACCGAA
GACACGCGACGTGGGACTGCATCGCGGAGGACGCTTTGGGTCAGCATGTG
TGGCACTACCCGGCCTTCAAGATGTACCTCGGGCTTGGCAACCTCACCCT
GCTCGTGTACATGTGGGGGGTCAACATCTGGGTAAGCGAGAGAGAGATAG
ACCAAGAGAGACACACGCAGAGAAAGAGAGAGGGGGACAGAGACAGAAGG
AGAGACAGCGATAGCCCCTGTGACAGAGGCAGAGAAGGGAAATAG
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