EsuBft4558_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4558_2a-0001
Unique NameEsuBft4558_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:396575..397769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHJ2
ProteomeIdEsuBft4558_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length40
Hectar predicted targeting categorysignal peptide
Evalue2.63e-26
EggNOG OGsCOG5409@1|root,KOG1162@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionphosphate ion transport
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_2aEsuBft4558_2aEctocarpus subulatus male Bft15bgeneScaffold_68 396575..397769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_2a-0001-exonagat-exon-33577Ectocarpus subulatus male Bft15bexonScaffold_68 396575..396872 -
EsuBft4558_2a-0001-exonEsuBft4558_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 397043..397068 -
EsuBft4558_2a-0001-exonagat-exon-33578Ectocarpus subulatus male Bft15bexonScaffold_68 397685..397769 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_2a-0001-exonagat-three_prime_utr-16244Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 396575..396746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_2a-0001-cdsEsuBft4558_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 396747..396872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4558_2a-0001EsuBft4558_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 396747..397769 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4558_2a-0001 ID=EsuBft4558_2a-0001|Name=EsuBft4558_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=409bp|location=Sequence derived from alignment at Scaffold_68:396575..397769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCCTGGTGTCGCTCATCTGCTTCTACAAGTGCCTCAGGGGGGT
CCTGCTCAACCCCACGTGGATGGCGATACTGTACAAGCGTGGTGGGAAGA
AGGCCCGAAAAACGCCTTGGCATGAGCGGAGGGGGCTCCTGCGAGTCCTG
TGGACGACGATAATCTCGCCGTTCGGAAAGGTCCAATTCTTTCAGGGCTA
CGTCGGCGACATCCTTACTAGGCACGGCGGAAGTTAGTGCTGTCTGAAAC
GTCGATAGTATGGGGAAGTCGATTTCACGCTATGTAGTGAAGAAGAATCG
GAGACACTATGTATGTCCACGACCACAACGACGAGTGCTTGCTAAAGGCG
AATTAGATATGAAATACAAGGCGTCCCTGCCGGACGTGGGTGTCAAGCCT
CCCGCGGGT
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protein sequence of EsuBft4558_2a-0001

>EsuBft4558_2 ID=EsuBft4558_2|Name=EsuBft4558_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MAFLVSLICFYKCLRGVLLNPTWMAILYKRGGKKARKTPWHERRGLLRVL
WTTIISPFGKVQFFQGYVGDILTRHGGS
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mRNA from alignment at Scaffold_68:396575..397769-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4558_2a-0001 ID=EsuBft4558_2a-0001|Name=EsuBft4558_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1195bp|location=Sequence derived from alignment at Scaffold_68:396575..397769- (Ectocarpus subulatus male Bft15b)
ATGGCCTTCCTGGTGTCGCTCATCTGCTTCTACAAGTGCCTCAGGGGGGT
CCTGCTCAACCCCACGTGGATGGCGATACTGTACAGTTCGCACGCACCTT
CCCACTGCTGCTGCTGTTTTACACGCTTCTGTGGTTGCTGGTGAGAGCGA
GNNNNNNNNNNNNNNNNNNNNNNNTGGTGTTTGCCATCGGGGTTGGGTTT
TCGTCGCTTGGCAACGACGTTGTAAAGCAAGTCGTTTCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCGTCCCGGCTTTGTAGGGAT
GCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACACCC
TCCTGTTTCTCCCTTCACTATGGCGACACGCGTTCAAGAGCCTGCCAAGA
ATGCATTTATTATATTGCGATACGCGTGTGCGTTGAAGATGACACTTGAC
TTCCATAGCGCATGTGGGTTGTATGTGTCCCACGAAAAGGTGTGTCAAGG
AATTTCTCGACTTCTTGAGGCGCCTCTCTGCCCCGCACAAGTCTTGTGCA
GAGCGTGGTGGGAAGAAGGCCCGAAAAGTTTGCGGCATCCCTGCAAGTGG
CAGAAACAATGCTGGGGGCCAATCCTGAAAGTCTTGCGTGGCGGCTGGTA
GAGTCGGTTGGAAAGGAATAGTTTGTTGACACACCTCCCTCCCTCTCCAA
CCAATTAACGCCTGTTTGGTCGCAATTGAACACTTGCCTCTCGTCAGACG
CCTTGGCATGAGCGGAGGGGGCTCCTGCGAGTCCTGTGGACGACGATAAT
CTCGCCGTTCGGAAAGGTCCAATTCTTTCAGGGCTACGTCGGCGACATCC
TTACTAGGCACGGCGGAAGTTAGTGCTGTCTGAAACGTCGATAGTATGGG
GAAGTCGATTTCACGCTATGTAGTGAAGAAGAATCGGAGACACTATGTAT
GTCCACGACCACAACGACGAGTGCTTGCTAAAGGCGAATTAGATATGAAA
TACAAGGCGTCCCTGCCGGACGTGGGTGTCAAGCCTCCCGCGGGT
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Coding sequence (CDS) from alignment at Scaffold_68:396575..397769-

>EsuBft4558_2a-0001 ID=EsuBft4558_2a-0001|Name=EsuBft4558_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_68:396575..397769- (Ectocarpus subulatus male Bft15b)
ATGGCCTTCCTGGTGTCGCTCATCTGCTTCTACAAGTGCCTCAGGGGGGT
CCTGCTCAACCCCACGTGGATGGCGATACTGTACAAGCGTGGTGGGAAGA
AGGCCCGAAAAACGCCTTGGCATGAGCGGAGGGGGCTCCTGCGAGTCCTG
TGGACGACGATAATCTCGCCGTTCGGAAAGGTCCAATTCTTTCAGGGCTA
CGTCGGCGACATCCTTACTAGGCACGGCGGAAGTTAG
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