Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft446_4 |
| Protein domains | IPR011051 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 171 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft446_4a-0001 ID=EsuBft446_4a-0001|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1711bp|location=Sequence derived from alignment at Scaffold_373:250368..253912+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCCTCTGCAGGTCTCACAGCGTAGTACTTTACGATCTCACACACTCGTGT
ATAAGCTGATAGACAGGGTTGCTGGTAGAAAGTCGCTCTGAAGCCTTTTC
ACACGGGTGGGGGGAGAGAATCAGTCTCTGAGCACAATGCCTAAGATCGC
CGGCTTCGACGGGAAGGAGGTAGAGTACGTCGAGGTCCACGATGAGCCAT
TCCACCGACGGCAGTTCAGCAACGACTATGTCTACATTTACATCGCGGGC
TTCAGGCGAGTGCCCGGCGAAACCTCGCTTTGGCATCGCCATTCCGAGAA
CACCCTGTACGTGTGCGTGGGACATGGAGCGGCGGCCCTCAACCGGCCAA
CGGACAAGGAGCCTTTCGTACACCACGCTTCGCCGGGGGACCTCTGGTGG
GCCATGAGCAAGAGCGCCCCCTACGTGCACCAGGTCTGCCTCCTTCCGGA
GAACACTCACAACTCGCACTTCTTCGCCATGGAAATCCTCAGACCGCCAC
CCACTTGCTCGAGACGCGCCCTCGACCACCGCTGCTACAGCCTCCGGGAG
GAAGACAGCCGCCCGGGGCTCGCTCGCGTCTACGACTTCAGGCTTGAGCC
CGGCGAATCTACGGGGCCTCACACGCTGGGATTCAGCGGGGTGGTGCTCT
GCCTTTCCGATGGCGGGGGGAGCCTGGAGGCCGATGGCGGCGTCTTTGCG
GGCGGAGAGCTGTCGAAGGTCGGGGGGTGGAAGTGGATCGACGGCCCTGT
CAGCGCCAACGCGCGAAATGCGGGCGGCAGTGTCTACCAGGCTTTTGTGG
TGGAGTGGCTGGGGGAAGGCCACTCGGTGGAAGGCTTGTCCAGGCTTTGA
TTGGAGCAGCATGTTTGTACCCACTACGCACGATTCTGAGGCGAGATTTT
GTTCGCGCATGGGTGTGCGTTTTCCCAGGGTCATATAGCGACGCTATGTG
TGGATGTCGCTGTTTGTGGCTAGAGGTGTGTTACTTATCATGTACTTCTG
TGCCATCGGTTCCCGTGGTGAGGGCTGCAATTTGCCGAGGTTCGGTAGTT
GTCTTTGATCGCTAGGTGATCATTGCAATGTGTGCATGGTGTCCTATCTA
CTGAAACGTGCTGTGTGTAACAAAGACGTGGACATAAAGTTCTCCTACGG
CGGCTGGATCTTCCAGCTCGTACTCTTAACACCATTGTATGGTAGGCACG
TTCAGTATCACAGATGCAAAAGCTGTATAAGAATTAGTTAGCCGGCCAAC
CACAAAAACCTTGCTTCCACACGTGCCTTGCAAGCGTAGGAAAAATTAGG
GACAGGTTAGGAAAGAATGTGAACAAGAGGGCATATCACCGACAACAACA
AGGACGGCAGGAGGGGAGGTCGCACTCAATGCATCGACACTCTCAATGTT
CTCAAAGTGCTTTGCCTCCTTTGGTTGGTAGATGTTTTAGCGTGAGAACA
TCTCATTTTAGACTTGTGTTGTTCTGTAAGTCGACTCGTGCTCCAATCCG
CCTTCTTCGGGCCGAAGCTGACTGACGCCGCCATGGCCAAACACGAACTG
GTATCACGCAGCCAGATTCTAAGATTGCCATAGATGGCAACGTGATCGTT
GTTCTGGGTAAGTCTTCTTCTGATCCGGCTTCAAGCCTTGCTTCGAACCT
TTCACAACGATGAGGCAGAAGCGAGACCCGACTGCCGGTAGGGGTCTAGG
TGACGTAGGAT back to topprotein sequence of EsuBft446_4a-0001 >EsuBft446_4 ID=EsuBft446_4|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=237bp
MPKIAGFDGKEVEYVEVHDEPFHRRQFSNDYVYIYIAGFRRVPGETSLWH
RHSENTLYVCVGHGAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQV
CLLPENTHNSHFFAMEILRPPPTCSRRALDHRCYSLREEDSRPGLARVYD
FRLEPGESTGPHTLGFSGVVLCLSDGGGSLEADGGVFAGGELSKVGGWKW
IDGPVSANARNAGGSVYQAFVVEWLGEGHSVEGLSRL back to topmRNA from alignment at Scaffold_373:250368..253912+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft446_4a-0001 ID=EsuBft446_4a-0001|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3545bp|location=Sequence derived from alignment at Scaffold_373:250368..253912+ (Ectocarpus subulatus male Bft15b)
TCCTCTGCAGGTCTCACAGCGTAGTACTTTACGATCTCACACACTCGTGT
ATAAGCTGATAGACAGGGTTGCTGGTAGAAAGTCGCTCTGAAGCCTTTTC
ACACGGGTGGGGGGAGAGAATCAGTCTCTGAGCACAATGCCTAAGATCGC
CGGCTTCGACGGGAAGGAGGTAGAGTACGTCGAGGTCCACGATGAGCCAT
TCCACCGACGGCAGTTCAGCAACGACTATGTCTACATTTACATCGCGGGC
TTCAGGCGAGTGTGGCATTCGTAACGAGTGGGGTCAAGAGACTTGACATG
CATCACGCACCGGGTCTGCTGTGCATGTCATTTTTGCTGTACTTGAGTTG
AAGTTCTCCGTGTTTCGTACGACGAGGAGAGTTCTTGTTCCGCAACGACG
CGAGTCAAGGAGGCTGTGATGTCCAAAGATAGCTCTCCCTTGCTCGCCCG
TGTTGCCTTCGCCCGACAGGCCCGGCGAAACCTCGCTTTGGCATCGCCAT
TCCGAGAACACCCTGTACGTGTGCGTGGGACATGGAGCGGCGGCCCTCAA
CCGGCCAACGGACAAGGTATAAGCTTGCCCGTTGGCACCTTCTTACCCCT
TCGTATCCGGCGTGATCGCCATGTGCATGCATGTTGCTGGAAAATGGAAA
TTCACCGACCGTGTGGTGTCCATGATGCTTGCCTCCGAACAGGGCATGAT
AGTCTGTCCTGCTGAGGTGAGGACTTGCTTGTTGAGCATCAGATCCATGC
TTTTTGGCACGGATTGTACAAGCCAACATGCAAAGTCTAGAGGACGTGCT
TATTGGATCTCAGACTTGCCACAGCAAGTGCAGTAGTCCTACATGTCCTT
GTTTTCCTGGAGTGTTGCGTGCGAAGCGAGAAGTGGCAACAACCAGAGCG
TTTACACAGCCTGTTGTGTTCAGACTGACGTCCGGAATGTATGGGACGAC
ACACACCCCACCGAGAGAGATGCTACTACTGTACTCTACGGCGCACACCG
ACGGCGAAGTCTGCTGCTGACGGGCAGGGTCTTGCAGCTTGAAGACGCGG
GGTGGATGAAGTTGCAAGATTGTGTGATACGCGGTTGGGGGAAGTGGCAC
TCAAAGGCGAGCCGTCGTCCTTGCCACTAAGTCAGTATCCTGTGTACAAC
GGTCATTTTGGAAGCCCTTCGGTTCTTCAAGGAGCACCTTTCCTCCGATC
CTTGCAAACCTCCAACATCCTACCCCATGTCTCATTACTGATTGACAGCT
CCGCTTTTGACCTGAATCCTCAATGCCCATCTCGTCAGCCGGTGATTCGT
GTTGCCTGATCTCTGCACCTGTACTCAGATTGACAACCATAGCCATGTCA
TTCTTAGAAAGCAAGTTGCCTGCGCTAATACAGCTCTAATTCATGTCAGG
GAAACCAGGTGGCTGTCAAATGTGTGTGTCGGAGACGACGACGCACGGTA
TGCAAACTGCGAAAGCCCCTATCCACACGAGGAAGTTATTCCACAGCCGG
TTTTCTTCGCAGCGACACATTGCAGCGACAAGCGACAGAGTCGAAATGAA
TCCCCCCCAGCTTCTTTTCGTGGGGCTCTTCCGTTGCTGTTCTTACCATC
GTTTTATCCAAGTTGAGCAGGGGGGGTGGAGGGGAGTTGTGGCATTGAAG
GCATTCCGTTTTTTGTTGGTGTAGTTCAAGGCGGAGAACCTACATACCAT
GTATCTACCTCATTTGTCTAGTCTATACAGAACATGCCACTTGGCATCGA
ACTTTGACGTCTTCAGGGCGGCTCTCTCGAGGCCCACCACCAAATGCACG
TTGTCACGCTTTTTCGTTGCCGCATACCATCAATTTTTACGTTTTCCCTC
AAATGCCACAACCGTCACTTCTGTTTGCCAACGGACCGTATCCCGCTGGT
TGTCGCCTCGACTTTTCTTGGCCTCTGCCTGGACCCTATCCATACAACAA
CCGTCACTTTTGTGTGCTATCGGACCCTGAACCCGCTGGTTGCCACGCCG
ACTCTCTCCCTCTTCCTGAACCTTATCCATACCGCAACCGTCACCTTTTT
TTGCCAACGGACCCTATCCCACTGGATGCCACCCCGACCCTTAGCCTCTG
CCCAAACCTTATCCATACCACAACCGTCACTTTTGTGTGCTAACAAGCCC
TTGTCCCGCTGCTCGTCGCCCCGACTGTGCCCCGCTCCGAAGGAGCCTTT
CGTACACCACGCTTCGCCGGGGGACCTCTGGTGGGCCATGAGCAAGAGCG
CCCCCTACGTGCACCAGGTCTGCCTCCTTCCGGAGAACACTCACAACTCG
CACTTCTTCGCCATGGAAATCCTCAGACCGCCACCCACTTGCTCGAGACG
CGCCCTCGACCACCGCTGCTACAGCCTCCGGGAGGAAGACAGCCGCCCGG
GGCTCGCTCGCGTCTACGACTTCAGGCTTGAGCCCGGCGAATCTACGGGG
CCTCACACGCTGGGATTCAGCGGGGTGGTGCTCTGCCTTTCCGATGGCGG
GGGGAGCCTGGAGGCCGATGGCGGCGTCTTTGCGGGCGGAGAGCTGTCGA
AGGTCGGGGGGTGGAAGTGGATCGACGGCCCTGTCAGCGCCAACGCGCGA
AATGCGGGCGGCAGTGTCTACCAGGCTTTTGTGGTGGAGTGGCTGGGGGA
AGGCCACTCGGTGGAAGGCTTGTCCAGGCTTTGATTGGAGCAGCATGTTT
GTACCCACTACGCACGATTCTGAGGCGAGATTTTGTTCGCGCATGGGTGT
GCGTTTTCCCAGGGTCATATAGCGACGCTATGTGTGGATGTCGCTGTTTG
TGGCTAGAGGTGTGTTACTTATCATGTACTTCTGTGCCATCGGTTCCCGT
GGTGAGGGCTGCAATTTGCCGAGGTTCGGTAGTTGTCTTTGATCGCTAGG
TGATCATTGCAATGTGTGCATGGTGTCCTATCTACTGAAACGTGCTGTGT
GTAACAAAGACGTGGACATAAAGTTCTCCTACGGCGGCTGGATCTTCCAG
CTCGTACTCTTAACACCATTGTATGGTAGGCACGTTCAGTATCACAGATG
CAAAAGCTGTATAAGAATTAGTTAGCCGGCCAACCACAAAAACCTTGCTT
CCACACGTGCCTTGCAAGCGTAGGAAAAATTAGGGACAGGTTAGGAAAGA
ATGTGAACAAGAGGGCATATCACCGACAACAACAAGGACGGCAGGAGGGG
AGGTCGCACTCAATGCATCGACACTCTCAATGTTCTCAAAGTGCTTTGCC
TCCTTTGGTTGGTAGATGTTTTAGCGTGAGAACATCTCATTTTAGACTTG
TGTTGTTCTGTAAGTCGACTCGTGCTCCAATCCGCCTTCTTCGGGCCGAA
GCTGACTGACGCCGCCATGGCCAAACACGAACTGGTATCACGCAGCCAGA
TTCTAAGATTGCCATAGATGGCAACGTGATCGTTGTTCTGGGTAAGTCTT
CTTCTGATCCGGCTTCAAGCCTTGCTTCGAACCTTTCACAACGATGAGGC
AGAAGCGAGACCCGACTGCCGGTAGGGGTCTAGGTGACGTAGGAT back to topCoding sequence (CDS) from alignment at Scaffold_373:250368..253912+ >EsuBft446_4a-0001 ID=EsuBft446_4a-0001|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=714bp|location=Sequence derived from alignment at Scaffold_373:250368..253912+ (Ectocarpus subulatus male Bft15b)
ATGCCTAAGATCGCCGGCTTCGACGGGAAGGAGGTAGAGTACGTCGAGGT
CCACGATGAGCCATTCCACCGACGGCAGTTCAGCAACGACTATGTCTACA
TTTACATCGCGGGCTTCAGGCGAGTGCCCGGCGAAACCTCGCTTTGGCAT
CGCCATTCCGAGAACACCCTGTACGTGTGCGTGGGACATGGAGCGGCGGC
CCTCAACCGGCCAACGGACAAGGAGCCTTTCGTACACCACGCTTCGCCGG
GGGACCTCTGGTGGGCCATGAGCAAGAGCGCCCCCTACGTGCACCAGGTC
TGCCTCCTTCCGGAGAACACTCACAACTCGCACTTCTTCGCCATGGAAAT
CCTCAGACCGCCACCCACTTGCTCGAGACGCGCCCTCGACCACCGCTGCT
ACAGCCTCCGGGAGGAAGACAGCCGCCCGGGGCTCGCTCGCGTCTACGAC
TTCAGGCTTGAGCCCGGCGAATCTACGGGGCCTCACACGCTGGGATTCAG
CGGGGTGGTGCTCTGCCTTTCCGATGGCGGGGGGAGCCTGGAGGCCGATG
GCGGCGTCTTTGCGGGCGGAGAGCTGTCGAAGGTCGGGGGGTGGAAGTGG
ATCGACGGCCCTGTCAGCGCCAACGCGCGAAATGCGGGCGGCAGTGTCTA
CCAGGCTTTTGTGGTGGAGTGGCTGGGGGAAGGCCACTCGGTGGAAGGCT
TGTCCAGGCTTTGA back to top
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