Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft446_2 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 223 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CAGCATGGGGGAGGCTAAATTATCCTTCGGATTAAAAACAGAAACAGCAG
CAACAGAAGACAACTGCACCCGTCTACCAAGGCTATTACCTAGTCCTCGA
GTTCGTTTAGGAGTACTTTCACCAGTATCCTCCTTGTTTTCGCTACCATC
ATTTTTATCCTCATTTCGACAAGAAGAATCTCTGGGCAGTTCTTCCCTAG
CCCTACGTTTCTTGTTGTGGGGAAGGTCATCTGGCTCAAACCCTTTGCTC
TCTTCCACTCCTCCATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTT
TCTTTCCTTTCCCTTTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCT
CACTACTATCGTTGTCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGT
TGGTCGATCAGTAGCCCATGACGTTTGAGCACATCGAGAGTTCGCATCGA
CAGAAAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTAT
GAAAAGCTTTCAGGCGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGG
CAAAAAGCTTCGTGCGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATT
GGTGCCTTTGCCAAGACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGG
TAGATCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCA
GCTCGATCTTCGAGGGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCT
TCGACCTGCTGATGGGTTGACGATTGTTACGTCGATCAGAATGGACTTGG
TGCAGAGGTCCTCTTCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACC
AAATCCATCTTGTGTACAATTGTAGCCCCTTTTCCCTACCAGTGCCTGTG
GTAAAAGGGGAAGAATCCTCAACGGCGATGGGCATATGGCACTCGCGCAG
TGTCTTGAGGACCACTCGAACCATCCTGTTATGGAGGAAGGTTGAGGCGC
CGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCTCAAGCGGTCCTTGCAT
GGTAACAATGCACCTGCACCACAAAGTTTGCCTGTGTTGCAGTCTGCTCG
ATCGTGACTCCCCAGTACACGACCGATTGACTCTCGATATAGATCAGGCA
GCATTCTTTCATCTGCTGACAACCCTTGCGTTGTCAACCACGACAAAACT
CCCTTGCCTTTCGCTTCCTCCAAGCGGATCAACGCCCTCTTCTTTGGCGT
TTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCCACCATGTGGCGCACTG
CTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGCTCCAAAGACTTGGTAG
TGTTGACCAAATTCATTTCGGCTGAAGGTAGACGGTGGTTGATGTTCTAC
GTCAGGGTTTCCATCTTCACGGGGTTTTCCCGCCTTCCCTGCTTCCAACA
AGTAAACTCCTTTGAGGGCGGGGGTTAACTCATCACTTGTGGCAAGTTTA
GCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGTGATGATTTC
CTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAATCCTGTCGGTAGCTGGG
CAAGCCGGGGTAGACATTGCTCAACTGTGTATCCTGTCGATGCTTGCACT
GACTTGGAGAACACCAGCGCTTGCCCTGCCACAAAAGCCGATTCTCGAAT
GAGAACATTGCTCGTGATTCCTAGTCCTCCTTCTCGCATGGGTAGGTGCA
CCTGCGCTCGAGCTGTCCCTTTGAAGAAATCTACCTCCTCGCTCTTCGTC
GGGTCTGCGCGTACCTCTTTGACCGTTGGTATTCTCATGCTGTCGGCCAT
CTTGCCAAGGACGATCTTACTCATTGCCCACATCATCATGTTGTCATGTA
TTTTTGCGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTCAGCAGATGG
AACAAACGTGGCACACCAGATGAACACAGCAGTTGATAGCTGACTTGGGG
GTCGTCAATCGTTGCTAGGCGGAGTATCAATTCCGCCGGGTCACCACGGG
CGATTTTGGAAACGAAATTCCTCTGGAACTCTTCTGTTCCTACTGGGATC
CCGACAACTGGGATGCCACCTTCAGCAACTGACAGACCAATTTTCGTCAA
TTGTTGCTGTTCGTCGTTTGTCAAAGAGGACGTGCAAAGACCTTCGGGGA
AAAGCACTTTGGATTTCGGGAGACTGAGCTCAATT back to topprotein sequence of EsuBft446_2a-0001 >EsuBft446_2 ID=EsuBft446_2|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MFSCSVVVFVLLSFLSLSIAFVTPKRITLTTIVVAEVPTDWPWWKLVDQ back to topmRNA from alignment at Scaffold_373:269019..271253- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)
CAGCATGGGGGAGGCTAAATTATCCTTCGGATTAAAAACAGAAACAGCAG
CAACAGAAGACAACTGCACCCGTCTACCAAGGCTATTACCTAGTCCTCGA
GTTCGTTTAGGAGTACTTTCACCAGTATCCTCCTTGTTTTCGCTACCATC
ATTTTTATCCTCATTTCGACAAGAAGAATCTCTGGGCAGTTCTTCCCTAG
CCCTACGTTTCTTGTTGTGGGGAAGGTCATCTGGCTCAAACCCTTTGCTC
TCTTCCACTCCTCCATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTT
TCTTTCCTTTCCCTTTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCT
CACTACTATCGTTGTCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGT
TGGTCGATCAGTAGCCCATGACGTTTGAGCACATCGAGAGTTCGCATCGA
CAGAAAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTAT
GAAAAGCTTTCAGGCGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGG
CAAAAAGCTTCGTGCGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATT
GGTGCCTTTGCCAAGACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGG
TAGATCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCA
GCTCGATCTTCGAGGGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCT
TCGACCTGCTGATGGGTTGACGATTGTTACGTCGATCAGAATGGACTTGG
TGCAGAGGTCCTCTTCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACC
AAATCCATCTTGTGTACAATTGTAGCCCCTTTTCCCTACCAGTGCCTGTG
GTAAAAGGGGAAGAATCCTCAACGGCGATGGGCATATGGCACTCGCGCAG
TGTCTTGAGGACCACTCGAACCATCCTGTTATGGAGGAAGGTTGAGGCGC
CGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCTCAAGCGGTCCTTGCAT
GGTAACAATGCACCTGCACCACAAAGTTTGCCTGTGTTGCAGTCTGCTCG
ATCGTGACTCCCCAGTACACGACCGATTGACTCTCGATATAGATCAGGCA
GCATTCTTTCATCTGCTGACAACCCTTGCGTTGTCAACCACGACAAAACT
CCCTTGCCTTTCGCTTCCTCCAAGCGGATCAACGCCCTCTTCTTTGGCGT
TTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCCACCATGTGGCGCACTG
CTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGCTCCAAAGACTTGGTAG
TGTTGACCAAATTCATTTCGGCTGAAGGTAGACGGTGGTTGATGTTCTAC
GTCAGGGTTTCCATCTTCACGGGGTTTTCCCGCCTTCCCTGCTTCCAACA
AGTAAACTCCTTTGAGGGCGGGGGTTAACTCATCACTTGTGGCAAGTTTA
GCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGTGATGATTTC
CTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAATCCTGTCGGTAGCTGGG
CAAGCCGGGGTAGACATTGCTCAACTGTGTATCCTGTCGATGCTTGCACT
GACTTGGAGAACACCAGCGCTTGCCCTGCCACAAAAGCCGATTCTCGAAT
GAGAACATTGCTCGTGATTCCTAGTCCTCCTTCTCGCATGGGTAGGTGCA
CCTGCGCTCGAGCTGTCCCTTTGAAGAAATCTACCTCCTCGCTCTTCGTC
GGGTCTGCGCGTACCTCTTTGACCGTTGGTATTCTCATGCTGTCGGCCAT
CTTGCCAAGGACGATCTTACTCATTGCCCACATCATCATGTTGTCATGTA
TTTTTGCGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTCAGCAGATGG
AACAAACGTGGCACACCAGATGAACACAGCAGTTGATAGCTGACTTGGGG
GTCGTCAATCGTTGCTAGGCGGAGTATCAATTCCGCCGGGTCACCACGGG
CGATTTTGGAAACGAAATTCCTCTGGAACTCTTCTGTTCCTACTGGGATC
CCGACAACTGGGATGCCACCTTCAGCAACTGACAGACCAATTTTCGTCAA
TTGTTGCTGTTCGTCGTTTGTCAAAGAGGACGTGCAAAGACCTTCGGGGA
AAAGCACTTTGGATTTCGGGAGACTGAGCTCAATT back to topCoding sequence (CDS) from alignment at Scaffold_373:269019..271253- >EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)
ATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTTTCTTTCCTTTCCCT
TTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGTTGGTCGATCAGTAG back to top
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