EsuBft446_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft446_2a-0001
Unique Name	EsuBft446_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:269019..271253 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft446_2
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	223
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft446_2a	EsuBft446_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 269019..271253 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft446_2a-0001-exon	EsuBft446_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 269019..271253 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft446_2a-0001-exon	agat-three_prime_utr-16029	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 269019..270839 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft446_2a-0001-cds	EsuBft446_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 270840..270989 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft446_2a-0001-exon	agat-five_prime_utr-10219	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_373 270990..271253 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft446_2a-0001	EsuBft446_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 270840..270989 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:269019..271253-
coding sequence from alignment at Scaffold_373:269019..271253-

spliced messenger RNA

>EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCATGGGGGAGGCTAAATTATCCTTCGGATTAAAAACAGAAACAGCAG
CAACAGAAGACAACTGCACCCGTCTACCAAGGCTATTACCTAGTCCTCGA
GTTCGTTTAGGAGTACTTTCACCAGTATCCTCCTTGTTTTCGCTACCATC
ATTTTTATCCTCATTTCGACAAGAAGAATCTCTGGGCAGTTCTTCCCTAG
CCCTACGTTTCTTGTTGTGGGGAAGGTCATCTGGCTCAAACCCTTTGCTC
TCTTCCACTCCTCCATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTT
TCTTTCCTTTCCCTTTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCT
CACTACTATCGTTGTCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGT
TGGTCGATCAGTAGCCCATGACGTTTGAGCACATCGAGAGTTCGCATCGA
CAGAAAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTAT
GAAAAGCTTTCAGGCGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGG
CAAAAAGCTTCGTGCGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATT
GGTGCCTTTGCCAAGACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGG
TAGATCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCA
GCTCGATCTTCGAGGGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCT
TCGACCTGCTGATGGGTTGACGATTGTTACGTCGATCAGAATGGACTTGG
TGCAGAGGTCCTCTTCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACC
AAATCCATCTTGTGTACAATTGTAGCCCCTTTTCCCTACCAGTGCCTGTG
GTAAAAGGGGAAGAATCCTCAACGGCGATGGGCATATGGCACTCGCGCAG
TGTCTTGAGGACCACTCGAACCATCCTGTTATGGAGGAAGGTTGAGGCGC
CGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCTCAAGCGGTCCTTGCAT
GGTAACAATGCACCTGCACCACAAAGTTTGCCTGTGTTGCAGTCTGCTCG
ATCGTGACTCCCCAGTACACGACCGATTGACTCTCGATATAGATCAGGCA
GCATTCTTTCATCTGCTGACAACCCTTGCGTTGTCAACCACGACAAAACT
CCCTTGCCTTTCGCTTCCTCCAAGCGGATCAACGCCCTCTTCTTTGGCGT
TTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCCACCATGTGGCGCACTG
CTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGCTCCAAAGACTTGGTAG
TGTTGACCAAATTCATTTCGGCTGAAGGTAGACGGTGGTTGATGTTCTAC
GTCAGGGTTTCCATCTTCACGGGGTTTTCCCGCCTTCCCTGCTTCCAACA
AGTAAACTCCTTTGAGGGCGGGGGTTAACTCATCACTTGTGGCAAGTTTA
GCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGTGATGATTTC
CTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAATCCTGTCGGTAGCTGGG
CAAGCCGGGGTAGACATTGCTCAACTGTGTATCCTGTCGATGCTTGCACT
GACTTGGAGAACACCAGCGCTTGCCCTGCCACAAAAGCCGATTCTCGAAT
GAGAACATTGCTCGTGATTCCTAGTCCTCCTTCTCGCATGGGTAGGTGCA
CCTGCGCTCGAGCTGTCCCTTTGAAGAAATCTACCTCCTCGCTCTTCGTC
GGGTCTGCGCGTACCTCTTTGACCGTTGGTATTCTCATGCTGTCGGCCAT
CTTGCCAAGGACGATCTTACTCATTGCCCACATCATCATGTTGTCATGTA
TTTTTGCGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTCAGCAGATGG
AACAAACGTGGCACACCAGATGAACACAGCAGTTGATAGCTGACTTGGGG
GTCGTCAATCGTTGCTAGGCGGAGTATCAATTCCGCCGGGTCACCACGGG
CGATTTTGGAAACGAAATTCCTCTGGAACTCTTCTGTTCCTACTGGGATC
CCGACAACTGGGATGCCACCTTCAGCAACTGACAGACCAATTTTCGTCAA
TTGTTGCTGTTCGTCGTTTGTCAAAGAGGACGTGCAAAGACCTTCGGGGA
AAAGCACTTTGGATTTCGGGAGACTGAGCTCAATT

protein sequence of EsuBft446_2a-0001

>EsuBft446_2 ID=EsuBft446_2|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MFSCSVVVFVLLSFLSLSIAFVTPKRITLTTIVVAEVPTDWPWWKLVDQ

mRNA from alignment at Scaffold_373:269019..271253-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)
CAGCATGGGGGAGGCTAAATTATCCTTCGGATTAAAAACAGAAACAGCAG
CAACAGAAGACAACTGCACCCGTCTACCAAGGCTATTACCTAGTCCTCGA
GTTCGTTTAGGAGTACTTTCACCAGTATCCTCCTTGTTTTCGCTACCATC
ATTTTTATCCTCATTTCGACAAGAAGAATCTCTGGGCAGTTCTTCCCTAG
CCCTACGTTTCTTGTTGTGGGGAAGGTCATCTGGCTCAAACCCTTTGCTC
TCTTCCACTCCTCCATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTT
TCTTTCCTTTCCCTTTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCT
CACTACTATCGTTGTCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGT
TGGTCGATCAGTAGCCCATGACGTTTGAGCACATCGAGAGTTCGCATCGA
CAGAAAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTAT
GAAAAGCTTTCAGGCGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGG
CAAAAAGCTTCGTGCGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATT
GGTGCCTTTGCCAAGACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGG
TAGATCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCA
GCTCGATCTTCGAGGGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCT
TCGACCTGCTGATGGGTTGACGATTGTTACGTCGATCAGAATGGACTTGG
TGCAGAGGTCCTCTTCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACC
AAATCCATCTTGTGTACAATTGTAGCCCCTTTTCCCTACCAGTGCCTGTG
GTAAAAGGGGAAGAATCCTCAACGGCGATGGGCATATGGCACTCGCGCAG
TGTCTTGAGGACCACTCGAACCATCCTGTTATGGAGGAAGGTTGAGGCGC
CGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCTCAAGCGGTCCTTGCAT
GGTAACAATGCACCTGCACCACAAAGTTTGCCTGTGTTGCAGTCTGCTCG
ATCGTGACTCCCCAGTACACGACCGATTGACTCTCGATATAGATCAGGCA
GCATTCTTTCATCTGCTGACAACCCTTGCGTTGTCAACCACGACAAAACT
CCCTTGCCTTTCGCTTCCTCCAAGCGGATCAACGCCCTCTTCTTTGGCGT
TTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCCACCATGTGGCGCACTG
CTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGCTCCAAAGACTTGGTAG
TGTTGACCAAATTCATTTCGGCTGAAGGTAGACGGTGGTTGATGTTCTAC
GTCAGGGTTTCCATCTTCACGGGGTTTTCCCGCCTTCCCTGCTTCCAACA
AGTAAACTCCTTTGAGGGCGGGGGTTAACTCATCACTTGTGGCAAGTTTA
GCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGTGATGATTTC
CTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAATCCTGTCGGTAGCTGGG
CAAGCCGGGGTAGACATTGCTCAACTGTGTATCCTGTCGATGCTTGCACT
GACTTGGAGAACACCAGCGCTTGCCCTGCCACAAAAGCCGATTCTCGAAT
GAGAACATTGCTCGTGATTCCTAGTCCTCCTTCTCGCATGGGTAGGTGCA
CCTGCGCTCGAGCTGTCCCTTTGAAGAAATCTACCTCCTCGCTCTTCGTC
GGGTCTGCGCGTACCTCTTTGACCGTTGGTATTCTCATGCTGTCGGCCAT
CTTGCCAAGGACGATCTTACTCATTGCCCACATCATCATGTTGTCATGTA
TTTTTGCGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTCAGCAGATGG
AACAAACGTGGCACACCAGATGAACACAGCAGTTGATAGCTGACTTGGGG
GTCGTCAATCGTTGCTAGGCGGAGTATCAATTCCGCCGGGTCACCACGGG
CGATTTTGGAAACGAAATTCCTCTGGAACTCTTCTGTTCCTACTGGGATC
CCGACAACTGGGATGCCACCTTCAGCAACTGACAGACCAATTTTCGTCAA
TTGTTGCTGTTCGTCGTTTGTCAAAGAGGACGTGCAAAGACCTTCGGGGA
AAAGCACTTTGGATTTCGGGAGACTGAGCTCAATT

Coding sequence (CDS) from alignment at Scaffold_373:269019..271253-

>EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)
ATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTTTCTTTCCTTTCCCT
TTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGTTGGTCGATCAGTAG