EsuBft446_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft446_12a-0001
Unique NameEsuBft446_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:116854..119665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZX8
ProteomeIdEsuBft446_12
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR001813
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR21141
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Note60s acidic ribosomal protein p1 os:zea mays gn:rpp1a pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length391
Hectar predicted targeting categorysignal peptide
Evalue3.74e-31
EggNOG OGs2D6V1@1|root,2S57R@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K02942
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0006414
GO0003735
GO0005840
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft446_12aEsuBft446_12aEctocarpus subulatus male Bft15bgeneScaffold_373 116854..119665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_12a-0001EsuBft446_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 116854..118867 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_12a-0001-exonagat-exon-79307Ectocarpus subulatus male Bft15bexonScaffold_373 116854..116990 -
EsuBft446_12a-0001-exonagat-exon-79309Ectocarpus subulatus male Bft15bexonScaffold_373 117631..117771 -
EsuBft446_12a-0001-exonEsuBft446_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 118828..118913 -
EsuBft446_12a-0001-exonagat-exon-79308Ectocarpus subulatus male Bft15bexonScaffold_373 119639..119665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_12a-0001-cdsEsuBft446_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 116854..116990 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_12a-0001-exonagat-five_prime_utr-10215Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 118868..118913 -
EsuBft446_12a-0001-exonagat-five_prime_utr-10216Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 119639..119665 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft446_12a-0001 ID=EsuBft446_12a-0001|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=391bp|location=Sequence derived from alignment at Scaffold_373:116854..119665- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGGTGTTCTCCTGTCCCTTTCGTCAGCTTGATCATGTCTCTCTCGGAGC
TCCCAGCACCCCAGAAGAACGACATGGTCGTTAGCCTCGCCGCCCTCCTC
CTGGAGGACGCTGGCTCCGTGCTTACCGCCGAGAACATCAGCGCGGTGGT
GGCGGCCACGAAGAACGAGGTGCCGGCCTACTACCCCACCCTCTTCGCGG
CCATGCTTGAAAAATCCGAGGGCTGCGCGATGTTCTGCAAGATGAGCGCG
GGCGGCGGCGGTGGTGGGGGCGGCGGCGGCGGCGGCGGCGGCGCGGCGGC
ACCGGCTGCCGAGGAGAAGAAGGTAGAGGAGGAGGAAGAGGAGGAGATCG
ACATGGGCGGGGGCATGGACATGTTCGGCGGCGGTGAGTGA
back to top

protein sequence of EsuBft446_12a-0001

>EsuBft446_12 ID=EsuBft446_12|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEG
CAMFCKMSAGGGGGGGGGGGGGGAAAPAAEEKKVEEEEEEEIDMGGGMDM
FGGGE
back to top

mRNA from alignment at Scaffold_373:116854..119665-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft446_12a-0001 ID=EsuBft446_12a-0001|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2812bp|location=Sequence derived from alignment at Scaffold_373:116854..119665- (Ectocarpus subulatus male Bft15b)
CGGGTGTTCTCCTGTCCCTTTCGTCAGGTGAGATGCCGAATGGCTTTGAC
GACGCGGAGAGGCGCTGCTGTAGTGTTTCTCTCCCAGTGTGGATGTTGGA
TCTGATGGTCTAAGTTGTGCGGGGAGCTCAATGTATTGTGTTGCTCGAAC
TCGCCACCCTGAGATATGGCCACGGCTTGGCGGCGAGGTGCTGCTGCTGT
GCTGTGCTGCTATGCTGCAGAGTGATCAGCCTTGTTCCACCTCTTCGTTG
CTCACCCACATTGTTCTGTGCTCTGCCACAGGCTGGATTGAGATGTTCGA
GGGTGTAAGGTGTTTTTTGGAATTGGTGCCTTGGTTTCCGTGCGGACAGC
TAGCGCTGTGGAGGGGATGTATGGCCTACAAGGGTACACACACATGAATG
ATGGTTCACCACATGGCGGGTCATGGTATTTAGTTGCGCTGAGACTGTCT
GGCTAGGGCCAAGTACAACTGCTGGCGGTGAGGTCCAACGCTTGGACCGT
TTCAGACCGTTTTGCAGCTGTGTAGAAAACCCGAAGCGGACCGTGTCGCC
TTTGCAGCGAGCGCGTCGGACAAGCCAGCCCAAACAGTTTGTACTCGTCC
AGGTAGGCAGTAAGCAACAATCGTCCCTCGTTCGGAGGACAGCAGTGCCG
TATAGGTGTGTGGACTATCCGCGACCTTCTGCTCTCTGGTGTGGAAGTAT
GGGATATCCATCAACCGGCAAATGACCTTGGTGCCTTTCCCTTTTCCAGC
AGCTTGATCATGTCTCTCTCGGAGCTCCCAGCACCCCAGAAGAACGACAT
GGTCGTTAGCCTCGCCGCCCTCCTCCTGGAGGACGCTGGTGAGTCTTGCA
TAACTCTTTCCTCTTTCCAGTCGCAGCAGCGGCTGGAAACAAGACAATGC
TTGCACTCTAAATGCAGGTTGCTGAAAGATGCCAGGACACGAGTTTTTCA
AGCTCGATTTCTCCACAATGAAGAATGTGTGCAGTTCAATGATTCACTGA
CGAGTGTCGTTTTCGGCGGTAAATACCTGTTTTTGCTGCGGAGTGTTCGA
GCTCTGAAAACCGGTCCAGGGTGTGTGGTGTGTGGTATCTTGCGTCATGC
AACCTGCGGTAGGCAGCTATGTAGTTGCGGAGAAACTTTCATTCAACAGA
AAACATGCGTTTTTCGTCTGGGGGCGTACGGCGCTACACTTCGCTACTTG
GAGAGCAGCTCGGCGCTTCTTTTGGCCGAATGCACAGTAGTTGGATGGCT
TAGTGGCGCTTCTACTTGCCAGGTGTTTGCCAGTCCACGAAGAAAAGGGC
GCAAACTTATCTCACCCCCTTGCCGACGTGTTCCTCCCTGGCAATCATCA
GCTTGTTGCTTTGGAAAACCGCGCTCATGCCGCGGCACAATGTTCGACGG
AAACCGCTCTCATGCCGCGGCAACCTTTCTCACGTCTGTAGATATGCCTA
CGTCGAGAGCATGTTGTATCGACGCGCTTGGTTGCTACATGTTGTCGGCG
GTGCAGCCCCGTGCCACCATCCTGTCGGTGCTGCTTGTGTACATTGCAAG
TGCGGCGTAGGTGAGGTTGCAAAGAAACGGGAAGCCGCGTGTCGCGGGCT
ATGCAGCTAAATAGCACATGAGCACGCCTCGTGAATCGCATGCGCGTGGT
ACCCTTGGCTCTCGTTGTTTCGTGTGAGTCCCTCTGGTGACGGTTCATAT
TTGCCACCATGACAACAGTCGTCAGTATTGTTGGCAACACGCACGCCTGC
CATTGTAAGAGAAATGCAGAACGTCTCCTCCGAAAGAACATTGCCGAGAT
CCCTCCCGACCCACCGATGGTTTCTCACCCACCACACGTCTTTCTGCTCT
TGTCCCTCGTTGCTATTCGCTATCGACCGCATCCCTCATGGCAGGCTCCG
TGCTTACCGCCGAGAACATCAGCGCGGTGGTGGCGGCCACGAAGAACGAG
GTGCCGGCCTACTACCCCACCCTCTTCGCGGCCATGCTTGAAAAATCCGA
GGGCTGCGCGATGTTCTGCAAGATGAGCGCGGGCGGTGAGCCGTTTTTTT
TTTGTGTTCCTTGGTCCAGCAGGCAACACGGGACCCTTGATTGGTTGGAA
CGTGCGCCGGCGGCGTGCTTTTCATTTCGTTTTTACTGCTGCTTGATCAG
TCCAAACGATGCAACAGGAAGCGTGGCGCAGCTCGGCGTAAATCGGTTTC
ATTGCTGCTCAGGCAGTCCAGACGGCAAAGCATACAGTCATGGCTTTTGG
TATATATCGTAGATGCCCGACGTGGGGGGTTGCTGATGGCGTGTCGGCCT
TGCTTGCAGGAAGAAGCGTCGCTACCGCTGCTTGCATAAAAATCGGGGAT
CGAGCGGGCTTGTTGACACCGGCCGTGTGTGTTATCTACTTGAGGGATCA
GCAAGTACCAATTTTTGCGTAAAGAGATACCTAGCTCGGATGCTCAGAAT
TTCGAGAATCCACGCGGGTCCAACCTGTTGGAAGTTGTGCAGAAAATATT
GACACCGTGCGTGCAACAGCAACGACACAGCGCGACTATACGCTAGTGTG
TCGAAACGGACACATGCTTGCAAGCACTCACGTTCATTTCTGGACATTTT
CGTTTCGGCCCAACATCATCCTACGGAACATTTAAATTTCGCTGCCGTGC
AAACCTGCAACTTGGTTTTCTGTAGGCGGCGGTGGTGGGGGCGGCGGCGG
CGGCGGCGGCGGCGCGGCGGCACCGGCTGCCGAGGAGAAGAAGGTAGAGG
AGGAGGAAGAGGAGGAGATCGACATGGGCGGGGGCATGGACATGTTCGGC
GGCGGTGAGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_373:116854..119665-

>EsuBft446_12a-0001 ID=EsuBft446_12a-0001|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_373:116854..119665- (Ectocarpus subulatus male Bft15b)
ATGGTCGTTAGCCTCGCCGCCCTCCTCCTGGAGGACGCTGGCTCCGTGCT
TACCGCCGAGAACATCAGCGCGGTGGTGGCGGCCACGAAGAACGAGGTGC
CGGCCTACTACCCCACCCTCTTCGCGGCCATGCTTGAAAAATCCGAGGGC
TGCGCGATGTTCTGCAAGATGAGCGCGGGCGGCGGCGGTGGTGGGGGCGG
CGGCGGCGGCGGCGGCGGCGCGGCGGCACCGGCTGCCGAGGAGAAGAAGG
TAGAGGAGGAGGAAGAGGAGGAGATCGACATGGGCGGGGGCATGGACATG
TTCGGCGGCGGTGAGTGA
back to top