EsuBft4308_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4308_5a-0001
Unique NameEsuBft4308_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:27211..27896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5K1
ProteomeIdEsuBft4308_5
Protein domainsIPR002048
Protein domainsIPR011992
Protein domainsIPR018247
Protein domainsSSF47473
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length39
Hectar predicted targeting categoryother localisation
Evalue2.36e-61
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Descriptioninterleukin-8 biosynthetic process
COG categoryS
BRITEko00000,ko00001
Cross References
External references for this mRNA
DatabaseAccession
GO0005509
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_5aEsuBft4308_5aEctocarpus subulatus male Bft15bgeneScaffold_372 27211..27896 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_5a-0001-exonagat-exon-95150Ectocarpus subulatus male Bft15bexonScaffold_372 27211..27581 -
EsuBft4308_5a-0001-exonEsuBft4308_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 27872..27896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_5a-0001-cdsEsuBft4308_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 27211..27581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_5a-0001EsuBft4308_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 27211..27896 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4308_5a-0001 ID=EsuBft4308_5a-0001|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_372:27211..27896- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTGTAGCGACCGACGTCCCGGCCCGGGCGCTCAAGACGTTGCTTC
AGAATCCGTCGACAGCCGCCTTTCAACCCCGCGAAGACCGGCCAGTACAT
CCCGCAAGCGACGCCTTCCAACCGCCGGCTCGAGCGAGAGCTCCAGAGAC
GATCCGTCTGACGGAAGGAGCAGTGACTGCAGCAGTAGCACCGTCACGAA
GAGCAGCAGAGGCAGGGACGGCGTGAAGACGCCCTTCGACATGGCCAAGC
ACGTCTTCCACCTGCTCTTTCTAGAGGTGGACTTGGACCGGTCCGGATGC
ATCGACAACAAGGAGTTCGGGGAGATGCTGCTACAGCTGGGGAAGAACAT
CGGGCCCGACGTCGCGCGCCACTGTATCGTCAGGTGCATGCGGTAG
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protein sequence of EsuBft4308_5a-0001

>EsuBft4308_5 ID=EsuBft4308_5|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MTCSDRRPGPGAQDVASESVDSRLSTPRRPASTSRKRRLPTAGSSESSRD
DPSDGRSSDCSSSTVTKSSRGRDGVKTPFDMAKHVFHLLFLEVDLDRSGC
IDNKEFGEMLLQLGKNIGPDVARHCIVRCMR
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mRNA from alignment at Scaffold_372:27211..27896-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4308_5a-0001 ID=EsuBft4308_5a-0001|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=686bp|location=Sequence derived from alignment at Scaffold_372:27211..27896- (Ectocarpus subulatus male Bft15b)
ATGACTTGTAGCGACCGACGTCCCGGTGAGAATCATGAAATTACCCTAGA
TCTTGCCAACATGCGCGCGCACTCGAGGGGGCCAGCTAGGATTATCGTGG
CGGCCGAGCTGTCCAACCGTTCCCGCGAGGAGTTCGCCTCTGGCAAAAAA
CACGCGAATTTCGCGAAGATTTTCCCGCACCGACGCAGTCACGGCATATT
TACCAATGTGCGCGCTATAACCCGCCCGGATTCGACGGCGAAGCGTGGCC
ATTGGATTAATAACGAAGGCAAATCAGTACCCCCTCGCCCACCGCACCCC
TCAGCCGTTTAGCAGGCCCGGGCGCTCAAGACGTTGCTTCAGAATCCGTC
GACAGCCGCCTTTCAACCCCGCGAAGACCGGCCAGTACATCCCGCAAGCG
ACGCCTTCCAACCGCCGGCTCGAGCGAGAGCTCCAGAGACGATCCGTCTG
ACGGAAGGAGCAGTGACTGCAGCAGTAGCACCGTCACGAAGAGCAGCAGA
GGCAGGGACGGCGTGAAGACGCCCTTCGACATGGCCAAGCACGTCTTCCA
CCTGCTCTTTCTAGAGGTGGACTTGGACCGGTCCGGATGCATCGACAACA
AGGAGTTCGGGGAGATGCTGCTACAGCTGGGGAAGAACATCGGGCCCGAC
GTCGCGCGCCACTGTATCGTCAGGTGCATGCGGTAG
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Coding sequence (CDS) from alignment at Scaffold_372:27211..27896-

>EsuBft4308_5a-0001 ID=EsuBft4308_5a-0001|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_372:27211..27896- (Ectocarpus subulatus male Bft15b)
ATGACTTGTAGCGACCGACGTCCCGGCCCGGGCGCTCAAGACGTTGCTTC
AGAATCCGTCGACAGCCGCCTTTCAACCCCGCGAAGACCGGCCAGTACAT
CCCGCAAGCGACGCCTTCCAACCGCCGGCTCGAGCGAGAGCTCCAGAGAC
GATCCGTCTGACGGAAGGAGCAGTGACTGCAGCAGTAGCACCGTCACGAA
GAGCAGCAGAGGCAGGGACGGCGTGAAGACGCCCTTCGACATGGCCAAGC
ACGTCTTCCACCTGCTCTTTCTAGAGGTGGACTTGGACCGGTCCGGATGC
ATCGACAACAAGGAGTTCGGGGAGATGCTGCTACAGCTGGGGAAGAACAT
CGGGCCCGACGTCGCGCGCCACTGTATCGTCAGGTGCATGCGGTAG
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