EsuBft4308_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4308_4a-0001
Unique NameEsuBft4308_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:28861..29316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4308_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length33
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_4aEsuBft4308_4aEctocarpus subulatus male Bft15bgeneScaffold_372 28861..29316 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_4a-0001-exonEsuBft4308_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 28861..28892 +
EsuBft4308_4a-0001-exonagat-exon-95149Ectocarpus subulatus male Bft15bexonScaffold_372 29016..29316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_4a-0001-cdsEsuBft4308_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 28861..28892 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_4a-0001-exonagat-three_prime_utr-15676Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 29080..29316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_4a-0001EsuBft4308_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 28861..29079 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4308_4a-0001 ID=EsuBft4308_4a-0001|Name=EsuBft4308_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=333bp|location=Sequence derived from alignment at Scaffold_372:28861..29316+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGGTCTCTGACGGAGAAATCGATGAGGGAGAGCAGGGAGGGCCG
GAGACAGGGGCGACAGAATCGGCAGGTCCGTGAGGGCAGGAGGTAGAGTC
GGAGAGTCAGGAAGGGTTGGATGAAGAGTTCGTGGAGCCGGGAGGGCAGG
AGGTAGAATCGGAGACACTTCCCCCTGCTACGCACGTAACATCTAATCGT
CGTGCGCAGCATGAGCTTGCTAGTTACAACACTGCTGCGAATCAGAACGA
TGAAGTTAGAAGTGGCAGAACCCGTGCGCAAACTCGGGCCGTAAACCAGG
AGAGCGTATCCGGTCTCGTGGCCACTCTAGGAC
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protein sequence of EsuBft4308_4a-0001

>EsuBft4308_4 ID=EsuBft4308_4|Name=EsuBft4308_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=31bp
MKRSLTEKSMRESREGRRQGRQNRQVREGRR
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mRNA from alignment at Scaffold_372:28861..29316+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4308_4a-0001 ID=EsuBft4308_4a-0001|Name=EsuBft4308_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=456bp|location=Sequence derived from alignment at Scaffold_372:28861..29316+ (Ectocarpus subulatus male Bft15b)
ATGAAGCGGTCTCTGACGGAGAAATCGATGAGGTTGGCAATGTTGATGCA
GGCAGTGTAGGCCAATCCCCCTCTGTGCCATCTTCGCCCGCGATTAATTC
TCCTAGTAGCGCAGCTCCCCCTGTGTCTTCTCCAGCAGACGAGTTCACCG
ATGAGGGAGAGCAGGGAGGGCCGGAGACAGGGGCGACAGAATCGGCAGGT
CCGTGAGGGCAGGAGGTAGAGTCGGAGAGTCAGGAAGGGTTGGATGAAGA
GTTCGTGGAGCCGGGAGGGCAGGAGGTAGAATCGGAGACACTTCCCCCTG
CTACGCACGTAACATCTAATCGTCGTGCGCAGCATGAGCTTGCTAGTTAC
AACACTGCTGCGAATCAGAACGATGAAGTTAGAAGTGGCAGAACCCGTGC
GCAAACTCGGGCCGTAAACCAGGAGAGCGTATCCGGTCTCGTGGCCACTC
TAGGAC
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Coding sequence (CDS) from alignment at Scaffold_372:28861..29316+

>EsuBft4308_4a-0001 ID=EsuBft4308_4a-0001|Name=EsuBft4308_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=96bp|location=Sequence derived from alignment at Scaffold_372:28861..29316+ (Ectocarpus subulatus male Bft15b)
ATGAAGCGGTCTCTGACGGAGAAATCGATGAGGGAGAGCAGGGAGGGCCG
GAGACAGGGGCGACAGAATCGGCAGGTCCGTGAGGGCAGGAGGTAG
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