EsuBft4308_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft4308_3a-0001
Unique Name	EsuBft4308_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_372	contig	Scaffold_372:30354..31328 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra85923
ProteomeId	EsuBft4308_3
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	4776\|Peronosporales
Length	879
Hectar predicted targeting category	other localisation
Evalue	2.33e-29
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QGIS@4776\|Peronosporales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	transposition, RNA-mediated
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft4308_3a	EsuBft4308_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_372 30354..31328 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4308_3a-0001-exon	agat-exon-95148	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 30354..30659 -
EsuBft4308_3a-0001-exon	EsuBft4308_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 30756..31328 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4308_3a-0001-cds	EsuBft4308_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_372 30354..30659 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft4308_3a-0001	EsuBft4308_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_372 30354..31328 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_372:30354..31328-
coding sequence from alignment at Scaffold_372:30354..31328-

spliced messenger RNA

>EsuBft4308_3a-0001 ID=EsuBft4308_3a-0001|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=879bp|location=Sequence derived from alignment at Scaffold_372:30354..31328- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGGTGCCGGGGAGATGTCGGGGCCCGGAGAATCACCGGACCCGGA
AGACGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTCG
AGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGGACAG
ACACACCGTATGAAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGGCCGAAGAGAGATGACGAGCCCGCG
GTGGATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCT
GACGAGGCTAGACATCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCC
ACTCATCCACCAGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTAC
CTGAACTTCACGAAGAACTTCGGCATCACCTACGTACGGGGGTCAGGACT
AGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGAAGACA
GGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGT
GGTGTTCTGTCGTTCATAGCACCCGAGACGAGTGGGGCGAAGATCAAGGT
CCTTGAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCT
CAGCGAGGAGCAAGCACATCGACGTGCGGTTCCACTTAATTCTCGAGCTA
TTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCA
CGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACC
GGAAGGCTCTGATAAACCTACCGATGTAG

protein sequence of EsuBft4308_3a-0001

>EsuBft4308_3 ID=EsuBft4308_3|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=292bp
MQGAGEMSGPGESPDPEDALLATILETGGTGIVEDYICNSLVKEQWDEGQ
THRMKEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPA
VDKPVREAIGCLMWTKLTRLDIAVPRNKLQKIAHSSTRRIWNALVRIMSY
LNFTKNFGITYVRGSGLDLSVFVDASYADNEEDRRSTTGLAGVKEALFVR
GVLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHLILEL
FKSGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALINLPM

mRNA from alignment at Scaffold_372:30354..31328-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft4308_3a-0001 ID=EsuBft4308_3a-0001|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=975bp|location=Sequence derived from alignment at Scaffold_372:30354..31328- (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGTCGGGGCCCGGAGAATCACCGGACCCGGA
AGACGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTCG
AGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGGACAG
ACACACCGTATGAAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGGCCGAAGAGAGATGACGAGCCCGCG
GTGGATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCT
GACGAGGCTAGACATCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCC
ACTCATCCACCAGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTAC
CTGAACTTCACGAAGAACTTCGGCATCACCTACGTACGGGGGTCAGGACT
AGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGAAGACA
GGCGTTCTACGACCGGGCTAGCTGTGACCGTAGGTGGTACCGTAGTGTGT
GCATCCGCCAAGTCGCAGCCAGTGACGGCTCAGTCGACCTCGGAAGCAGA
GTATATGGCAGCTAGGGAGGGCGTGAAGGAGGCGTTGTTTGTGCGTGGTG
TTCTGTCGTTCATAGCACCCGAGACGAGTGGGGCGAAGATCAAGGTCCTT
GAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGC
GAGGAGCAAGCACATCGACGTGCGGTTCCACTTAATTCTCGAGCTATTCA
AGTCGGGCAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCC
GACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACCGGAA
GGCTCTGATAAACCTACCGATGTAG

Coding sequence (CDS) from alignment at Scaffold_372:30354..31328-

>EsuBft4308_3a-0001 ID=EsuBft4308_3a-0001|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=879bp|location=Sequence derived from alignment at Scaffold_372:30354..31328- (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGTCGGGGCCCGGAGAATCACCGGACCCGGA
AGACGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTCG
AGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGGACAG
ACACACCGTATGAAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGGCCGAAGAGAGATGACGAGCCCGCG
GTGGATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCT
GACGAGGCTAGACATCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCC
ACTCATCCACCAGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTAC
CTGAACTTCACGAAGAACTTCGGCATCACCTACGTACGGGGGTCAGGACT
AGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGAAGACA
GGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGT
GGTGTTCTGTCGTTCATAGCACCCGAGACGAGTGGGGCGAAGATCAAGGT
CCTTGAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCT
CAGCGAGGAGCAAGCACATCGACGTGCGGTTCCACTTAATTCTCGAGCTA
TTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCA
CGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACC
GGAAGGCTCTGATAAACCTACCGATGTAG