EsuBft4308_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4308_2a-0001
Unique NameEsuBft4308_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:32022..32701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog3641.EOY19734
ProteomeIdEsuBft4308_2
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl35493|Streptophyta
Length68
Hectar predicted targeting categoryother localisation
Evalue1.36e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionMitochondrial protein
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_2aEsuBft4308_2aEctocarpus subulatus male Bft15bgeneScaffold_372 32022..32701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_2a-0001-exonEsuBft4308_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 32022..32701 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_2a-0001-exonagat-three_prime_utr-15675Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 32022..32329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_2a-0001-cdsEsuBft4308_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 32330..32701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4308_2a-0001EsuBft4308_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 32330..32701 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4308_2a-0001 ID=EsuBft4308_2a-0001|Name=EsuBft4308_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=680bp|location=Sequence derived from alignment at Scaffold_372:32022..32701- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCACACGCGC
AGTTAAGAAGTTATTTCGCATGTACCTCGACTTGGGGGGAAAGATGAAAA
CCAGGAGCTTTGGTGGCAACTGGTACACACTGATCATCAGAGACGATTTC
TCTCATTGGACGCGTGTTTTCTTCTTGAAGCACAAGTCTGACCCAGCGGT
TGGGTTTGCGAAGTTCCTGGCGGACTACCGAACGAAAGGGGTTCCGTGTG
AGGTTGTATCGCACGTACCGACGGTGGCGGCGAGTTCCAGGGGCAGTTTG
CGGAAGTTTGCCGCAGACACGGCATCAAACAAGAGTTCACCCCCCCTCAC
ACGCCAAAACACAACGGTGTAGCGGAGAGAGCGTTAGGGTTGATCACTGA
TGCCGCGCTTGCGTCACGCATCCAAGCGACGCAACTGTTCCCCGACGCAC
CGAACCACCCCGGGTTGTGGGCCGAGGCCATTTCGTGTGCATGCCATCAG
CTGAACTGCGCCGCCACTAAATCAAACGAGGGAGACAAGTCCGCCTACGA
GATGTTCCACGACTCCCCACCGCTTGTCCGGTCTACATACCCGTTTCTCA
AACCAGCCATGTTCAAGTCGAGAAGAAAAGCAAAGTCGCAACCCAAGGGC
GAAAAATGATGGTACCTTGGTCTTGCCCAC
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protein sequence of EsuBft4308_2a-0001

>EsuBft4308_2 ID=EsuBft4308_2|Name=EsuBft4308_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=123bp
MSKGQVKPVQKSTSTRAVKKLFRMYLDLGGKMKTRSFGGNWYTLIIRDDF
SHWTRVFFLKHKSDPAVGFAKFLADYRTKGVPCEVVSHVPTVAASSRGSL
RKFAADTASNKSSPPLTRQNTTV
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mRNA from alignment at Scaffold_372:32022..32701-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4308_2a-0001 ID=EsuBft4308_2a-0001|Name=EsuBft4308_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=680bp|location=Sequence derived from alignment at Scaffold_372:32022..32701- (Ectocarpus subulatus male Bft15b)
ATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCACACGCGC
AGTTAAGAAGTTATTTCGCATGTACCTCGACTTGGGGGGAAAGATGAAAA
CCAGGAGCTTTGGTGGCAACTGGTACACACTGATCATCAGAGACGATTTC
TCTCATTGGACGCGTGTTTTCTTCTTGAAGCACAAGTCTGACCCAGCGGT
TGGGTTTGCGAAGTTCCTGGCGGACTACCGAACGAAAGGGGTTCCGTGTG
AGGTTGTATCGCACGTACCGACGGTGGCGGCGAGTTCCAGGGGCAGTTTG
CGGAAGTTTGCCGCAGACACGGCATCAAACAAGAGTTCACCCCCCCTCAC
ACGCCAAAACACAACGGTGTAGCGGAGAGAGCGTTAGGGTTGATCACTGA
TGCCGCGCTTGCGTCACGCATCCAAGCGACGCAACTGTTCCCCGACGCAC
CGAACCACCCCGGGTTGTGGGCCGAGGCCATTTCGTGTGCATGCCATCAG
CTGAACTGCGCCGCCACTAAATCAAACGAGGGAGACAAGTCCGCCTACGA
GATGTTCCACGACTCCCCACCGCTTGTCCGGTCTACATACCCGTTTCTCA
AACCAGCCATGTTCAAGTCGAGAAGAAAAGCAAAGTCGCAACCCAAGGGC
GAAAAATGATGGTACCTTGGTCTTGCCCAC
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Coding sequence (CDS) from alignment at Scaffold_372:32022..32701-

>EsuBft4308_2a-0001 ID=EsuBft4308_2a-0001|Name=EsuBft4308_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_372:32022..32701- (Ectocarpus subulatus male Bft15b)
ATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCACACGCGC
AGTTAAGAAGTTATTTCGCATGTACCTCGACTTGGGGGGAAAGATGAAAA
CCAGGAGCTTTGGTGGCAACTGGTACACACTGATCATCAGAGACGATTTC
TCTCATTGGACGCGTGTTTTCTTCTTGAAGCACAAGTCTGACCCAGCGGT
TGGGTTTGCGAAGTTCCTGGCGGACTACCGAACGAAAGGGGTTCCGTGTG
AGGTTGTATCGCACGTACCGACGGTGGCGGCGAGTTCCAGGGGCAGTTTG
CGGAAGTTTGCCGCAGACACGGCATCAAACAAGAGTTCACCCCCCCTCAC
ACGCCAAAACACAACGGTGTAG
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