EsuBft429_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft429_3a-0001
Unique Name	EsuBft429_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_562	contig	Scaffold_562:115688..117271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft429_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	158
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft429_3a	EsuBft429_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_562 115688..117271 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_3a-0001-exon	EsuBft429_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_562 115688..117271 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_3a-0001-cds	EsuBft429_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_562 115688..116068 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_3a-0001-exon	agat-three_prime_utr-15632	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_562 116069..117271 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_3a-0001	EsuBft429_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_562 115688..116068 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_562:115688..117271+
coding sequence from alignment at Scaffold_562:115688..117271+

spliced messenger RNA

>EsuBft429_3a-0001 ID=EsuBft429_3a-0001|Name=EsuBft429_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1584bp|location=Sequence derived from alignment at Scaffold_562:115688..117271+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAA
GGCCAATCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAGCAGG
GGCCTTTCCGCATGCTGCCGTTCTTCCAGTCCGGCCTCATGTGTGAGGAT
CGCCGCACCAAGCTCGAGGGCCAGGCCACCCTCTGCTACTACCTGAACGG
CGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCCACCG
GCCGCGTCGTCGACACCAACAACGTGTCGTGGGTGACGTCGGCGCCAGCC
GGCGAGGGGNCTCAAGGCGTCCACCGGCCGCGTCGTCGACACCGACAACG
TGTCGTGGGTGACGTCGGCGCCAGCCGGTGAGGGGGGTTCCGCTGGTATC
ACCGCTGCGCCGACACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAA
CTTTGGCCCAGCACCGAGTCAGTGTGGTGTGTAACAGGGACCATTGTTGT
TGTTGTTTTCTTCACATAAACTCGTGTCAGTTGCTACTCCCAAAATCTAG
CAAAGACTCGGCCCGTGGTCACAACAATGCTAGAGCCATAATACGAAAAT
CTAAAGAACACGCGCACTACTAGCAAGAAAAGGGTACACAAGCCCGACGA
GGTACACCTACAATCCCTGCAGTACCATTGCGTGCTCACACCTGAACTAC
ACGCCCACACACTGCAATTCAACTCCAGCAGCATCACCCCCCTTGTCCCG
CACTTACCCAAAATGAATGTTTGTCGACTACAGCGTACTGCTGTGTCTGT
ACAAAAATAACACCATGGTGCATGGTACACAAGCTCGGGGCATGCACCTG
CTGTCTGAAGTGAGTGCTGTCAGAATGAATCCGTGGACATACGATGAAGA
AGAACAACCAACCAAGCCACCATCATCGCAATTGACAATCGCCCGAATCT
ATCCAGATCATCTGTGTTAGACACAGCAGTGCAAACATCGACTGACTAGG
AATCGTTCCACATTGAAGGGGTCTTCCGCGATGCACATACACATCTAAGG
CACCCAAGTTATCGGCGTCATCTCTGCCGCGCTCTCTACAAAACCAGTGA
CGTCATCGTACACACCCAACAACACCTATTTTCAGGGAAAAAAACGAAAA
ATAATTGACAATACAACCAAGGGATGTTTGTCCGTGCGCCACGGTTCGAT
GCCGTCCGCATGCTCCGGTTCCGGTGATCCCGTGCCGCTGCTCCGGTGCC
GCTTCTCCGGTGCCGCTGAGACCAGTCCTAGCACGACCAAACTCGACCCG
CTTCGCTTCGTGCATGCTCTCGTTGCTGTCCTTCCCAGTCGGCTCCTCGC
TTTCTCCCTCATTGCACTCTAGGGTTCTTGGTCTGAAAATTCTCCCGCCG
AAGGGTCAACCAGCCCGATCAGCTCGTCACCACCTGTCCCCTCCTCCTTT
GATGGCAAAACCAGGTTACTGAAACAGTACAACTCCCTCTAGCAAACTTA
GGGTCGTGTACATTGTGCCCGCCCACCTTTCTGATGGCGTCTGCCTCCGC
GCACAAAGTTGAGATGGGCATTGCTGCCTACACC

protein sequence of EsuBft429_3a-0001

>EsuBft429_3 ID=EsuBft429_3|Name=EsuBft429_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRMLPFFQSGLMCED
RRTKLEGQATLCYYLNGGDNHPSGTVKVLKASTGRVVDTNNVSWVTSAPA
GEGXQGVHRPRRRHRQRVVGDVGASR

mRNA from alignment at Scaffold_562:115688..117271+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft429_3a-0001 ID=EsuBft429_3a-0001|Name=EsuBft429_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1584bp|location=Sequence derived from alignment at Scaffold_562:115688..117271+ (Ectocarpus subulatus male Bft15b)
ATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAA
GGCCAATCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAGCAGG
GGCCTTTCCGCATGCTGCCGTTCTTCCAGTCCGGCCTCATGTGTGAGGAT
CGCCGCACCAAGCTCGAGGGCCAGGCCACCCTCTGCTACTACCTGAACGG
CGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCCACCG
GCCGCGTCGTCGACACCAACAACGTGTCGTGGGTGACGTCGGCGCCAGCC
GGCGAGGGGNCTCAAGGCGTCCACCGGCCGCGTCGTCGACACCGACAACG
TGTCGTGGGTGACGTCGGCGCCAGCCGGTGAGGGGGGTTCCGCTGGTATC
ACCGCTGCGCCGACACCCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAA
CTTTGGCCCAGCACCGAGTCAGTGTGGTGTGTAACAGGGACCATTGTTGT
TGTTGTTTTCTTCACATAAACTCGTGTCAGTTGCTACTCCCAAAATCTAG
CAAAGACTCGGCCCGTGGTCACAACAATGCTAGAGCCATAATACGAAAAT
CTAAAGAACACGCGCACTACTAGCAAGAAAAGGGTACACAAGCCCGACGA
GGTACACCTACAATCCCTGCAGTACCATTGCGTGCTCACACCTGAACTAC
ACGCCCACACACTGCAATTCAACTCCAGCAGCATCACCCCCCTTGTCCCG
CACTTACCCAAAATGAATGTTTGTCGACTACAGCGTACTGCTGTGTCTGT
ACAAAAATAACACCATGGTGCATGGTACACAAGCTCGGGGCATGCACCTG
CTGTCTGAAGTGAGTGCTGTCAGAATGAATCCGTGGACATACGATGAAGA
AGAACAACCAACCAAGCCACCATCATCGCAATTGACAATCGCCCGAATCT
ATCCAGATCATCTGTGTTAGACACAGCAGTGCAAACATCGACTGACTAGG
AATCGTTCCACATTGAAGGGGTCTTCCGCGATGCACATACACATCTAAGG
CACCCAAGTTATCGGCGTCATCTCTGCCGCGCTCTCTACAAAACCAGTGA
CGTCATCGTACACACCCAACAACACCTATTTTCAGGGAAAAAAACGAAAA
ATAATTGACAATACAACCAAGGGATGTTTGTCCGTGCGCCACGGTTCGAT
GCCGTCCGCATGCTCCGGTTCCGGTGATCCCGTGCCGCTGCTCCGGTGCC
GCTTCTCCGGTGCCGCTGAGACCAGTCCTAGCACGACCAAACTCGACCCG
CTTCGCTTCGTGCATGCTCTCGTTGCTGTCCTTCCCAGTCGGCTCCTCGC
TTTCTCCCTCATTGCACTCTAGGGTTCTTGGTCTGAAAATTCTCCCGCCG
AAGGGTCAACCAGCCCGATCAGCTCGTCACCACCTGTCCCCTCCTCCTTT
GATGGCAAAACCAGGTTACTGAAACAGTACAACTCCCTCTAGCAAACTTA
GGGTCGTGTACATTGTGCCCGCCCACCTTTCTGATGGCGTCTGCCTCCGC
GCACAAAGTTGAGATGGGCATTGCTGCCTACACC

Coding sequence (CDS) from alignment at Scaffold_562:115688..117271+

>EsuBft429_3a-0001 ID=EsuBft429_3a-0001|Name=EsuBft429_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_562:115688..117271+ (Ectocarpus subulatus male Bft15b)
ATGGAATCGGCGAAATGGGCCGCCGACGCTCTCAACCAGTCGGCGACCAA
GGCCAATCCCGGGCGGCGCTCGCCGCACGAGATGTTCACCGGCGAGCAGG
GGCCTTTCCGCATGCTGCCGTTCTTCCAGTCCGGCCTCATGTGTGAGGAT
CGCCGCACCAAGCTCGAGGGCCAGGCCACCCTCTGCTACTACCTGAACGG
CGGCGACAACCACCCGAGCGGCACCGTCAAGGTCCTCAAGGCGTCCACCG
GCCGCGTCGTCGACACCAACAACGTGTCGTGGGTGACGTCGGCGCCAGCC
GGCGAGGGGNCTCAAGGCGTCCACCGGCCGCGTCGTCGACACCGACAACG
TGTCGTGGGTGACGTCGGCGCCAGCCGGTGA