EsuBft429_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft429_14a-0001
Unique Name	EsuBft429_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_562	contig	Scaffold_562:261575..263435 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft429_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	154
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft429_14a	EsuBft429_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_562 261575..263435 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_14a-0001-exon	agat-exon-76718	Ectocarpus subulatus male Bft15b	exon	Scaffold_562 261575..262684 +
EsuBft429_14a-0001-exon	EsuBft429_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_562 263003..263435 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_14a-0001-cds	EsuBft429_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_562 261575..262177 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_14a-0001-exon	agat-three_prime_utr-15630	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_562 262178..262684 +
EsuBft429_14a-0001-exon	agat-three_prime_utr-15631	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_562 263003..263435 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft429_14a-0001	EsuBft429_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_562 261575..262177 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_562:261575..263435+
coding sequence from alignment at Scaffold_562:261575..263435+

spliced messenger RNA

>EsuBft429_14a-0001 ID=EsuBft429_14a-0001|Name=EsuBft429_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1543bp|location=Sequence derived from alignment at Scaffold_562:261575..263435+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGTCGGGGACGGCGCTCTGGCCGAAGCCGTCCGCACCACCTCC
GCTCCCGCCGATGCTGCTGTCGGTGACGGCGCTCTGGCCGAACCCGTCCT
CGCCGCCGCCGCTTCTGCCGATGCTGCCGCCGCCGCCGCTGCGGCCGTCT
GTATACCAACGCCAACTCGCTGTTCCTCCGCTGCTGCTGAACGGGCGAAA
GCTGGAGCTGTACCAGGAGCGCCGTTGCAGGAACGTAGAGGTTGCTTCTG
TTGACGAGGCTGCTGCTGTGGCATGGGCTGCTGCTGCACCGATGGCTGTG
GCACGAACCTCTGCTGCACGCACGGTTGTTGCTGCTGCTGCTGAAAGGAA
CACCCTCTGCCAAACACGCCGTACCTCCACTGATGCTGGAACGGTTGCTG
TACGGGAACACCTCCGCATGACTGCTGTAGACCATGCTGCTGTTGACGAG
AAAAACTTCCCCAACAGTCGCGCCGAAAATTTCCACCGCCGACATGAAGA
GCGTGCGGGTCACCGGTCGGCGCTGCCGTCCGCCGCGCAACATTCACGAG
GTCTCTCTCGGCGTGCAGGCTACGCACAAGATTCTCCAAGTCCTTGCGCG
TGAGCGAGCTGTTGGCCATGAGGAGAATGTGGACCTGTTCGTAGTCGGCG
GAGAGGTTCCTTCGAAGCATCGCGAGGACTTCTCTATCTGTGATCGCATC
GCCGTTGACGGCGCGGAGAGTAGACAACACCCTGTCGAACCTAAGAAAAT
ACTCCTTTGGGTCCTCTTCAAGCTGCATCTTCATGTTCGTGAGAGACAGC
TTCAGTGCCTCCTGCTCGGAGTCACTCATCGCCAGGCAGAACTGTTGTGT
GCAGCCTCCCACGCCCCAGACACAGTCCCAACGGCAAGGATTCTAGCCTG
AAAGTTTGCCCCCTTCGTGGCGCGCATCAAGTACTCAAACGCATACTCAT
GATCGCGCACGCGACGCTCACCGTGCCAGCGGACGTTTTCGCTCCTTGGC
AGCCCGTTGAGGAGCCAGATGCGTTGGTCTGGACTCGCCGGCTTGGCGAG
TGTGTGTGATAGACCTTCGCGGGCGAGAAAGAGCTCGAACAGCAACGTGA
ACAGTGGGAATTGCCGTCGTACACCGGTGGCTTCCGGTCCTTCCGCACGT
AATCGCGGTAACGCTGCTGCTGCTCCCGATCATCGAAAAAACTAGCCGTC
CCCCCGGCTCCAACAGTAGCCGCCCCTCCGGCAGCTCCATCCCTGCTATG
GTACCCAGGCGCAAAGCCAGCGCCGCTTATCCTCATGTTACCTGCCGCAT
ACCCGGCATCACCCACTCTCCTTCTCGCGGCTCTCCGCTGAACTCCTCTC
TTCCGCTTCATCTATTCTCCTCTGCATTTCCGCCATCTTGGCTGCCGCTT
TCTCGGCTGCTCTCTCGACATTCCTCGCTTGTTCTTCTAACTCTCTTTCT
CTTTCCGTCATCGCCGAACCAACACCTGGTCTGGCTAGGCTCCAAACTAC
GATATCGTGTTTGTGTGCACTGCCGCCCTCAGCGGTCTGTGGT

protein sequence of EsuBft429_14a-0001

>EsuBft429_14 ID=EsuBft429_14|Name=EsuBft429_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MLLSGTALWPKPSAPPPLPPMLLSVTALWPNPSSPPPLLPMLPPPPLRPS
VYQRQLAVPPLLLNGRKLELYQERRCRNVEVASVDEAAAVAWAAAAPMAV
ARTSAARTVVAAAAERNTLCQTRRTSTDAGTVAVREHLRMTAVDHAAVDE
KNFPNSRAENFHRRHEERAGHRSALPSAAQHSRGLSRRAGYAQDSPSPCA

mRNA from alignment at Scaffold_562:261575..263435+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft429_14a-0001 ID=EsuBft429_14a-0001|Name=EsuBft429_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1861bp|location=Sequence derived from alignment at Scaffold_562:261575..263435+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGTCGGGGACGGCGCTCTGGCCGAAGCCGTCCGCACCACCTCC
GCTCCCGCCGATGCTGCTGTCGGTGACGGCGCTCTGGCCGAACCCGTCCT
CGCCGCCGCCGCTTCTGCCGATGCTGCCGCCGCCGCCGCTGCGGCCGTCT
GTATACCAACGCCAACTCGCTGTTCCTCCGCTGCTGCTGAACGGGCGAAA
GCTGGAGCTGTACCAGGAGCGCCGTTGCAGGAACGTAGAGGTTGCTTCTG
TTGACGAGGCTGCTGCTGTGGCATGGGCTGCTGCTGCACCGATGGCTGTG
GCACGAACCTCTGCTGCACGCACGGTTGTTGCTGCTGCTGCTGAAAGGAA
CACCCTCTGCCAAACACGCCGTACCTCCACTGATGCTGGAACGGTTGCTG
TACGGGAACACCTCCGCATGACTGCTGTAGACCATGCTGCTGTTGACGAG
AAAAACTTCCCCAACAGTCGCGCCGAAAATTTCCACCGCCGACATGAAGA
GCGTGCGGGTCACCGGTCGGCGCTGCCGTCCGCCGCGCAACATTCACGAG
GTCTCTCTCGGCGTGCAGGCTACGCACAAGATTCTCCAAGTCCTTGCGCG
TGAGCGAGCTGTTGGCCATGAGGAGAATGTGGACCTGTTCGTAGTCGGCG
GAGAGGTTCCTTCGAAGCATCGCGAGGACTTCTCTATCTGTGATCGCATC
GCCGTTGACGGCGCGGAGAGTAGACAACACCCTGTCGAACCTAAGAAAAT
ACTCCTTTGGGTCCTCTTCAAGCTGCATCTTCATGTTCGTGAGAGACAGC
TTCAGTGCCTCCTGCTCGGAGTCACTCATCGCCAGGCAGAACTGTTGTGT
GCAGCCTCCCACGCCCCAGACACAGTCCCAACGGCAAGGATTCTAGCCTG
AAAGTTTGCCCCCTTCGTGGCGCGCATCAAGTACTCAAACGCATACTCAT
GATCGCGCACGCGACGCTCACCGTGCCAGCGGACGTTTTCGCTCCTTGGC
AGCCCGTTGAGGAGCCAGATGCGTTGGTCTGGACTCGCCGGCTTGGCGAG
TGTGTGTGATAGACCTTCGCGGGCGAGAAAGAGCTCGAACAGCAACGTGA
ACAGTGGGAAGTTGCCGTCGTACACCGGTGGCTTCCGGTCCTTCCGCNCC
AGGCAGAACTGTTGTGTGCAGCCTCCCACGCCCCAGACACAGTCCCAACG
GCAAGGATTCTAGCCTGAAAGTTTGCCCCCTTCGTGGCGCGCATCAAGTA
CTCAAACGCATACTCATGATCGCGCACGCGACGCTCACCGTGCCAGCGGA
CGTTTTCGCTCCTTGGCAGCCCGTTGAGGAGCCAGATGCGTTGGTCTGGA
CTCGCCGGCTTGGCGAGTGTGTGTGATAGACCTTCGCGGGCGAGAAAGAG
CTCGAACAGCAACGTGAACAGTGGGAAGTTGCCGTCGTACACCGGTGGCT
TCCGGTCCTTCCGCACGTAATCGCGGTAACGCTGCTGCTGCTCCCGATCA
TCGAAAAAACTAGCCGTCCCCCCGGCTCCAACAGTAGCCGCCCCTCCGGC
AGCTCCATCCCTGCTATGGTACCCAGGCGCAAAGCCAGCGCCGCTTATCC
TCATGTTACCTGCCGCATACCCGGCATCACCCACTCTCCTTCTCGCGGCT
CTCCGCTGAACTCCTCTCTTCCGCTTCATCTATTCTCCTCTGCATTTCCG
CCATCTTGGCTGCCGCTTTCTCGGCTGCTCTCTCGACATTCCTCGCTTGT
TCTTCTAACTCTCTTTCTCTTTCCGTCATCGCCGAACCAACACCTGGTCT
GGCTAGGCTCCAAACTACGATATCGTGTTTGTGTGCACTGCCGCCCTCAG
CGGTCTGTGGT

Coding sequence (CDS) from alignment at Scaffold_562:261575..263435+

>EsuBft429_14a-0001 ID=EsuBft429_14a-0001|Name=EsuBft429_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_562:261575..263435+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGTCGGGGACGGCGCTCTGGCCGAAGCCGTCCGCACCACCTCC
GCTCCCGCCGATGCTGCTGTCGGTGACGGCGCTCTGGCCGAACCCGTCCT
CGCCGCCGCCGCTTCTGCCGATGCTGCCGCCGCCGCCGCTGCGGCCGTCT
GTATACCAACGCCAACTCGCTGTTCCTCCGCTGCTGCTGAACGGGCGAAA
GCTGGAGCTGTACCAGGAGCGCCGTTGCAGGAACGTAGAGGTTGCTTCTG
TTGACGAGGCTGCTGCTGTGGCATGGGCTGCTGCTGCACCGATGGCTGTG
GCACGAACCTCTGCTGCACGCACGGTTGTTGCTGCTGCTGCTGAAAGGAA
CACCCTCTGCCAAACACGCCGTACCTCCACTGATGCTGGAACGGTTGCTG
TACGGGAACACCTCCGCATGACTGCTGTAGACCATGCTGCTGTTGACGAG
AAAAACTTCCCCAACAGTCGCGCCGAAAATTTCCACCGCCGACATGAAGA
GCGTGCGGGTCACCGGTCGGCGCTGCCGTCCGCCGCGCAACATTCACGAG
GTCTCTCTCGGCGTGCAGGCTACGCACAAGATTCTCCAAGTCCTTGCGCG
TGA