EsuBft429_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft429_13a-0001
Unique NameEsuBft429_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:258986..261473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft429_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length198
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft429_13aEsuBft429_13aEctocarpus subulatus male Bft15bgeneScaffold_562 258986..261473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft429_13a-0001EsuBft429_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 260084..261473 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft429_13a-0001-exonagat-exon-76716Ectocarpus subulatus male Bft15bexonScaffold_562 258986..260313 -
EsuBft429_13a-0001-exonagat-exon-76715Ectocarpus subulatus male Bft15bexonScaffold_562 260669..260995 -
EsuBft429_13a-0001-exonagat-exon-76717Ectocarpus subulatus male Bft15bexonScaffold_562 261078..261347 -
EsuBft429_13a-0001-exonEsuBft429_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 261413..261473 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft429_13a-0001-exonagat-three_prime_utr-15629Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_562 258986..260083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft429_13a-0001-cdsEsuBft429_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 260084..260313 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft429_13a-0001 ID=EsuBft429_13a-0001|Name=EsuBft429_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1986bp|location=Sequence derived from alignment at Scaffold_562:258986..261473- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAGCAGCAGCCTCGTCAACAGAAGCAACCTCTACGTTCCTGCAA
CGGCGCTCCTGACGGCCGCAGCGGCGGCGGCGGCAGCATCGGCAGAAGCG
GCGGCGGCGAGGACGGGTTCGGCCAGAGCGCCGTCACCGACAGCAGCATC
GGCGGGAGCGGAGGTGGTGCGGACGGCTTCGGCCAGAGCGCCGTCCCCGA
CAGCAGCATCGGCGGTGGCGGGGTCGGTGACGGGGGGAACGGCAGCAGCA
GCAGCAGCAGCGGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGTATCCA
GACGGCCGCAGCGGCGGTGGTAGCGACAACGGGGCGGCGGTATGTGACGA
AGAGTTGGAGGAAGCGGTTGGTGCGACAACCATGCCATTGCCAGTCCTCG
AGGAGCTTGATAGCCAATGTGCTGGGGGGGGCGTGAGCAACAGCAGCAGC
AGCAGCAGCAGCTGCAGCAGCTGCAGCAGCGAGGACAGCGGCGGCGATGG
GAGCGAGGACGTGGGGTTGGATGAAATATGGAGTGGAGCCCCGACGCACC
TTTCCGACCCCGGGAAGGCTGAGGGGGACGTGAGCAGCAGCAGCAGCGGC
AGCAGCAGCAGCGGCAGCAGCAGCGAGGAAAGCGGTGGTGATGGGAGCGG
GGATGAGGGGTTGGATGAAACCTGGTGTGGAGCCCCGACGCACCCCTTCG
ACCCCGGTACGACATGTTCGCATGTCGCGAGGAGTCGGGGGGCGGTACCA
GGGATGGCGTACCCCTTCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGG
CCAGAGCTCCGACGGCAGCAGACGACGGCAGCGGCGGCTTTGGCCAGAGC
CCCGTCGGCGGCAGCGGCGACCACGGCGGCGGTGGTAGAGGCGGCAGCAG
CGACGTCACCGGCAGCCGTGTTGGCGCTAGGTCTCATGACGGTCGTGGCG
GCGGGGGGACGGCAACGGCGGTGATGGCAGCGGCGGCAGCAGCGGTGGCG
CCCTCGAGTCGACCGGGAACGGGGAGGACACGGTGACAGCGACGACCTCA
CCTTGTTACAGCCAAGTGGGAGAACATGTGAAACTTTTACGACTTTGTTC
GGTTTTGTGATCAAGCATGTACGTTTTAGATTCGCCATTTGGCTTCGCAT
TTATTTTTTTGTTATGTTTTTCCCTTGCTAGCGCACCGTGCACTTTGATG
CAGAAAACACATGTATGCCACGGCGTGTGTGTAATTTTTTTTGTTTGTAC
TTGGTTTCATTATGATAATTGTACACTGCGACAAGATAATCATTGCCACA
ACCTGTGGAATAAGAAGCAGCACGTGGGTATTTTTTTTTCCTTGGTTCTT
GGTATATTTTCAGTCGCGTTTAACCTTGCAACTGAATGCTTCATACTATT
TCCGTATTCTTTGGAGGGAGTACGTTCAGTCGAGTTTTTTTTTTCTACGA
ACTGGACACTTCGCACTTAGAATGTTTCGATACTTTGGTTTTATGTGAGG
TCCTGATTAAGTGGTCGCTCTCTGCGGTGTGTTTCTGGCCACGCGCACGA
AATGGGGTGACAGCGCATTTTTTGACATGCATGAAGGCATACCGATCAGG
GAGCAAGGGGACTTACGGAGTTCCAGTTGAGGAGACAGTTTGTATACGGT
AGGAACTTTTTCTGGAGTTTGATGCCTTATGTGTTTCGTGTTTCTTCATG
TTTCTTGTTTGTTTCTCATGTTTCGCTGCTCTTGCATCGAAAATCATGGG
GGGGGATGTCATGTATGGCCATGATTCTAGAGGGCATGAGCAGCAATCGA
ATTGGTTTGTTTTCTGGCCGCGCCTACTTGTGTGTTAGGTGAACGGCAAA
GTAAGGGGGGTGTTGGCATCAAAATATTAGCTCGGGGTGAATTTTGAGAG
CTAGCAGCAGGGGGGCTGTTTGCGTGGATGCTTGCTTACGTTTTCTACCG
TTTCTTGGACAACAGCGACGGTACCGATTAGCGGGT
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protein sequence of EsuBft429_13a-0001

>EsuBft429_13 ID=EsuBft429_13|Name=EsuBft429_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=295bp
MPQQQPRQQKQPLRSCNGAPDGRSGGGGSIGRSGGGEDGFGQSAVTDSSI
GGSGGGADGFGQSAVPDSSIGGGGVGDGGNGSSSSSSGGVPGRRVGVGYP
DGRSGGGSDNGAAVCDEELEEAVGATTMPLPVLEELDSQCAGGGVSNSSS
SSSSCSSCSSEDSGGDGSEDVGLDEIWSGAPTHLSDPGKAEGDVSSSSSG
SSSSGSSSEESGGDGSGDEGLDETWCGAPTHPFDPGTTCSHVARSRGAVP
GMAYPFSRSSDGSGGFGQSSDGSRRRQRRLWPEPRRRQRRPRRRW
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mRNA from alignment at Scaffold_562:258986..261473-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft429_13a-0001 ID=EsuBft429_13a-0001|Name=EsuBft429_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2488bp|location=Sequence derived from alignment at Scaffold_562:258986..261473- (Ectocarpus subulatus male Bft15b)
ATGCCACAGCAGCAGCCTCGTCAACAGAAGCAACCTCTACGTTCCTGCAA
CGGCGCTCCTGGTACAGCTCCAGCTTTCGCCCGTTCAGCAGCAGCGGAGG
AACAGCGAGTTGGCGTTGGTATACAGACGGCCGCAGCGGCGGCGGCGGCA
GCATCGGCAGAAGCGGCGGCGGCGAGGACGGGTTCGGCCAGAGCGCCGTC
ACCGACAGCAGCATCGGCGGGAGCGGAGGTGGTGCGGACGGCTTCGGCCA
GAGCGCCGTCCCCGACAGCAGCATCGGCGGTGGCGGGGTCGGTGACGGGG
GGAACGGCAGCAGCAGCAGCAGCAGCGGCGGCGTCCCCGGTCGCCGCGTT
GGCGTCGGGTATCCAGACGGCCGCAGCGGCGGTGGTAGCGACAACGGTGA
TGGGGGTAACGGCAACGGCGACAGCAGCAGCGGCGTCCCCGGTCGCCGCG
TTGGCGTCGGGTGTCCAGACGGCCGCAGGGGCGGCGGTATGTGACGAAGA
GTTGGAGGAAGCGGTTGGTGCGACAACCATGCCATTGCCAGTCCTCGAGG
AGCTTGATAGCCAATGTGCTGGGGGGGGCGTGAGCAACAGCAGCAGCAGC
AGCAGCAGCTGCAGCAGCTGCAGCAGCGAGGACAGCGGCGGCGATGGGAG
CGAGGACGTGGGGTTGGATGAAATATGGAGTGGAGCCCCGACGCACCTTT
CCGACCCCGGGAAGGCTGAGGGGGACGTGAGCAGCAGCAGCAGCGGCAGC
AGCAGCAGCGGCAGCAGCAGCGAGGAAAGCGGTGGTGATGGGAGCGGGGA
TGAGGGTTGGATGAAACCTGGTGTGGAGCCCCGACGCACCCCTTCGACCC
CGGTACGACATGTTCGCATGTCGCGAGGAGTCGGGGGGCGGTACCAGGGA
NCGAGGAGCTTGATAGCCAATGTGCTGGGGGGGGCGTGAGCAACAGCAGC
AGCAGCAGCAGCAGCTGCAGCAGCTGCAGCAGCGAGGACAGCGGCGGCGA
TGGGAGCGAGGACGTGGGGTTGGATGAAATATGGAGTGGAGCCCCGACGC
ACCTTTCCGACCCCGGGAAGGCTGAGGGGGACGTGAGCAGCAGCAGCAGC
GGCAGCAGCAGCAGCGGCAGCAGCAGCGAGGAAAGCGGTGGTGATGGGAG
CGGGGATGAGGGTTGGATGAAACCTGGTGTGGAGCCCCGACGCACCCCTT
CGACCCCGGTACGACATGTTCGCATGTCGCGAGGAGTCGGGGGGCGGTAC
CAGGGATGGCGTACCCCTTCAGCAGGAGCAGCGACGGGAGTGGTGGCTTC
GGCCAGAGCTCCGACGGCAGCAGACGACGGCAGCGGCGGCTTTGGCCAGA
GCCCCGTCGGCGGCAGCGGCGACCACGGCGGCGGTGGTAGAGGCGGCAGC
AGCGACGTCACCGGCAGCCGTGTTGGCGCTAGGTCTCATGACGGTCGTGG
CGGCGGGGGGACGGCAACGGCGGTGATGGCAGCGGCGGCAGCAGCGGTGG
CGCCCTCGAGTCGACCGGGAACGGGGAGGACACGGTGACAGCGACGACCT
CACCTTGTTACAGCCAAGTGGGAGAACATGTGAAACTTTTACGACTTTGT
TCGGTTTTGTGATCAAGCATGTACGTTTTAGATTCGCCATTTGGCTTCGC
ATTTATTTTTTTGTTATGTTTTTCCCTTGCTAGCGCACCGTGCACTTTGA
TGCAGAAAACACATGTATGCCACGGCGTGTGTGTAATTTTTTTTGTTTGT
ACTTGGTTTCATTATGATAATTGTACACTGCGACAAGATAATCATTGCCA
CAACCTGTGGAATAAGAAGCAGCACGTGGGTATTTTTTTTTCCTTGGTTC
TTGGTATATTTTCAGTCGCGTTTAACCTTGCAACTGAATGCTTCATACTA
TTTCCGTATTCTTTGGAGGGAGTACGTTCAGTCGAGTTTTTTTTTTCTAC
GAACTGGACACTTCGCACTTAGAATGTTTCGATACTTTGGTTTTATGTGA
GGTCCTGATTAAGTGGTCGCTCTCTGCGGTGTGTTTCTGGCCACGCGCAC
GAAATGGGGTGACAGCGCATTTTTTGACATGCATGAAGGCATACCGATCA
GGGAGCAAGGGGACTTACGGAGTTCCAGTTGAGGAGACAGTTTGTATACG
GTAGGAACTTTTTCTGGAGTTTGATGCCTTATGTGTTTCGTGTTTCTTCA
TGTTTCTTGTTTGTTTCTCATGTTTCGCTGCTCTTGCATCGAAAATCATG
GGGGGGGATGTCATGTATGGCCATGATTCTAGAGGGCATGAGCAGCAATC
GAATTGGTTTGTTTTCTGGCCGCGCCTACTTGTGTGTTAGGTGAACGGCA
AAGTAAGGGGGGTGTTGGCATCAAAATATTAGCTCGGGGTGAATTTTGAG
AGCTAGCAGCAGGGGGGCTGTTTGCGTGGATGCTTGCTTACGTTTTCTAC
CGTTTCTTGGACAACAGCGACGGTACCGATTAGCGGGT
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Coding sequence (CDS) from alignment at Scaffold_562:258986..261473-

>EsuBft429_13a-0001 ID=EsuBft429_13a-0001|Name=EsuBft429_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=888bp|location=Sequence derived from alignment at Scaffold_562:258986..261473- (Ectocarpus subulatus male Bft15b)
ATGCCACAGCAGCAGCCTCGTCAACAGAAGCAACCTCTACGTTCCTGCAA
CGGCGCTCCTGACGGCCGCAGCGGCGGCGGCGGCAGCATCGGCAGAAGCG
GCGGCGGCGAGGACGGGTTCGGCCAGAGCGCCGTCACCGACAGCAGCATC
GGCGGGAGCGGAGGTGGTGCGGACGGCTTCGGCCAGAGCGCCGTCCCCGA
CAGCAGCATCGGCGGTGGCGGGGTCGGTGACGGGGGGAACGGCAGCAGCA
GCAGCAGCAGCGGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGTATCCA
GACGGCCGCAGCGGCGGTGGTAGCGACAACGGGGCGGCGGTATGTGACGA
AGAGTTGGAGGAAGCGGTTGGTGCGACAACCATGCCATTGCCAGTCCTCG
AGGAGCTTGATAGCCAATGTGCTGGGGGGGGCGTGAGCAACAGCAGCAGC
AGCAGCAGCAGCTGCAGCAGCTGCAGCAGCGAGGACAGCGGCGGCGATGG
GAGCGAGGACGTGGGGTTGGATGAAATATGGAGTGGAGCCCCGACGCACC
TTTCCGACCCCGGGAAGGCTGAGGGGGACGTGAGCAGCAGCAGCAGCGGC
AGCAGCAGCAGCGGCAGCAGCAGCGAGGAAAGCGGTGGTGATGGGAGCGG
GGATGAGGGGTTGGATGAAACCTGGTGTGGAGCCCCGACGCACCCCTTCG
ACCCCGGTACGACATGTTCGCATGTCGCGAGGAGTCGGGGGGCGGTACCA
GGGATGGCGTACCCCTTCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGG
CCAGAGCTCCGACGGCAGCAGACGACGGCAGCGGCGGCTTTGGCCAGAGC
CCCGTCGGCGGCAGCGGCGACCACGGCGGCGGTGGTAG
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