EsuBft429_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft429_12a-0001
Unique NameEsuBft429_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:246182..247306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft429_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length81
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft429_12aEsuBft429_12aEctocarpus subulatus male Bft15bgeneScaffold_562 246182..247306 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft429_12a-0001-exonagat-exon-76714Ectocarpus subulatus male Bft15bexonScaffold_562 246182..246210 -
EsuBft429_12a-0001-exonEsuBft429_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 246517..247306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft429_12a-0001-cdsEsuBft429_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 246182..246210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft429_12a-0001EsuBft429_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 246182..247306 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft429_12a-0001 ID=EsuBft429_12a-0001|Name=EsuBft429_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=819bp|location=Sequence derived from alignment at Scaffold_562:246182..247306- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGCGCGGGGGCGGGTGGTACCCCCGCCCCGGCCCCTTCCGGCGG
AGCCGCCTTTTCCTTTGGCTCCGCACAACCCGCCGCAGCAGCGGCGTCTA
AGCCTGCCGCCGGCGGCTTCAGCTTCGGATCGACACCGGCCGCGGCACCG
GCTTCCTCCGCAACGGCGGCGGCGGCCCCCGCCGGGGGCTTCGGGGGCTT
TGGCGCGGCCCCCGCGGCTGCCACCCCGGCCCACGCCCCCGGATCAGCGT
TTTCCTTGGGCGGCTTCGGAGCTGCTGCTAGCGGCACCGCTCCCGCACCT
GCGGCTTCGGGAACTTTCGGCGGCGGTGGTTTTGGAACGGCGAAACCCAC
CGCTCCCGCGGCGGCGGCGTTCAGTGGCGGGTTCGGCGGGGCGAAAACTG
CTGCTTCTACCGCCGCCCCCGCTGCCGCGGGGGGCTTCAGCTTCGGGAAG
AGCCCCGCTCCCGCTTCCGCTGCGCCTGCCGCCGCGGGCTTAGGTGGGGG
CTTTGGTTCGGCCGCCACGGCGCCGGCGGCCACGACGTCCGTGTTCGGGG
GAGGAGGAGGGTTCGGGGCTGCACCAGCTGCCGCGGCGCTGGCGCCTGCG
GCCGCCTCCGGTAGCTTTGGAGGTACGGGGGCTGGCGCGGCGACGGCGGC
GGCGGCGGGCAAAGCGCTTTCTTTCGGTGCCGCTGGAGGTACCGCTGCCT
CGGCTCCTGCTCCCGCCGGTGGGTTATGGGTTTCTCAATGTTGGGGAGGG
GAGGGGGAGAGGCCGGGAGGATTGTACCGCTGTGATGGAGACGCAACTGA
CTTCTGCCCAACACCTTAG
back to top

protein sequence of EsuBft429_12a-0001

>EsuBft429_12 ID=EsuBft429_12|Name=EsuBft429_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MFGAGAGGTPAPAPSGGAAFSFGSAQPAAAAASKPAAGGFSFGSTPAAAP
ASSATAAAAPAGGFGGFGAAPAAATPAHAPGSAFSLGGFGAAASGTAPAP
AASGTFGGGGFGTAKPTAPAAAAFSGGFGGAKTAASTAAPAAAGGFSFGK
SPAPASAAPAAAGLGGGFGSAATAPAATTSVFGGGGGFGAAPAAAALAPA
AASGSFGGTGAGAATAAAAGKALSFGAAGGTAASAPAPAGGLWVSQCWGG
EGERPGGLYRCDGDATDFCPTP
back to top

mRNA from alignment at Scaffold_562:246182..247306-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft429_12a-0001 ID=EsuBft429_12a-0001|Name=EsuBft429_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1125bp|location=Sequence derived from alignment at Scaffold_562:246182..247306- (Ectocarpus subulatus male Bft15b)
ATGTTCGGCGCGGGGGCGGGTGGTACCCCCGCCCCGGCCCCTTCCGGCGG
AGCCGCCTTTTCCTTTGGCTCCGCACAACCCGCCGCAGCAGCGGCGTCTA
AGCCTGCCGCCGGCGGCTTCAGCTTCGGATCGACACCGGCCGCGGCACCG
GCTTCCTCCGCAACGGCGGCGGCGGCCCCCGCCGGGGGCTTCGGGGGCTT
TGGCGCGGCCCCCGCGGCTGCCACCCCGGCCCACGCCCCCGGATCAGCGT
TTTCCTTGGGCGGCTTCGGAGCTGCTGCTAGCGGCACCGCTCCCGCACCT
GCGGCTTCGGGAACTTTCGGCGGCGGTGGTTTTGGAACGGCGAAACCCAC
CGCTCCCGCGGCGGCGGCGTTCAGTGGCGGGTTCGGCGGGGCGAAAACTG
CTGCTTCTACCGCCGCCCCCGCTGCCGCGGGGGGCTTCAGCTTCGGGAAG
AGCCCCGCTCCCGCTTCCGCTGCGCCTGCCGCCGCGGGCTTAGGTGGGGG
CTTTGGTTCGGCCGCCACGGCGCCGGCGGCCACGACGTCCGTGTTCGGGG
GAGGAGGAGGGTTCGGGGCTGCACCAGCTGCCGCGGCGCTGGCGCCTGCG
GCCGCCTCCGGTAGCTTTGGAGGTACGGGGGCTGGCGCGGCGACGGCGGC
GGCGGCGGGCAAAGCGCTTTCTTTCGGTGCCGCTGGAGGTACCGCTGCCT
CGGCTCCTGCTCCCGCCGGTGGGTTATGGGTTTCTCAATGTTGGGGAGGG
GAGGGGGAGAGGCCGGGAGGATTGTACCGCTGTGATGGAGGTTTGTTGAT
GTGCCGTGCGCGATGCACGTCCACCTTGTCATTTCATGTCATGCCTTCGA
GTGGAGGGTGTTGCTTTTTGCCAGGATGCATGAGAAAGTGTACCAGTCAG
CCCGACGGTTTTTTGGAGGCCGCGTACGTAGGCGCCTGTGCTTCCAGGAC
GGAAGATTTGCGGCCGAATTCGTTGGGGTTTTTCTTCCCCCACGGACATG
TTGTTTTACTGCTGTAGGTCAGCCCCTCATTCCACTGCGAAAAAATCAGC
GAGCCTCCTGGAGCAATGCTTCATTTTATTCTCTAAGGCGCTGTAGACGC
AACTGACTTCTGCCCAACACCTTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_562:246182..247306-

>EsuBft429_12a-0001 ID=EsuBft429_12a-0001|Name=EsuBft429_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_562:246182..247306- (Ectocarpus subulatus male Bft15b)
ATGTTCGGCGCGGGGGCGGGTGGTACCCCCGCCCCGGCCCCTTCCGGCGG
AGCCGCCTTTTCCTTTGGCTCCGCACAACCCGCCGCAGCAGCGGCGTCTA
AGCCTGCCGCCGGCGGCTTCAGCTTCGGATCGACACCGGCCGCGGCACCG
GCTTCCTCCGCAACGGCGGCGGCGGCCCCCGCCGGGGGCTTCGGGGGCTT
TGGCGCGGCCCCCGCGGCTGCCACCCCGGCCCACGCCCCCGGATCAGCGT
TTTCCTTGGGCGGCTTCGGAGCTGCTGCTAGCGGCACCGCTCCCGCACCT
GCGGCTTCGGGAACTTTCGGCGGCGGTGGTTTTGGAACGGCGAAACCCAC
CGCTCCCGCGGCGGCGGCGTTCAGTGGCGGGTTCGGCGGGGCGAAAACTG
CTGCTTCTACCGCCGCCCCCGCTGCCGCGGGGGGCTTCAGCTTCGGGAAG
AGCCCCGCTCCCGCTTCCGCTGCGCCTGCCGCCGCGGGCTTAGGTGGGGG
CTTTGGTTCGGCCGCCACGGCGCCGGCGGCCACGACGTCCGTGTTCGGGG
GAGGAGGAGGGTTCGGGGCTGCACCAGCTGCCGCGGCGCTGGCGCCTGCG
GCCGCCTCCGGTAGCTTTGGAGGTACGGGGGCTGGCGCGGCGACGGCGGC
GGCGGCGGGCAAAGCGCTTTCTTTCGGTGCCGCTGGAGGTACCGCTGCCT
CGGCTCCTGCTCCCGCCGGTGGGTTATGGGTTTCTCAATGTTGGGGAGGG
GAGGGGGAGAGGCCGGGAGGATTGTACCGCTGTGATGGAGACGCAACTGA
CTTCTGCCCAACACCTTAG
back to top